Ss1.1-Pig4-TMW8031K19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGTGGGAGGCTCTCTCCCATCATGACTGAGCAGGATGACCTTGGAGACGGGGATGTGCA TTCTATGGTGTACCCACCCTCGGCGGCAAAGATGGCTTCTACTCTGCCCAGTCTGTCTGA GATAAGCAATCCTGAGAACATGGAGAACCTTTTGGATAATCTCAACCTTCTCTCATCACC AACGTCATTAACTGTTTCAACCCAGTCTTCACCAGGCACCATCATGCAGCAGACGCCATG CTACTCATTTGCGCCACCAAACACCAGTCTGAATTCACCCAGCCCCAACTACCAAAAATA CACGTATGGCCAATCCAGCATGAGCCCTTTGCCCCAGATGCCTATGCAAACACTTCAGGA CAGCAAATCGAGTTACGGAGGCATGGCCCAGTATAACTGTGCAGCGGGACTCTTGAAGGA GTTACTTACTTCCGACTCTCCTCCCCATAATGACATTATGACGCCAGTCGATCCGGGGGT GGCCCAACCCAACAGCCGAGTCCTTGGCCAGAATGTGCTGATGGGCCCTAGTTCGGTCAT GCCAGCCTACGGCGGCCAGGCCTCTCATAACAAAATGATGAATCCCAGCTCCCACAGCCA CCCTGGACACGCTCAGTCCACGTCTGCCGTCAATGGGCGTGCCTTGCCCCACGCGGTGAA CACCATGCCCCACGCCTCGGGGATGAACCGCCTGGCCCAGGCGAAGACCGCTTTACAAGT GCCTCTGCCCCACCCCATGCAGATGAACGCCCTGGGGGGCTACTCCCCCGCCAGCACCTG CAACGGCTATGGCAGGATGGGCCTTCTCCACCAGGAGAAGCTCCCGAGTGACTTGGATGG CATGTTCATTGAGCGCTTGGACTGTGACATGGAGTCCATCATCCGGAACGACCTCATGGA TGGAGACACTTTGGATTTTAACTTTGACAATGTGTTGCCCAACCAAAGCTTCCCACACAG TGTCAAGACGACGACACATAGCTGGGTGTCAGGCTAAGCTGAGTGAGTGAGCAGGCTACA CTGAAAAGTACTTCAAATTATCTGACAGGAGGAACTGAGAGAAGCAGTCCAAAGATGTCC TTCACCCCACCTTTTCATTTTCTTGATTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGTGGGAGGCTCTCTCCCATCATGACTGAGCAGGATGACCTTGGAGACGGGGATGTGCA TTCTATGGTGTACCCACCCTCGGCGGCAAAGATGGCTTCTACTCTGCCCAGTCTGTCTGA GATAAGCAATCCTGAGAACATGGAGAACCTTTTGGATAATCTCAACCTTCTCTCATCACC AACGTCATTAACTGTTTCAACCCAGTCTTCACCAGGCACCATCATGCAGCAGACGCCATG CTACTCATTTGCGCCACCAAACACCAGTCTGAATTCACCCAGCCCCAACTACCAAAAATA CACGTATGGCCAATCCAGCATGAGCCCTTTGCCCCAGATGCCTATGCAAACACTTCAGGA CAGCAAATCGAGTTACGGAGGCATGGCCCAGTATAACTGTGCAGCGGGACTCTTGAAGGA GTTACTTACTTCCGACTCTCCTCCCCATAATGACATTATGACGCCAGTCGATCCGGGGGT GGCCCAACCCAACAGCCGAGTCCTTGGCCAGAATGTGCTGATGGGCCCTAGTTCGGTCAT GCCAGCCTACGGCGGCCAGGCCTCTCATAACAAAATGATGAATCCCAGCTCCCACAGCCA CCCTGGACACGCTCAGTCCACGTCTGCCGTCAATGGGCGTGCCTTGCCCCACGCGGTGAA CACCATGCCCCACGCCTCGGGGATGAACCGCCTGGCCCAGGCGAAGACCGCTTTACAAGT GCCTCTGCCCCACCCCATGCAGATGAACGCCCTGGGGGGCTACTCCCCCGCCAGCACCTG CAACGGCTATGGCAGGATGGGCCTTCTCCACCAGGAGAAGCTCCCGAGTGACTTGGATGG CATGTTCATTGAGCGCTTGGACTGTGACATGGAGTCCATCATCCGGAACGACCTCATGGA TGGAGACACTTTGGATTTTAACTTTGACAATGTGTTGCCCAACCAAAGCTTCCCACACAG TGTCAAGACGACGACACATAGCTGGGTGTCAGGCTAAGCTGAGTGAGTGAGCAGGCTACA CTGAAAAGTACTTCAAATTATCTGACAGGAGGAACTGAGAGAAGCAGTCCAAAGATGTCC TTCACCCCACCTTTTCATTTTCTTGATTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 480-599, - strand, RNAz p=0.640478 | |
| 720-919, no strand, RNAz p=0.908918 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 480-599, - strand, RNAz p=0.640478 | |
| 720-919, no strand, RNAz p=0.908918 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-1016, gnl|bosTau2|chr12 (9366233-9367246) | |
| 1-1016, gnl|Hg17|chr13 (40032656-40031648) | |
| 1-1016, gnl|Mm7|chr3 (52471906-52472918) | |
| 812-927, gnl|bosTau2|chr11 (81514240-81514358) | |
| 812-927, gnl|canFam2|chr12 (68687999-68687828) | |
| 812-927, gnl|canFam2|chr12 (68687831-68687999) | |
| 812-927, gnl|danRer3|chr20 (28674866-28674682) | |
| 812-927, gnl|danRer3|chrUn (178957502-178957310) | |
| 812-927, gnl|dasNov1|scaffold_7209 (80697-80526) | |
| 812-927, gnl|dasNov1|scaffold_7209 (80529-80697) | |
| 812-927, gnl|echTel1|scaffold_312052 (142087-141907) | |
| 812-927, gnl|echTel1|scaffold_312052 (141907-142087) | |
| 812-927, gnl|fr1|chrUn (2518642-2518805) | |
| 812-927, gnl|fr1|chrUn (2518795-2518642) | |
| 812-927, gnl|galGal2|chr3 (65704426-65704597) | |
| 812-927, gnl|galGal2|chr3 (65704594-65704426) | |
