Ss1.1-Pig4-TMW8031K08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACCGGTGCTGGGGGTGCAGGCCGGCGATTCCCACGTGGTGCACTTTCTCGGGATTAAC GGGTTAGGTTCTCCCTAACTTAACCTGCCTGTGGGCCCGCTGCGGGAAAAGATGCCGAAG ATCAAGTCGGGGGCGAGCGTCCGTCGCCGCGAGCGGCAACAACAACGCCGGGAACTGAAG AGCGCCGGAGGACTCATGTTCAACACGGGCATTGGGCAGCACATTTTGAAAAATCCTCTC ATTGTTAACAGCATTATCGATAAGGCTGCCTTGAGACCAACTGATGTGGTGTTGGAAGTT GGACCTGGAACTGGCAATATGACTGTAAAGTTGCTAGAAAAGGCAAAAAAGGTAATTGCC TGTGAACTTGACCCAAGGCTGGTAGCTGAACTTCACAAAAGAGTTCAGGGCACGCCTTTG GCTAGCAGACTTCAAGTAATGGTGGGTGATGTGTTGAAAACGGATTTGCCATTCTTTGAT GCTTGTGTGGCAAATTTGCCTTATCAGATCTCCTCTCCTTTTGTCTTCAAGCTGTTGCTG CACCGACCTTTTTTCAGATGTGCTATACTTATGTTTCAAAGAGAATTTGCTCTCCGACTA GTTGCAAAACCTGGAGATAAATTATACTGCAGACTCTCAATTAATACTCAACTGTTAGCA CGTGTGGACCATTTAATGAAAGTTGGAAAGAATAACTTCAGACCACCTCCCAAGGTAGAA TCCAGTGTTGTACGGATAGAACCTAAGAATCCACCACCACCTATCAATTTTCAGGAATGG GATGGCCTAGTAAGGATCACCTTTGTTAGGAAAAACAAGACACTGTCTGCTGCATTTAAG TCAAGTGCGGTGCAACAGCTATTGGAAAAAAACTACAGAATTCACTGTTCGGTCCATAAT ATTATAATACCAGAAGATTTCAGCATAGCAGATAAAATACAGCAAATCCTAACCAGCACA GGTTTTAGTGACAAGCGGGCCCGTTCCATGGACATAGATGACTTCATCAGACTGCTACAT GGATTCAATGCAGAAGGTATCCATTTTTCTTAGGTATCTGCAACAAAGAAGTTTTCAAAT TCAAGAGAAGAAAGTGGAATTATATATTCTTAGTAATGTAAGATGAACTATGCTTGAACA CTTATGTGCTTGACTATTTTTGATTTACAGTTGTCACCATTTATTACTCTGAATTTTTAA GGAAATCAGTTCTAAGTATCCAAGGATTTCTTGGGGGGGCTTGATTTTAATAAATAAAGG AAGGACCCAGTTTATACATGATAATCTTCAAGTTCAAGAGCCGCAGACACGCACAACTTT ACACTTAAGATTATTTCTAACAGTGTATTGCATAAATGTTACATTTCTATTTTCTACGTT ATATATTACTGCGAAGATCTAATTTTTTAGGTTTTTAGCTCTTTATTCCTCTGTCCAAGT CATAAAAAAGTCAAACTATGCTTAGTCACATAGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACCGGTGCTGGGGGTGCAGGCCGGCGATTCCCACGTGGTGCACTTTCTCGGGATTAAC GGGTTAGGTTCTCCCTAACTTAACCTGCCTGTGGGCCCGCTGCGGGAAAAGATGCCGAAG ATCAAGTCGGGGGCGAGCGTCCGTCGCCGCGAGCGGCAACAACAACGCCGGGAACTGAAG AGCGCCGGAGGACTCATGTTCAACACGGGCATTGGGCAGCACATTTTGAAAAATCCTCTC ATTGTTAACAGCATTATCGATAAGGCTGCCTTGAGACCAACTGATGTGGTGTTGGAAGTT GGACCTGGAACTGGCAATATGACTGTAAAGTTGCTAGAAAAGGCAAAAAAGGTAATTGCC TGTGAACTTGACCCAAGGCTGGTAGCTGAACTTCACAAAAGAGTTCAGGGCACGCCTTTG GCTAGCAGACTTCAAGTAATGGTGGGTGATGTGTTGAAAACGGATTTGCCATTCTTTGAT GCTTGTGTGGCAAATTTGCCTTATCAGATCTCCTCTCCTTTTGTCTTCAAGCTGTTGCTG CACCGACCTTTTTTCAGATGTGCTATACTTATGTTTCAAAGAGAATTTGCTCTCCGACTA GTTGCAAAACCTGGAGATAAATTATACTGCAGACTCTCAATTAATACTCAACTGTTAGCA CGTGTGGACCATTTAATGAAAGTTGGAAAGAATAACTTCAGACCACCTCCCAAGGTAGAA TCCAGTGTTGTACGGATAGAACCTAAGAATCCACCACCACCTATCAATTTTCAGGAATGG GATGGCCTAGTAAGGATCACCTTTGTTAGGAAAAACAAGACACTGTCTGCTGCATTTAAG TCAAGTGCGGTGCAACAGCTATTGGAAAAAAACTACAGAATTCACTGTTCGGTCCATAAT ATTATAATACCAGAAGATTTCAGCATAGCAGATAAAATACAGCAAATCCTAACCAGCACA GGTTTTAGTGACAAGCGGGCCCGTTCCATGGACATAGATGACTTCATCAGACTGCTACAT GGATTCAATGCAGAAGGTATCCATTTTTCTTAGGTATCTGCAACAAAGAAGTTTTCAAAT