Ss1.1-Pig4-TMW8031J20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGAACTTCAAACATAAAGCTAGACAAGATAATGAAAGAATTGGATGAAGAGGGGAAT CAAAGAAGAAATCTAGAATCTACATTGTCTCAGATCGAAAAGGAGAAAATGTTGCTACAG CACAGAATTAATGAGTACCAAAGAAAAGCAGAACAGGAAAATGAGAAGAGGAGGAATGTA GAAAATGAAGTTTCTACATTAAAGGATCAGTTGGAAGACTTAAAGAAAGTCAGTCAGAAT TCACAGCTTGCGAATGAGAAGCTGGCACAGTTACAAAAGCAGCTAGAAGAAGCCAATGAC TTACTTAGGACAGAATCAGACACAGCTGTAAGGTTAAGGAAGAGTCACACTGAGATGAGC AAGTCAATTACTCAGCTGGAGTCCCTTAACAGAGAACTGCAGGAGAGAAATAGAATTTTA GAGAATTCAAAATCACAAACAGACAAGGATTATTACCAGCTGCAAGCTGTATTAGAAGCT GAACGAAGAGACAGAGGTCGTGATTCTGAGATGATTGGAGACCTACAAGCTCGAATTACA TCTTTACAAGAGGAGGTGAAGCATCTCAAACATAATCTTGAAAGAGTGGAAGGAGAAAGA AAAGATGCTCAAGACATGCTTAATCATTCAGAAAAGGAAAAGAATAATTTAGAAATAGAT TTAAACTATAAGCTTAAATCATTACAGCAACGGTTAGAACAAGAGGTAAATGAACATAAA GTAACCAAAGCTCGTTTAACTGACAAACATCAATCTATTGAAGAAGCAAAGTCTGTTGCA ATGTGTGAGATGGAGAAAAAGCTTAAGGAAGAGAGAGAAGCTCGAGAGAAAGCTGAAAAT AGGGTTGTTCAAATTGAGAAGCAGTGCTCCATGTTAGACGTTGATCTAAAACAATCTCAG CAGAAACTAGAGCATTTGACCGAAAATAAAGAAAGAATGGAGGATGAAGTTAAGAATCTA ACCCTCCAACTGGAGCAGGAATCAAATAAGCGACTATTGTTACAAAATGAATTGAAGACT CAAGCATTTGAGTCAGACAATTTAAAAGGTTTACAAAAGCAGATGAAACAGGAAATAAAT ACATTATTGGAAGCAAAAAGATTGTTAGAATTTGAGTTAGCTCAGCTTACAAAACAATAC AGAGGAAATGAAGGGCAGATGCGGGAGCTACAAGATCAGCTTGAAGCAGAGCAATATTTC TCGACACTTTATAAAACCCAGGTAAAGGAACTTAAGGAAGAAATTGAAGAAAAAAACAGA GAAAATTTAAAGAAAATACAGGAACTGCAAAATGAAAAAGAAACTCTTGCAACTCAGTTG GATCTAGCAGAAACAAAAGCTGAGTCTGAGCAGTTAGCTCGAGGACTTCTGGAAGAACAG TATTTTGAATTGACTCAAGAAAGCAAGAAAGCTGCTTCAAGAAATAGGCAAGAGATTACG GATAAAGATCACATAGTTAGTCGGCTCGAAGAAACGAACAGCATGCTAACCAAAGATATT GATTTACTAAGAAAAGAAAATGAAGAGCTAACTGATAAAATGAGGAAGGCAGAGGAAGAA TATAAATTGAAGAAGGAGGAGGAGATCAGTAATCTTAAGGCCGCCTTTGAAAAGAATATC AATACTGAACGAACTCTTAAAACACAGGCTGTTAACAAGTTGGCAGAAATAATGAATCGG AAAGATTTTAAAATTGATAGAAAGAAAGCTAATACACAGGATTTGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGAACTTCAAACATAAAGCTAGACAAGATAATGAAAGAATTGGATGAAGAGGGGAAT CAAAGAAGAAATCTAGAATCTACATTGTCTCAGATCGAAAAGGAGAAAATGTTGCTACAG CACAGAATTAATGAGTACCAAAGAAAAGCAGAACAGGAAAATGAGAAGAGGAGGAATGTA GAAAATGAAGTTTCTACATTAAAGGATCAGTTGGAAGACTTAAAGAAAGTCAGTCAGAAT TCACAGCTTGCGAATGAGAAGCTGGCACAGTTACAAAAGCAGCTAGAAGAAGCCAATGAC TTACTTAGGACAGAATCAGACACAGCTGTAAGGTTAAGGAAGAGTCACACTGAGATGAGC AAGTCAATTACTCAGCTGGAGTCCCTTAACAGAGAACTGCAGGAGAGAAATAGAATTTTA GAGAATTCAAAATCACAAACAGACAAGGATTATTACCAGCTGCAAGCTGTATTAGAAGCT GAACGAAGAGACAGAGGTCGTGATTCTGAGATGATTGGAGACCTACAAGCTCGAATTACA TCTTTACAAGAGGAGGTGAAGCATCTCAAACATAATCTTGAAAGAGTGGAAGGAGAAAGA AAAGATGCTCAAGACATGCTTAATCATTCAGAAAAGGAAAAGAATAATTTAGAAATAGAT