Non-Coding RNA Search

Ss1.1-Pig4-TMW8031J15.3

Sequence:


               
               CGGGATAGAGAGGCACAGCTGGTGAAAGATCGGAACTCGATGCTACGATTGACCAGCATT
GGCTCTGATGAGGACGATGAGACAGAAACCTATCAGGAGAAGGTGCACATGACTTGGACG
AAAGACAAGTACATGGCATCCCGGGGGCAGAAGGCCAAGTCAATGGAAGGATTCCAGGAC
CTGCTTAACATGCGTCCAGACCAGTCCAACGTGAGGCGGATGCATACAGCTGTGAAGCTC
AATGAGGTTATAGTTAACAAGTCTCACGAAGCAAAGCTGGTGTTGTTGAATATGCCCGGG
CCACCCCGAAACCCTGAGGGTGATGAAAACTACATGGAGTTCCTAGAAGTGCTTACCGAG
GGACTAGAGCGAGTCCTTCTTGTCCGAGGTGGTGGCAGTGAAGTGATCACCATTTATTCA
TAACCTACTCCTGAATGACTCTGCTTGGCCTCACCTTTCCAGAAAGGCTTCCATCCTCCA
CGGAAGTGCCAGCTCTTTCCTGCCAGTCGCATCAACTAGAGACCTATGTTCTGTATACAT
CATGCTGAACTCTTAATGAGCTGAGCCTGAAGTACTTGTGCAGAAAAGTACTAGATCTGC
TCTTTGCTACCATGACCTGCTGTCCTTAAAGCAGATATTCCCTCAACATCAGAGCAATTC
TCAGTTCCTAAAAGCCATTCCTGTACCAGTTGAAGGCAAGTTAGAGTTAGCCTACTAACC
CAGTAAAGTGAATTGGCAAATGGGATGCTAGAAATTTAACTGAAGACAAAGGCAAGTACA
CATCTAACATTAAAGATGAATCTCAGAAGTCAAGATTCAGTGATAATACCATGGGGTTAA
GACAGAGACACAGCCTTGTATTTTAAAGAATTCTTGGCCAAATACATGGAGATCTAACAT
CTTGAGATAATGATGGCGAGCCAAGATGAAAAATTTCATTAGTGCATCCATGGCTCTTCA
GGACTCTAATTTTGTATTAGGGTACTAATATAGAAAAACTGAAACGTGAAACTGCAGCCT
CTACTTCCTCCAAAACAAGATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGATAGAGAGGCACAGCTGGTGAAAGATCGGAACTCGATGCTACGATTGACCAGCATT
GGCTCTGATGAGGACGATGAGACAGAAACCTATCAGGAGAAGGTGCACATGACTTGGACG
AAAGACAAGTACATGGCATCCCGGGGGCAGAAGGCCAAGTCAATGGAAGGATTCCAGGAC
CTGCTTAACATGCGTCCAGACCAGTCCAACGTGAGGCGGATGCATACAGCTGTGAAGCTC
AATGAGGTTATAGTTAACAAGTCTCACGAAGCAAAGCTGGTGTTGTTGAATATGCCCGGG
CCACCCCGAAACCCTGAGGGTGATGAAAACTACATGGAGTTCCTAGAAGTGCTTACCGAG
GGACTAGAGCGAGTCCTTCTTGTCCGAGGTGGTGGCAGTGAAGTGATCACCATTTATTCA
TAACCTACTCCTGAATGACTCTGCTTGGCCTCACCTTTCCAGAAAGGCTTCCATCCTCCA
CGGAAGTGCCAGCTCTTTCCTGCCAGTCGCATCAACTAGAGACCTATGTTCTGTATACAT
CATGCTGAACTCTTAATGAGCTGAGCCTGAAGTACTTGTGCAGAAAAGTACTAGATCTGC
TCTTTGCTACCATGACCTGCTGTCCTTAAAGCAGATATTCCCTCAACATCAGAGCAATTC
TCAGTTCCTAAAAGCCATTCCTGTACCAGTTGAAGGCAAGTTAGAGTTAGCCTACTAACC
CAGTAAAGTGAATTGGCAAATGGGATGCTAGAAATTTAACTGAAGACAAAGGCAAGTACA
CATCTAACATTAAAGATGAATCTCAGAAGTCAAGATTCAGTGATAATACCATGGGGTTAA
GACAGAGACACAGCCTTGTATTTTAAAGAATTCTTGGCCAAATACATGGAGATCTAACAT
CTTGAGATAATGATGGCGAGCCAAGATGAAAAATTTCATTAGTGCATCCATGGCTCTTCA
GGACTCTAATTTTGTATTAGGGTACTAATATAGAAAAACTGAAACGTGAAACTGCAGCCT
CTACTTCCTCCAAAACAAGATTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57108073|ref|XP_535415.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57108073|ref|XP_535415.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-210, + strand, RNAz p=0.708146

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-210, + strand, RNAz p=0.708146

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC051709, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC051709, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-210, gnl|bosTau2|chr10 (17356382-17356581)
               

               
               11-210, gnl|Hg17|chr15 (32315694-32315494)
               

               
               11-210, gnl|Mm7|chr2 (112208004-112208206)
               


               
               332-1042, gnl|bosTau2|chr10 (17358039-17358768)
               

               
               332-1042, gnl|Hg17|chr15 (32313465-32312782)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-210, gnl|bosTau2|chr10 (17356382-17356581)
               

               
               11-210, gnl|Hg17|chr15 (32315694-32315494)
               

               
               11-210, gnl|Mm7|chr2 (112208004-112208206)
               


               
               332-1042, gnl|bosTau2|chr10 (17358039-17358768)
               

               
               332-1042, gnl|Hg17|chr15 (32313465-32312782)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	11-210, gnl\|bosTau2\|chr10 (17356382-17356581)
	11-210, gnl\|Hg17\|chr15 (32315694-32315494)
	11-210, gnl\|Mm7\|chr2 (112208004-112208206)

	332-1042, gnl\|bosTau2\|chr10 (17358039-17358768)
	332-1042, gnl\|Hg17\|chr15 (32313465-32312782)