Non-Coding RNA Search

Ss1.1-Pig4-TMW8031J18.5

Sequence:


               
               ATGGACAGGACGGGAAAGATAGCGATGAGGCTGAGGACGCAGAACTTTATGATGGCCTTT
ACTGTCCAGCGTGCGATAAGTCTTTCAAGGCGGAAAAGGCCATGAGGAATCATGAAAAAT
CAAAGAAGCATCGAGAAATGGTTGCCTTGTTAAAACAACAGTTGGAGGAGGAGGAAGCAA
ATTTTTCAGGACCTCAAACCGATGAAAATAGTCTGAATGCCAATTCTGAGGAAGAAATGG
AGGATGCACCAAAGCAAAAGCTTTCTAAAAAACAAAAGAAGAAGAAACAGAAACCAGCAC
AGAATTATGATGACAATTTCAATGAAAATGGAACTGGAGAAGGAGTAAAGGTTGACCTGG
AAGATAACAACCTAAATCAAGACTGTGCCAAAGACTTGGAAGACGGTCCCCAAGAAAATG
TTGGTGTCACAGAGACTGTTGAACTGTGCGATGACCCCAAAAGCGAAGCTAAAAGTGTTC
CTAAACCCAAAGGAAAGAAAGCCAAAGATACAAAAAAATCTGTCAGAGTACCTGCTGAAC
CACAGGCAATGAATGATGTGCTTATCAGCTGTACAACCTGCCATAGTGAATTTCCATCCC
GGAATAAACTTTTTGACCATCTAAAGGCCACAGGTCATGCAAGAGCACCTTCATCATCAT
CTTTAAACAGTGTAACAAATAATCGAAGCAAGAAAGAGAAACGTAAAAACAGATAGAAAT
TCTGCCAATGCTCTTTCTTTTTGATTGTCTCTAGATTTTGAAACCAAAAACTGAACTGAA
ATCACCTAAAGAGTTAAAATTTTCGTGATCTGCAATTTATTGCATTGTGGAAGATTATTT
TTTATCTTGTAAACATTTTTTGTTTAATATATATTTTTTAAACATTTCATTAGTGATTGA
ATTCTACTTTTGCCATCTGAGTTGACTTGAATGTCTGAGAACAGGTAAATATTGTAAAGT
ATGCATTCTTGACTTCTGTTGGCTCATGTGGACTGAAATGTACAGGGAGAATTAAATTAT
TTTAACACATACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGACAGGACGGGAAAGATAGCGATGAGGCTGAGGACGCAGAACTTTATGATGGCCTTT
ACTGTCCAGCGTGCGATAAGTCTTTCAAGGCGGAAAAGGCCATGAGGAATCATGAAAAAT
CAAAGAAGCATCGAGAAATGGTTGCCTTGTTAAAACAACAGTTGGAGGAGGAGGAAGCAA
ATTTTTCAGGACCTCAAACCGATGAAAATAGTCTGAATGCCAATTCTGAGGAAGAAATGG
AGGATGCACCAAAGCAAAAGCTTTCTAAAAAACAAAAGAAGAAGAAACAGAAACCAGCAC
AGAATTATGATGACAATTTCAATGAAAATGGAACTGGAGAAGGAGTAAAGGTTGACCTGG
AAGATAACAACCTAAATCAAGACTGTGCCAAAGACTTGGAAGACGGTCCCCAAGAAAATG
TTGGTGTCACAGAGACTGTTGAACTGTGCGATGACCCCAAAAGCGAAGCTAAAAGTGTTC
CTAAACCCAAAGGAAAGAAAGCCAAAGATACAAAAAAATCTGTCAGAGTACCTGCTGAAC
CACAGGCAATGAATGATGTGCTTATCAGCTGTACAACCTGCCATAGTGAATTTCCATCCC
GGAATAAACTTTTTGACCATCTAAAGGCCACAGGTCATGCAAGAGCACCTTCATCATCAT
CTTTAAACAGTGTAACAAATAATCGAAGCAAGAAAGAGAAACGTAAAAACAGATAGAAAT
TCTGCCAATGCTCTTTCTTTTTGATTGTCTCTAGATTTTGAAACCAAAAACTGAACTGAA
ATCACCTAAAGAGTTAAAATTTTCGTGATCTGCAATTTATTGCATTGTGGAAGATTATTT
TTTATCTTGTAAACATTTTTTGTTTAATATATATTTTTTAAACATTTCATTAGTGATTGA
ATTCTACTTTTGCCATCTGAGTTGACTTGAATGTCTGAGAACAGGTAAATATTGTAAAGT
ATGCATTCTTGACTTCTGTTGGCTCATGTGGACTGAAATGTACAGGGAGAATTAAATTAT
TTTAACACATACAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5RJL8_RAT

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5RJL8_RAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               141-260, + strand, RNAz p=0.548971

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-260, + strand, RNAz p=0.548971

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               102-271, gnl|bosTau2|chr19 (28040123-28039953)
               

               
               102-271, gnl|Hg17|chr5 (34980730-34980905)
               

               
               102-271, gnl|Mm7|chr15 (10514013-10513838)
               


               
               301-475, gnl|bosTau2|chr19 (28033942-28033768)
               

               
               301-475, gnl|Hg17|chr5 (34986030-34986204)
               

               
               301-475, gnl|Mm7|chr15 (10511400-10511226)
               


               
               551-1035, gnl|bosTau2|chr19 (28030392-28029899)
               

               
               551-1035, gnl|Hg17|chr5 (34990414-34990897)
               

               
               551-1035, gnl|Mm7|chr15 (10508877-10508411)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-271, gnl|bosTau2|chr19 (28040123-28039953)
               

               
               102-271, gnl|Hg17|chr5 (34980730-34980905)
               

               
               102-271, gnl|Mm7|chr15 (10514013-10513838)
               


               
               301-475, gnl|bosTau2|chr19 (28033942-28033768)
               

               
               301-475, gnl|Hg17|chr5 (34986030-34986204)
               

               
               301-475, gnl|Mm7|chr15 (10511400-10511226)
               


               
               551-1035, gnl|bosTau2|chr19 (28030392-28029899)
               

               
               551-1035, gnl|Hg17|chr5 (34990414-34990897)
               

               
               551-1035, gnl|Mm7|chr15 (10508877-10508411)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               cbe (0.478469)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               ste (0.270416)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	102-271, gnl\|bosTau2\|chr19 (28040123-28039953)
	102-271, gnl\|Hg17\|chr5 (34980730-34980905)
	102-271, gnl\|Mm7\|chr15 (10514013-10513838)

	301-475, gnl\|bosTau2\|chr19 (28033942-28033768)
	301-475, gnl\|Hg17\|chr5 (34986030-34986204)
	301-475, gnl\|Mm7\|chr15 (10511400-10511226)

	551-1035, gnl\|bosTau2\|chr19 (28030392-28029899)
	551-1035, gnl\|Hg17\|chr5 (34990414-34990897)
	551-1035, gnl\|Mm7\|chr15 (10508877-10508411)

	cbe (0.478469)
	ste (0.270416)
	tra (0.246184)
	tes (0.207814)
	fty (0.17584)
	ill (0.175593)
	rec (0.17307)
	cki (0.165235)
	fco (0.157208)
	tbr (0.154178)
	lun (0.150489)
	bfe (0.149858)
	hlv (0.139256)
	ssp (0.13552)
	ret (0.128733)
	thg (0.126791)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)