TTAAACTATAAGCTTAAATCATTACAGCAACGGTTAGAACAAGAGGTAAATGAACATAAA GTAACCAAAGCTCGTTTAACTGACAAACATCAATCTATTGAAGAAGCAAAGTCTGTTGCA ATGTGTGAGATGGAGAAAAAGCTTAAGGAAGAGAGAGAAGCTCGAGAGAAAGCTGAAAAT AGGGTTGTTCAAATTGAGAAGCAGTGCTCCATGTTAGACGTTGATCTAAAACAATCTCAG CAGAAACTAGAGCATTTGACCGAAAATAAAGAAAGAATGGAGGATGAAGTTAAGAATCTA ACCCTCCAACTGGAGCAGGAATCAAATAAGCGACTATTGTTACAAAATGAATTGAAGACT CAAGCATTTGAGTCAGACAATTTAAAAGGTTTACAAAAGCAGATGAAACAGGAAATAAAT ACATTATTGGAAGCAAAAAGATTGTTAGAATTTGAGTTAGCTCAGCTTACAAAACAATAC AGAGGAAATGAAGGGCAGATGCGGGAGCTACAAGATCAGCTTGAAGCAGAGCAATATTTC TCGACACTTTATAAAACCCAGGTAAAGGAACTTAAGGAAGAAATTGAAGAAAAAAACAGA GAAAATTTAAAGAAAATACAGGAACTGCAAAATGAAAAAGAAACTCTTGCAACTCAGTTG GATCTAGCAGAAACAAAAGCTGAGTCTGAGCAGTTAGCTCGAGGACTTCTGGAAGAACAG TATTTTGAATTGACTCAAGAAAGCAAGAAAGCTGCTTCAAGAAATAGGCAAGAGATTACG GATAAAGATCACATAGTTAGTCGGCTCGAAGAAACGAACAGCATGCTAACCAAAGATATT GATTTACTAAGAAAAGAAAATGAAGAGCTAACTGATAAAATGAGGAAGGCAGAGGAAGAA TATAAATTGAAGAAGGAGGAGGAGATCAGTAATCTTAAGGCCGCCTTTGAAAAGAATATC AATACTGAACGAACTCTTAAAACACAGGCTGTTAACAAGTTGGCAGAAATAATGAATCGG AAAGATTTTAAAATTGATAGAAAGAAAGCTAATACACAGGATTTGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 73-433, + strand, RNAz p=0.907145 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 73-433, + strand, RNAz p=0.907145 |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 53-190, gnl|bosTau2|chr24 (25484766-25484903) | |
| 53-190, gnl|canFam2|chr7 (69995867-69995710) | |
| 53-190, gnl|danRer3|chrNA (178387700-178387858) | |
| 53-190, gnl|dasNov1|scaffold_24380 (2394-2243) | |
| 53-190, gnl|echTel1|scaffold_310314 (50835-50678) | |
| 53-190, gnl|fr1|chrUn (196729122-196729282) | |
| 53-190, gnl|galGal2|chr2 (101404520-101404674) | |
| 53-190, gnl|hg17|chr18 (16842014-16842171) | |
| 53-190, gnl|Hg17|chr18 (16842155-16842018) | |
| 53-190, gnl|loxAfr1|scaffold_65614 (5265-5416) | |
| 53-190, gnl|mm7|chr18 (10312868-10313025) | |
| 53-190, gnl|Mm7|chr18 (10313009-10312872) | |
| 53-190, gnl|monDom2|scaffold_21 (35573432-35573580) | |
| 53-190, gnl|oryCun1|scaffold_194601 (139009-139166) | |
| 53-190, gnl|panTro1|chr17 (12746733-12746890) | |
| 53-190, gnl|rheMac2|chr18 (14004168-14004325) | |
| 53-190, gnl|rn3|chr18 (1426398-1426555) | |
| 53-190, gnl|tetNig1|chr15_random (1312280-1312438) | |
| 53-190, gnl|xenTro1|scaffold_549 (600891-600733) | |
| 275-529, gnl|bosTau2|chr11 (65348959-65349213) | |
| 275-529, gnl|canFam2|chr17 (10939666-10939936) | |
| 275-529, gnl|danRer3|chrNA (58678456-58678202) | |
| 275-529, gnl|dasNov1|scaffold_44396 (42408-42139) | |