TCAAGAGAAGAAAGTGGAATTATATATTCTTAGTAATGTAAGATGAACTATGCTTGAACA CTTATGTGCTTGACTATTTTTGATTTACAGTTGTCACCATTTATTACTCTGAATTTTTAA GGAAATCAGTTCTAAGTATCCAAGGATTTCTTGGGGGGGCTTGATTTTAATAAATAAAGG AAGGACCCAGTTTATACATGATAATCTTCAAGTTCAAGAGCCGCAGACACGCACAACTTT ACACTTAAGATTATTTCTAACAGTGTATTGCATAAATGTTACATTTCTATTTTCTACGTT ATATATTACTGCGAAGATCTAATTTTTTAGGTTTTTAGCTCTTTATTCCTCTGTCCAAGT CATAAAAAAGTCAAACTATGCTTAGTCACATAGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 411-1416, + strand, RNAz p=0.893643 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 411-1416, + strand, RNAz p=0.893643 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 6-191, gnl|bosTau2|chr20 (4267152-4267337) | |
| 6-191, gnl|Hg17|chr5 (61735461-61735277) | |
| 6-191, gnl|Mm7|chr13 (104076612-104076808) | |
| 411-518, gnl|bosTau2|chr20 (4271278-4271385) | |
| 411-518, gnl|canFam2|chr2 (51588231-51588535) | |
| 411-518, gnl|danRer3|chr8 (27691355-27691667) | |
| 411-518, gnl|dasNov1|scaffold_220901 (605-903) | |
| 411-518, gnl|echTel1|scaffold_254854 (11763-11608) | |
| 411-518, gnl|fr1|chrUn (92174342-92174047) | |
| 411-518, gnl|galGal2|chrZ (2843515-2843823) | |
| 411-518, gnl|hg17|chr5 (61730174-61730468) | |
| 411-518, gnl|Hg17|chr5 (61730326-61730218) | |
| 411-518, gnl|loxAfr1|scaffold_25973 (36132-35832) | |
| 411-518, gnl|mm7|chr13 (104079367-104079078) | |
| 411-518, gnl|Mm7|chr13 (104079213-104079319) | |
| 411-518, gnl|monDom2|scaffold_27 (26743427-26743733) | |
| 411-518, gnl|oryCun1|scaffold_165486 (21685-21390) | |
| 411-518, gnl|panTro1|chr4 (54207239-54206945) | |
| 411-518, gnl|rheMac2|chr6 (60131774-60132067) | |
| 411-518, gnl|rn3|chr2 (37989416-37989134) | |
| 411-518, gnl|tetNig1|chr12 (2904495-2904805) | |
| 411-518, gnl|xenTro1|scaffold_457 (467351-466973) | |
| 551-683, gnl|bosTau2|chr20 (4272266-4272398) | |
| 551-683, gnl|canFam2|chr25 (11447907-11447786) | |
| 551-683, gnl|danRer3|chr8 (27689658-27689795) | |
| 551-683, gnl|dasNov1|scaffold_8206 (2030-1875) | |
| 551-683, gnl|echTel1|scaffold_254854 (11935-11812) | |
| 551-683, gnl|fr1|chrUn (92174607-92174463) | |
| 551-683, gnl|galGal2|chrZ (2842509-2842661) | |
| 551-683, gnl|hg17|chr5 (61726060-61726215) | |
| 551-683, gnl|Hg17|chr5 (61726198-61726066) | |
| 551-683, gnl|loxAfr1|scaffold_129367 (2638-2787) | |
| 551-683, gnl|mm7|chr13 (104081219-104081068) | |
| 551-683, gnl|Mm7|chr13 (104081081-104081213) | |
| 551-683, gnl|monDom2|scaffold_27 (26740776-26740931) | |
| 551-683, gnl|oryCun1|scaffold_148534 (973-826) | |
| 551-683, gnl|panTro1|chr4 (54211368-54211213) | |
| 551-683, gnl|rheMac2|chr6 (60127964-60128119) | |
| 551-683, gnl|rn3|chr2 (37991722-37991573) | |
| 551-683, gnl|tetNig1|chr12 (2904203-2904352) | |
| 551-683, gnl|xenTro1|scaffold_457 (467943-467788) | |