| 812-927, gnl|hg17|chr17 (18515004-18515175) | |
| 812-927, gnl|hg17|chr6 (109092523-109092691) | |
| 812-927, gnl|Hg17|chr6 (109092539-109092657) | |
| 812-927, gnl|loxAfr1|scaffold_44 (27020-27191) | |
| 812-927, gnl|loxAfr1|scaffold_44 (27188-27020) | |
| 812-927, gnl|mm7|chr10 (42007224-42007395) | |
| 812-927, gnl|mm7|chr10 (42007392-42007224) | |
| 812-927, gnl|Mm7|chr10 (42007374-42007256) | |
| 812-927, gnl|monDom2|scaffold_0 (111841663-111841834) | |
| 812-927, gnl|monDom2|scaffold_0 (111841831-111841663) | |
| 812-927, gnl|oryCun1|scaffold_212162 (153802-153976) | |
| 812-927, gnl|oryCun1|scaffold_212162 (153973-153802) | |
| 812-927, gnl|panTro1|chr5 (111400209-111400038) | |
| 812-927, gnl|panTro1|chr5 (111400041-111400209) | |
| 812-927, gnl|rheMac2|chr4 (155231744-155231915) | |
| 812-927, gnl|rheMac2|chr4 (155231912-155231744) | |
| 812-927, gnl|rn3|chr20 (46206901-46207072) | |
| 812-927, gnl|rn3|chr20 (46207069-46206901) | |
| 812-927, gnl|tetNig1|chr10 (11105622-11105785) | |
| 812-927, gnl|tetNig1|chr14 (3396310-3396150) | |
| 812-927, gnl|xenTro1|scaffold_1737 (35222-35054) | |
| 812-927, gnl|xenTro1|scaffold_1737 (35057-35222) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1016, gnl|bosTau2|chr12 (9366233-9367246) | |
| 1-1016, gnl|Hg17|chr13 (40032656-40031648) | |
| 1-1016, gnl|Mm7|chr3 (52471906-52472918) | |
| 812-927, gnl|bosTau2|chr11 (81514240-81514358) | |
| 812-927, gnl|canFam2|chr12 (68687999-68687828) | |
| 812-927, gnl|canFam2|chr12 (68687831-68687999) | |
| 812-927, gnl|danRer3|chr20 (28674866-28674682) | |
| 812-927, gnl|danRer3|chrUn (178957502-178957310) | |
| 812-927, gnl|dasNov1|scaffold_7209 (80697-80526) | |
| 812-927, gnl|dasNov1|scaffold_7209 (80529-80697) | |
| 812-927, gnl|echTel1|scaffold_312052 (142087-141907) | |
| 812-927, gnl|echTel1|scaffold_312052 (141907-142087) | |
| 812-927, gnl|fr1|chrUn (2518642-2518805) | |
| 812-927, gnl|fr1|chrUn (2518795-2518642) | |
| 812-927, gnl|galGal2|chr3 (65704426-65704597) | |
| 812-927, gnl|galGal2|chr3 (65704594-65704426) | |
| 812-927, gnl|hg17|chr17 (18515004-18515175) | |
| 812-927, gnl|hg17|chr6 (109092523-109092691) | |
| 812-927, gnl|Hg17|chr6 (109092539-109092657) | |
| 812-927, gnl|loxAfr1|scaffold_44 (27020-27191) | |
| 812-927, gnl|loxAfr1|scaffold_44 (27188-27020) | |
| 812-927, gnl|mm7|chr10 (42007224-42007395) | |
| 812-927, gnl|mm7|chr10 (42007392-42007224) | |
| 812-927, gnl|Mm7|chr10 (42007374-42007256) | |
| 812-927, gnl|monDom2|scaffold_0 (111841663-111841834) | |
| 812-927, gnl|monDom2|scaffold_0 (111841831-111841663) | |
| 812-927, gnl|oryCun1|scaffold_212162 (153802-153976) | |
| 812-927, gnl|oryCun1|scaffold_212162 (153973-153802) | |
| 812-927, gnl|panTro1|chr5 (111400209-111400038) | |
| 812-927, gnl|panTro1|chr5 (111400041-111400209) | |
| 812-927, gnl|rheMac2|chr4 (155231744-155231915) | |
| 812-927, gnl|rheMac2|chr4 (155231912-155231744) | |
| 812-927, gnl|rn3|chr20 (46206901-46207072) | |
| 812-927, gnl|rn3|chr20 (46207069-46206901) | |
| 812-927, gnl|tetNig1|chr10 (11105622-11105785) | |
| 812-927, gnl|tetNig1|chr14 (3396310-3396150) | |
| 812-927, gnl|xenTro1|scaffold_1737 (35222-35054) | |
| 812-927, gnl|xenTro1|scaffold_1737 (35057-35222) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| sme (0.305437) | |
| cki (0.165235) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| ova (0.129132) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| cki (0.165235) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| ova (0.129132) |