| 275-529, gnl|echTel1|scaffold_310314 (52981-52722) | |
| 275-529, gnl|fr1|chrUn (263028058-263028325) | |
| 275-529, gnl|galGal2|chr3 (95450420-95450679) | |
| 275-529, gnl|hg17|chr2 (11305562-11305832) | |
| 275-529, gnl|Hg17|chr2 (11305818-11305564) | |
| 275-529, gnl|loxAfr1|scaffold_65614 (4429-4695) | |
| 275-529, gnl|mm7|chr12 (17013463-17013193) | |
| 275-529, gnl|Mm7|chr12 (17013205-17013459) | |
| 275-529, gnl|monDom2|scaffold_1 (97023851-97023583) | |
| 275-529, gnl|oryCun1|scaffold_194601 (137453-137723) | |
| 275-529, gnl|panTro1|chr12 (12022621-12022891) | |
| 275-529, gnl|rheMac2|chr13 (11295227-11295497) | |
| 275-529, gnl|rn3|chr6 (40651275-40651005) | |
| 275-529, gnl|tetNig1|chr10 (1204816-1204572) | |
| 275-529, gnl|xenTro1|scaffold_1042 (156285-156555) | |
| 635-787, gnl|bosTau2|chr24 (25491560-25491712) | |
| 635-787, gnl|canFam2|chr7 (70002874-70002740) | |
| 635-787, gnl|danRer3|chrNA (178381561-178381685) | |
| 635-787, gnl|dasNov1|scaffold_6521 (22937-23052) | |
| 635-787, gnl|echTel1|scaffold_301278 (5725-5592) | |
| 635-787, gnl|fr1|chrUn (196728053-196728161) | |
| 635-787, gnl|galGal2|chr2 (101401716-101401855) | |
| 635-787, gnl|hg17|chr18 (16825106-16825239) | |
| 635-787, gnl|Hg17|chr18 (16825287-16825135) | |
| 635-787, gnl|loxAfr1|scaffold_30194 (31840-31717) | |
| 635-787, gnl|mm7|chr18 (10305779-10305911) | |
| 635-787, gnl|Mm7|chr18 (10305959-10305807) | |
| 635-787, gnl|monDom2|scaffold_21 (35566585-35566710) | |
| 635-787, gnl|oryCun1|scaffold_194601 (125815-125941) | |
| 635-787, gnl|panTro1|chr17 (12729710-12729843) | |
| 635-787, gnl|rheMac2|chr18 (13987687-13987820) | |
| 635-787, gnl|rn3|chr18 (1418308-1418440) | |
| 635-787, gnl|tetNig1|chr15_random (1311266-1311372) | |
| 635-787, gnl|xenTro1|scaffold_549 (606722-606605) | |
| 949-1133, gnl|bosTau2|chr24 (25494776-25494960) | |
| 949-1133, gnl|Hg17|chr18 (16818494-16818310) | |
| 949-1133, gnl|Mm7|chr18 (10302147-10301963) | |
| 1299-1464, gnl|bosTau2|chr24 (25501512-25501677) | |
| 1299-1464, gnl|canFam2|chr7 (70020675-70020480) | |
| 1299-1464, gnl|danRer3|chrNA (178372825-178373005) | |
| 1299-1464, gnl|dasNov1|scaffold_6521 (15587-15798) | |
| 1299-1464, gnl|echTel1|scaffold_112461 (482-677) | |
| 1299-1464, gnl|fr1|chrUn (196726142-196726323) | |
| 1299-1464, gnl|galGal2|chr2 (101396354-101396533) | |
| 1299-1464, gnl|hg17|chr18 (16804291-16804486) | |
| 1299-1464, gnl|Hg17|chr18 (16804472-16804307) | |
| 1299-1464, gnl|loxAfr1|scaffold_92481 (2512-2315) | |
| 1299-1464, gnl|mm7|chr18 (10297353-10297539) | |
| 1299-1464, gnl|Mm7|chr18 (10297528-10297363) | |
| 1299-1464, gnl|monDom2|scaffold_21 (35555120-35555319) | |
| 1299-1464, gnl|oryCun1|scaffold_194601 (108960-109182) | |
| 1299-1464, gnl|panTro1|chr17 (12708365-12708560) | |
| 1299-1464, gnl|rheMac2|chr18 (13966948-13967143) | |
| 1299-1464, gnl|rn3|chr18 (1409720-1409906) | |
| 1299-1464, gnl|tetNig1|chr15_random (1309359-1309540) | |
| 1299-1464, gnl|xenTro1|scaffold_549 (612059-611882) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-190, gnl|bosTau2|chr24 (25484766-25484903) | |
| 53-190, gnl|canFam2|chr7 (69995867-69995710) | |
| 53-190, gnl|danRer3|chrNA (178387700-178387858) | |
| 53-190, gnl|dasNov1|scaffold_24380 (2394-2243) | |
| 53-190, gnl|echTel1|scaffold_310314 (50835-50678) | |
| 53-190, gnl|fr1|chrUn (196729122-196729282) | |
| 53-190, gnl|galGal2|chr2 (101404520-101404674) | |
| 53-190, gnl|hg17|chr18 (16842014-16842171) | |
| 53-190, gnl|Hg17|chr18 (16842155-16842018) | |
| 53-190, gnl|loxAfr1|scaffold_65614 (5265-5416) | |
| 53-190, gnl|mm7|chr18 (10312868-10313025) | |
| 53-190, gnl|Mm7|chr18 (10313009-10312872) | |
| 53-190, gnl|monDom2|scaffold_21 (35573432-35573580) | |
| 53-190, gnl|oryCun1|scaffold_194601 (139009-139166) | |
| 53-190, gnl|panTro1|chr17 (12746733-12746890) | |
| 53-190, gnl|rheMac2|chr18 (14004168-14004325) | |
| 53-190, gnl|rn3|chr18 (1426398-1426555) | |
| 53-190, gnl|tetNig1|chr15_random (1312280-1312438) | |
| 53-190, gnl|xenTro1|scaffold_549 (600891-600733) | |
| 275-529, gnl|bosTau2|chr11 (65348959-65349213) | |
| 275-529, gnl|canFam2|chr17 (10939666-10939936) | |
| 275-529, gnl|danRer3|chrNA (58678456-58678202) | |
| 275-529, gnl|dasNov1|scaffold_44396 (42408-42139) | |
| 275-529, gnl|echTel1|scaffold_310314 (52981-52722) | |
| 275-529, gnl|fr1|chrUn (263028058-263028325) | |
| 275-529, gnl|galGal2|chr3 (95450420-95450679) | |
| 275-529, gnl|hg17|chr2 (11305562-11305832) | |
| 275-529, gnl|Hg17|chr2 (11305818-11305564) | |
| 275-529, gnl|loxAfr1|scaffold_65614 (4429-4695) | |
| 275-529, gnl|mm7|chr12 (17013463-17013193) | |
| 275-529, gnl|Mm7|chr12 (17013205-17013459) | |
| 275-529, gnl|monDom2|scaffold_1 (97023851-97023583) | |
| 275-529, gnl|oryCun1|scaffold_194601 (137453-137723) | |
| 275-529, gnl|panTro1|chr12 (12022621-12022891) | |
| 275-529, gnl|rheMac2|chr13 (11295227-11295497) | |
| 275-529, gnl|rn3|chr6 (40651275-40651005) | |
| 275-529, gnl|tetNig1|chr10 (1204816-1204572) | |
| 275-529, gnl|xenTro1|scaffold_1042 (156285-156555) | |
| 635-787, gnl|bosTau2|chr24 (25491560-25491712) | |
| 635-787, gnl|canFam2|chr7 (70002874-70002740) | |
| 635-787, gnl|danRer3|chrNA (178381561-178381685) | |
| 635-787, gnl|dasNov1|scaffold_6521 (22937-23052) | |
| 635-787, gnl|echTel1|scaffold_301278 (5725-5592) | |
| 635-787, gnl|fr1|chrUn (196728053-196728161) | |
| 635-787, gnl|galGal2|chr2 (101401716-101401855) | |
| 635-787, gnl|hg17|chr18 (16825106-16825239) | |
| 635-787, gnl|Hg17|chr18 (16825287-16825135) | |
| 635-787, gnl|loxAfr1|scaffold_30194 (31840-31717) | |
| 635-787, gnl|mm7|chr18 (10305779-10305911) | |
| 635-787, gnl|Mm7|chr18 (10305959-10305807) | |
| 635-787, gnl|monDom2|scaffold_21 (35566585-35566710) | |
| 635-787, gnl|oryCun1|scaffold_194601 (125815-125941) | |
| 635-787, gnl|panTro1|chr17 (12729710-12729843) | |
| 635-787, gnl|rheMac2|chr18 (13987687-13987820) | |
| 635-787, gnl|rn3|chr18 (1418308-1418440) | |
| 635-787, gnl|tetNig1|chr15_random (1311266-1311372) | |
| 635-787, gnl|xenTro1|scaffold_549 (606722-606605) | |
| 949-1133, gnl|bosTau2|chr24 (25494776-25494960) | |
| 949-1133, gnl|Hg17|chr18 (16818494-16818310) | |
| 949-1133, gnl|Mm7|chr18 (10302147-10301963) | |
| 1299-1464, gnl|bosTau2|chr24 (25501512-25501677) | |
| 1299-1464, gnl|canFam2|chr7 (70020675-70020480) | |
| 1299-1464, gnl|danRer3|chrNA (178372825-178373005) | |
| 1299-1464, gnl|dasNov1|scaffold_6521 (15587-15798) | |
| 1299-1464, gnl|echTel1|scaffold_112461 (482-677) | |
| 1299-1464, gnl|fr1|chrUn (196726142-196726323) | |
| 1299-1464, gnl|galGal2|chr2 (101396354-101396533) | |
| 1299-1464, gnl|hg17|chr18 (16804291-16804486) | |
| 1299-1464, gnl|Hg17|chr18 (16804472-16804307) | |
| 1299-1464, gnl|loxAfr1|scaffold_92481 (2512-2315) | |
| 1299-1464, gnl|mm7|chr18 (10297353-10297539) | |
| 1299-1464, gnl|Mm7|chr18 (10297528-10297363) | |
| 1299-1464, gnl|monDom2|scaffold_21 (35555120-35555319) | |
| 1299-1464, gnl|oryCun1|scaffold_194601 (108960-109182) | |
| 1299-1464, gnl|panTro1|chr17 (12708365-12708560) | |
| 1299-1464, gnl|rheMac2|chr18 (13966948-13967143) | |
| 1299-1464, gnl|rn3|chr18 (1409720-1409906) | |
| 1299-1464, gnl|tetNig1|chr15_random (1309359-1309540) | |
| 1299-1464, gnl|xenTro1|scaffold_549 (612059-611882) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cbl (0.688784) | |
| aor (0.195274) | |
| liv (0.146284) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| aor (0.195274) | |
| liv (0.146284) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| jca (0.11396) |