| 1007-1472, gnl|bosTau2|chr20 (4277456-4277933) | |
| 1007-1472, gnl|Hg17|chr5 (61720640-61720194) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-191, gnl|bosTau2|chr20 (4267152-4267337) | |
| 6-191, gnl|Hg17|chr5 (61735461-61735277) | |
| 6-191, gnl|Mm7|chr13 (104076612-104076808) | |
| 411-518, gnl|bosTau2|chr20 (4271278-4271385) | |
| 411-518, gnl|canFam2|chr2 (51588231-51588535) | |
| 411-518, gnl|danRer3|chr8 (27691355-27691667) | |
| 411-518, gnl|dasNov1|scaffold_220901 (605-903) | |
| 411-518, gnl|echTel1|scaffold_254854 (11763-11608) | |
| 411-518, gnl|fr1|chrUn (92174342-92174047) | |
| 411-518, gnl|galGal2|chrZ (2843515-2843823) | |
| 411-518, gnl|hg17|chr5 (61730174-61730468) | |
| 411-518, gnl|Hg17|chr5 (61730326-61730218) | |
| 411-518, gnl|loxAfr1|scaffold_25973 (36132-35832) | |
| 411-518, gnl|mm7|chr13 (104079367-104079078) | |
| 411-518, gnl|Mm7|chr13 (104079213-104079319) | |
| 411-518, gnl|monDom2|scaffold_27 (26743427-26743733) | |
| 411-518, gnl|oryCun1|scaffold_165486 (21685-21390) | |
| 411-518, gnl|panTro1|chr4 (54207239-54206945) | |
| 411-518, gnl|rheMac2|chr6 (60131774-60132067) | |
| 411-518, gnl|rn3|chr2 (37989416-37989134) | |
| 411-518, gnl|tetNig1|chr12 (2904495-2904805) | |
| 411-518, gnl|xenTro1|scaffold_457 (467351-466973) | |
| 551-683, gnl|bosTau2|chr20 (4272266-4272398) | |
| 551-683, gnl|canFam2|chr25 (11447907-11447786) | |
| 551-683, gnl|danRer3|chr8 (27689658-27689795) | |
| 551-683, gnl|dasNov1|scaffold_8206 (2030-1875) | |
| 551-683, gnl|echTel1|scaffold_254854 (11935-11812) | |
| 551-683, gnl|fr1|chrUn (92174607-92174463) | |
| 551-683, gnl|galGal2|chrZ (2842509-2842661) | |
| 551-683, gnl|hg17|chr5 (61726060-61726215) | |
| 551-683, gnl|Hg17|chr5 (61726198-61726066) | |
| 551-683, gnl|loxAfr1|scaffold_129367 (2638-2787) | |
| 551-683, gnl|mm7|chr13 (104081219-104081068) | |
| 551-683, gnl|Mm7|chr13 (104081081-104081213) | |
| 551-683, gnl|monDom2|scaffold_27 (26740776-26740931) | |
| 551-683, gnl|oryCun1|scaffold_148534 (973-826) | |
| 551-683, gnl|panTro1|chr4 (54211368-54211213) | |
| 551-683, gnl|rheMac2|chr6 (60127964-60128119) | |
| 551-683, gnl|rn3|chr2 (37991722-37991573) | |
| 551-683, gnl|tetNig1|chr12 (2904203-2904352) | |
| 551-683, gnl|xenTro1|scaffold_457 (467943-467788) | |
| 1007-1472, gnl|bosTau2|chr20 (4277456-4277933) | |
| 1007-1472, gnl|Hg17|chr5 (61720640-61720194) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| aor (0.390549) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| tra (0.123092) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.390549) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| fco (0.157208) | |
| liv (0.146284) | |
| spl (0.143184) | |
| tra (0.123092) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |