Non-Coding RNA Search

Ss1.1-Pig4-TMW8031J17.5

Sequence:


               
               GTGGCTTCGGGAAGAACTGCCATGGAGACCACCCCCCCTTCTTCCCAAGAGGTGGTGGTG
GCTGTGGAGGGATCTGCTGCTAGAACCATGCTGGAGAGGGAGTCCCGGCAGAGGAGCAAA
TTCCTCTGCCCTGAGATGCCCTTGAGAACTCCGGAGAATGAAGGACAATTTGCTTCAAGA
GTGTCTGGTTTCTTCCACTGCTTGGAAAAACATTCTATTACATGTAGCATTCCTGTTCCT
CTCAAACAAAGTAGGTAACTTGGAGGTCACTGGTAGGCTGTCCTTAAGGACTCTACTGTG
AAGGAGAACTCACCTAGGAAAGCTGGAGCCTGCTCTGAGCTGTTGGCCAAGGCTGACAGA
TGAGAGGGCTGGAGCTCCTGCAGCTGGAGCTGCTCTGAGGGCTTACGCCCATTCTTCTGC
AGCAGGAGAGCCCAGAGTTTCCTCTAGCTGCTGAAAACACTCACCAAACTGACAGGCCCT
GGGAGGAGACCGTGCTCTGCAAAAGCAGGAGCGGCTCCTTCTTGGCTTTGACTGGCTGCT
TCCCCTGGGAGAGCAGTCAATACTTCAGGGAAGCGGCCAATGAAATACTAATGCCTTGCA
ATGAACTTTGACTGGAGGTCAGCTTCCTGAAAACATGGCAGTCCTTTGCCTGGTAGTTTC
ATCTCATCTCATTGCTTGGACTTTGACAGATGTCCTGTTCACCCCTTTTATTTCCTGCAT
GTCAGCCTCCCCGGAGGAGCAAGAACATCTCCCCTTTGCCATGTGAACAGCTGTTGACCC
TGAGTGGAAGGTATGTGTGGTTCCAGCTCTACTGACAGTGGGAGCTCAGAAGGTCACAGA
AGAGTTAGGGACCATGGCATTCAGCCACCTGCTGGATGGCAGGCCAGAGGCAATTTGATG
TAAATTATGCACAGTCTTCCCTTCCTGCAGCCCTTCTCCTGACTGAATTTTTTTCTTTTT
TTTTTTTTTACAACTACTCGCCAATGATCCACGAAGGCCAAACAATCTCTTGCCTTAGGT
GGAGAGCTCAACCTCCCGGTCACCATACCATCCTCCACTCTGTGGTTTCTTGGCATCTAT
TTTGTGAGCTACTAACTTGACCTATTCCTCTCTCCCAGCATTTTTGGATTATAGAATTGT
TATTTCCTGCTTTGTTACTTTGGGAATTTTGGATTTCTTTGGTTTTGTTTTTAAGCAGTA
GCCTAAATTTCCTACAACACTAAATAAATTGATACTACCTTTCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCTTCGGGAAGAACTGCCATGGAGACCACCCCCCCTTCTTCCCAAGAGGTGGTGGTG
GCTGTGGAGGGATCTGCTGCTAGAACCATGCTGGAGAGGGAGTCCCGGCAGAGGAGCAAA
TTCCTCTGCCCTGAGATGCCCTTGAGAACTCCGGAGAATGAAGGACAATTTGCTTCAAGA
GTGTCTGGTTTCTTCCACTGCTTGGAAAAACATTCTATTACATGTAGCATTCCTGTTCCT
CTCAAACAAAGTAGGTAACTTGGAGGTCACTGGTAGGCTGTCCTTAAGGACTCTACTGTG
AAGGAGAACTCACCTAGGAAAGCTGGAGCCTGCTCTGAGCTGTTGGCCAAGGCTGACAGA
TGAGAGGGCTGGAGCTCCTGCAGCTGGAGCTGCTCTGAGGGCTTACGCCCATTCTTCTGC
AGCAGGAGAGCCCAGAGTTTCCTCTAGCTGCTGAAAACACTCACCAAACTGACAGGCCCT
GGGAGGAGACCGTGCTCTGCAAAAGCAGGAGCGGCTCCTTCTTGGCTTTGACTGGCTGCT
TCCCCTGGGAGAGCAGTCAATACTTCAGGGAAGCGGCCAATGAAATACTAATGCCTTGCA
ATGAACTTTGACTGGAGGTCAGCTTCCTGAAAACATGGCAGTCCTTTGCCTGGTAGTTTC
ATCTCATCTCATTGCTTGGACTTTGACAGATGTCCTGTTCACCCCTTTTATTTCCTGCAT
GTCAGCCTCCCCGGAGGAGCAAGAACATCTCCCCTTTGCCATGTGAACAGCTGTTGACCC
TGAGTGGAAGGTATGTGTGGTTCCAGCTCTACTGACAGTGGGAGCTCAGAAGGTCACAGA
AGAGTTAGGGACCATGGCATTCAGCCACCTGCTGGATGGCAGGCCAGAGGCAATTTGATG
TAAATTATGCACAGTCTTCCCTTCCTGCAGCCCTTCTCCTGACTGAATTTTTTTCTTTTT
TTTTTTTTTACAACTACTCGCCAATGATCCACGAAGGCCAAACAATCTCTTGCCTTAGGT
GGAGAGCTCAACCTCCCGGTCACCATACCATCCTCCACTCTGTGGTTTCTTGGCATCTAT
TTTGTGAGCTACTAACTTGACCTATTCCTCTCTCCCAGCATTTTTGGATTATAGAATTGT
TATTTCCTGCTTTGTTACTTTGGGAATTTTGGATTTCTTTGGTTTTGTTTTTAAGCAGTA
GCCTAAATTTCCTACAACACTAAATAAATTGATACTACCTTTCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               303-416, + strand, RNAz p=0.557155

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-416, + strand, RNAz p=0.557155

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001002814, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001002814, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               11-797, gnl|bosTau2|chr27 (20989217-20988430)
               

               
               11-797, gnl|Hg17|chr8 (37836899-37836109)
               

               
               11-797, gnl|Mm7|chr8 (25896269-25895516)
               


               
               976-1259, gnl|bosTau2|chr3 (79317927-79317629)
               

               
               976-1259, gnl|Hg17|chr8 (37835911-37835622)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-797, gnl|bosTau2|chr27 (20989217-20988430)
               

               
               11-797, gnl|Hg17|chr8 (37836899-37836109)
               

               
               11-797, gnl|Mm7|chr8 (25896269-25895516)
               


               
               976-1259, gnl|bosTau2|chr3 (79317927-79317629)
               

               
               976-1259, gnl|Hg17|chr8 (37835911-37835622)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               pro (0.512033)
               

               
               cje (0.495704)
               

               
               pla (0.267344)
               

               
               jej (0.197844)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               cje (0.495704)
               

               
               pla (0.267344)
               

               
               jej (0.197844)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	11-797, gnl\|bosTau2\|chr27 (20989217-20988430)
	11-797, gnl\|Hg17\|chr8 (37836899-37836109)
	11-797, gnl\|Mm7\|chr8 (25896269-25895516)

	976-1259, gnl\|bosTau2\|chr3 (79317927-79317629)
	976-1259, gnl\|Hg17\|chr8 (37835911-37835622)

	pro (0.512033)
	cje (0.495704)
	pla (0.267344)
	jej (0.197844)
	sin (0.174948)
	cut (0.169924)
	spl (0.143184)
	ute (0.132784)
	sug (0.127291)
	bla (0.124347)