Non-Coding RNA Search

Ss1.1-Pig4-TMW8031K24.5

Sequence:


               
               CATGTGCAGCACGTCTTCCACGAGGCGGTACGAGAGGCGAGGCGGGAGCTGGAGAAGAAC
TCCCTGGCCCGTCCCCTCTTCATCTCCGAGGAGAGGGCCCTGCACCACCAGGCCCCGCTC
ACGGCCCGGCACGGGCTGGCCAGCTGCACCTTCAACACGCTTTCTACCGCCAGCCTGAAG
GAGATGCCCACTGTGGCCCAGGCCAAGCTGGTCACTGTGAAGTCATCCCGGGCCCAGAGC
AAGCGCAAGGCACCCACCCTGACCCTGCTGAAGGGCTTCAAGATCTTCTGAGGGCCTGTG
CTCAGGATCCCAGGCTCGGCCTGGCGCGAGCACTAAGCAGTCTGAGGAGCAGGGGCTGGC
TTCTCGCCACCGGCTTTCCTTCTGAGGGGATGGCAGCTCTCGCCCCCTGGTGGACAGCTG
ACCCCTTCTCCAGCACCAGGCAGTGTCCCTGACACCCAGGTCACCGTACAGGCAGTAGGG
ACAGGCAGGAATACTGCTCTTATTCCCACCAGGCCTTGGTTTCCATGGTAACCACTGCAT
TCCCTCGCCCTGAAGAAAACAGCCGCCTTGACATTGCAGAGACCTGGAGGCAGTCTGAAG
TGGAAGGATAATGCAGTGTTCATCATGGCCCCATCATCCCTTGCTGTTCCAGCTACAACC
AGGCAAGATGTGGCCCCTAGTGGACAGCTGTATGTGGACAGCTTCAGGAGGCCCTGCATA
AGGCCCCCCCACTTCATTCCCCCTTCCCCAAGGTCCCAGCACCTCCTGGTGGACAGGAAG
GGCAGGGTAGCTGCAGGTTTTGGATGGCCAAATCCTGGCCCTCCCCTTGTCTTCTGACCT
CATAGAACCCCCTGGCAACAAACCCCACAGTTTATCCAAGTAAAAACTAGTTGAAATAAT
CCTACAGGACAGCCTGTAAGAAGCAAAGATGTCCCAGGAAGGGTTATTTCCAGTACTTTG
CCTCTCAGCGATGGTGAGGGAGGGGGCCGAGGGTAGGCCAGTGTGGCGAGCCTCCAGTGT
GTTTTCACCAGGAGACAGGGTCCCCGTATTTTCCCACCTTAAATCACGCCTCTGTCCACA
GATCTTCAGGACCAGCCTGCTCAAGTTTAATGATCAAAGCTGCAGAACAAAGTCATTCTC
TCCAGTGATAATCACCCAGGACTCCAGGGAGCCCACAGCTGGCTGTATCAGACATCCAGT
TGGGCACTGGTAGGGCACTCTTTGTAGCCTGGTCTGGCAGGACCTGGTACCCTTGGCAAT
GAGTCTGCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTGCAGCACGTCTTCCACGAGGCGGTACGAGAGGCGAGGCGGGAGCTGGAGAAGAAC
TCCCTGGCCCGTCCCCTCTTCATCTCCGAGGAGAGGGCCCTGCACCACCAGGCCCCGCTC
ACGGCCCGGCACGGGCTGGCCAGCTGCACCTTCAACACGCTTTCTACCGCCAGCCTGAAG
GAGATGCCCACTGTGGCCCAGGCCAAGCTGGTCACTGTGAAGTCATCCCGGGCCCAGAGC
AAGCGCAAGGCACCCACCCTGACCCTGCTGAAGGGCTTCAAGATCTTCTGAGGGCCTGTG
CTCAGGATCCCAGGCTCGGCCTGGCGCGAGCACTAAGCAGTCTGAGGAGCAGGGGCTGGC
TTCTCGCCACCGGCTTTCCTTCTGAGGGGATGGCAGCTCTCGCCCCCTGGTGGACAGCTG
ACCCCTTCTCCAGCACCAGGCAGTGTCCCTGACACCCAGGTCACCGTACAGGCAGTAGGG
ACAGGCAGGAATACTGCTCTTATTCCCACCAGGCCTTGGTTTCCATGGTAACCACTGCAT
TCCCTCGCCCTGAAGAAAACAGCCGCCTTGACATTGCAGAGACCTGGAGGCAGTCTGAAG
TGGAAGGATAATGCAGTGTTCATCATGGCCCCATCATCCCTTGCTGTTCCAGCTACAACC
AGGCAAGATGTGGCCCCTAGTGGACAGCTGTATGTGGACAGCTTCAGGAGGCCCTGCATA
AGGCCCCCCCACTTCATTCCCCCTTCCCCAAGGTCCCAGCACCTCCTGGTGGACAGGAAG
GGCAGGGTAGCTGCAGGTTTTGGATGGCCAAATCCTGGCCCTCCCCTTGTCTTCTGACCT
CATAGAACCCCCTGGCAACAAACCCCACAGTTTATCCAAGTAAAAACTAGTTGAAATAAT
CCTACAGGACAGCCTGTAAGAAGCAAAGATGTCCCAGGAAGGGTTATTTCCAGTACTTTG
CCTCTCAGCGATGGTGAGGGAGGGGGCCGAGGGTAGGCCAGTGTGGCGAGCCTCCAGTGT
GTTTTCACCAGGAGACAGGGTCCCCGTATTTTCCCACCTTAAATCACGCCTCTGTCCACA
GATCTTCAGGACCAGCCTGCTCAAGTTTAATGATCAAAGCTGCAGAACAAAGTCATTCTC
TCCAGTGATAATCACCCAGGACTCCAGGGAGCCCACAGCTGGCTGTATCAGACATCCAGT
TGGGCACTGGTAGGGCACTCTTTGTAGCCTGGTCTGGCAGGACCTGGTACCCTTGGCAAT
GAGTCTGCTTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               399-503, - strand, RNAz p=0.50723
               

               
               732-851, + strand, RNAz p=0.9478

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-503, - strand, RNAz p=0.50723
               

               
               732-851, + strand, RNAz p=0.9478

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016563, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016563, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1109, gnl|bosTau2|chr10 (8423831-8422747)
               

               
               1-1109, gnl|Hg17|chr15 (63134580-63133200)
               

               
               1-1109, gnl|Mm7|chr9 (65440507-65441444)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1109, gnl|bosTau2|chr10 (8423831-8422747)
               

               
               1-1109, gnl|Hg17|chr15 (63134580-63133200)
               

               
               1-1109, gnl|Mm7|chr9 (65440507-65441444)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               csp (0.161186)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               csp (0.161186)
               

               
               cty (0.10408)

	399-503, - strand, RNAz p=0.50723
	732-851, + strand, RNAz p=0.9478

	1-1109, gnl\|bosTau2\|chr10 (8423831-8422747)
	1-1109, gnl\|Hg17\|chr15 (63134580-63133200)
	1-1109, gnl\|Mm7\|chr9 (65440507-65441444)