Ss1.1-Pig4-TMW8031L03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGCTGGCCGGCTTAGCTGTCCAATGCCCACCCGGAGCTGGGAGGAGGAGCCTGCGTA GAGTGCGTGTGAAGGGAGCAAGGGGAACGGCCCGGGGCCCTTGGTGTTTGACCCGTCCGT CGGTGCGTAAGAAGAAAGGAAAGGAGGCGGCGGTCCAGAGTAGCGGTTGCCGAAATGTTC CGGTGTGGAGGCTTGGCGGCGGGTGCTTTGAAGCAGAAGCTGGCGCCCTTGGTGCGGACG GTGTGCGTCCGAGGCCCGAGGCAGAGGAACCGGCTCCCAGGCAACTTGTTCCAGCGATGG CATGTTCCTCTAGAACTCCAGATGACAAGACAAATGGCTAGCTCTGGTGCATCAGGGGGC AAAATCGATAATACTGTGTTAGTCCTTTTTGTGGGCTTATCAACAATAGGAGCTGGTGCA TATGCCTACAGGACAATAAAAGATAACAAAAAAAGATATAATGAAAGAATTGCAGGATTA GGGCTGACACCAGAAGAGAAGCAGAAAAGGGCCACATCATCTGCTCCAGAAGGAGAGCCG GTTCCTCAGGTCAGGGTACCAAGTCATGTTCCATTCTTGCTCATTGGTGGAGGCACTGCT GCTTTTGCTGCAGCCAGATCCATCCGGGCTCGGGATCCTGGGGCCAGGGTGCTGATTGTA TCTGAAGATCCTGAGCTGCCATACATGCGACCTCCTCTTTCAAAAGAACTGTGGTTTTCA GATGATCCAAATGTCACAAAGACACTGCGATTCAGACAATGGAATGGAAAAGAGAGGAGC ATTTATTTCCAGCCACCTTCTTTCTATGTCTCTGCCCAGGACCTGCCTCACATTGAGAAT GGGGGAGTGGCTGTCCTCACTGGGAAGAAGGTAGTACAGCTGGATGTGAGAGGCAACATG GCGAAACTTAATGATGGCTCTCAAATAACCTATGAAAAGTGCTTGATTGCAACAGGAGGC ACTCCAAGAAGTCTCTCTGCCATCGACAGGGCTGGAGCAGAGGTGAAGAGTAGAACAACA CTTTTCAGAAAGATTGGAGACTTTAGAACCTTAGAGAAGATTTCCCGGGAAGTCAAGTCG ATTACGATTATCGGTGGGGGCTTCCTTGGTAGCGAACTGGCCTGTGCTCTTGGCAGAAAA GCTCGAGCCTTGGGCACAGAGGTGATTCAGCTCTTCCCCGAGAAAGGAAACATGGGAAAG ATCCTCCCTGAATACCTCAGCAACTGGACCATGGAAAAAGTCAGACGAGAAGGGGTTAAG GTGCTGCCCAATGCTATTGTGCAATCAGTTGGAGTCAGCGGTGGCAAGTTACTCATCAAG CTGAAAGATGGCCGGAAGGTAGAAACTGACCATATAGTGGCAGCTGTGGGCCTGGAGCCC AACGTCGAGTTGGCTAAGACTGGTGGACTAGAAATAGACTCTGATTTCGGTGGCTTCCGG GTCAATGCAGAACTCCAGGCCCGCTCTAACATCTGGGTGGCAGGAGATGCCGCATGTTTC TACGATATAAAGTTGGGTAGGAGGCGAGTAGAGCACCATGATCACGCTGTTGTGAGTGGA AGATTGGCCGGAGAAAATATGACTGGAGCTGCTAAGCCATACTGGCATCAGTCAATGTTC TGGAGTGATTTGGGCCCTGATGTTGGCTATGAAGCTATCGGTCTTGTGGACAGTAGTTTG CCTACAGTTGGTGTTTTTGCAAAAGCAACTGCACAAGACAACCCCAAATCTGCCACAGAG CAGTCAGGAACTGGTATCCGATCAGAGAGTGAGACGGAGTCCGAGGCCCCGGAAATCACT CTGCCCGTCGGCAGCCCTGCGGTCCCCCAGGCCCCCACCCAAGGGGAGGACTACGGCAAA GGCGTCATCTTCTACCTCCGGGACAAAGTGGTGGTAGGGATCGTGCTGTGGAACGTCTTC AACCGAATGCCCATCGCGAGGAAGATCATTAAGGACGGTGAGCAGCACGAAGATCTCAAT GAAGTAGCCAAGCTCTTCAACATTCATGAGGACTGAAGGCCCTTGTGCAATAGGCAGGCA CTTCGCCGTCCCTGACAGCAGTCGGATGGGTAAAGGAGCATTTTTTATTGCGCAGCCTTC CTCTGTATGTATGAGTATGAATGATCAGGTCCTTTTTGAATGTCTCAACCATGTAGGCAA ATTCTTAATGTTCACGTCACCGAATAAAACCTGATTCTTCTAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGCTGGCCGGCTTAGCTGTCCAATGCCCACCCGGAGCTGGGAGGAGGAGCCTGCGTA GAGTGCGTGTGAAGGGAGCAAGGGGAACGGCCCGGGGCCCTTGGTGTTTGACCCGTCCGT CGGTGCGTAAGAAGAAAGGAAAGGAGGCGGCGGTCCAGAGTAGCGGTTGCCGAAATGTTC CGGTGTGGAGGCTTGGCGGCGGGTGCTTTGAAGCAGAAGCTGGCGCCCTTGGTGCGGACG GTGTGCGTCCGAGGCCCGAGGCAGAGGAACCGGCTCCCAGGCAACTTGTTCCAGCGATGG CATGTTCCTCTAGAACTCCAGATGACAAGACAAATGGCTAGCTCTGGTGCATCAGGGGGC AAAATCGATAATACTGTGTTAGTCCTTTTTGTGGGCTTATCAACAATAGGAGCTGGTGCA TATGCCTACAGGACAATAAAAGATAACAAAAAAAGATATAATGAAAGAATTGCAGGATTA GGGCTGACACCAGAAGAGAAGCAGAAAAGGGCCACATCATCTGCTCCAGAAGGAGAGCCG GTTCCTCAGGTCAGGGTACCAAGTCATGTTCCATTCTTGCTCATTGGTGGAGGCACTGCT GCTTTTGCTGCAGCCAGATCCATCCGGGCTCGGGATCCTGGGGCCAGGGTGCTGATTGTA TCTGAAGATCCTGAGCTGCCATACATGCGACCTCCTCTTTCAAAAGAACTGTGGTTTTCA GATGATCCAAATGTCACAAAGACACTGCGATTCAGACAATGGAATGGAAAAGAGAGGAGC ATTTATTTCCAGCCACCTTCTTTCTATGTCTCTGCCCAGGACCTGCCTCACATTGAGAAT GGGGGAGTGGCTGTCCTCACTGGGAAGAAGGTAGTACAGCTGGATGTGAGAGGCAACATG GCGAAACTTAATGATGGCTCTCAAATAACCTATGAAAAGTGCTTGATTGCAACAGGAGGC ACTCCAAGAAGTCTCTCTGCCATCGACAGGGCTGGAGCAGAGGTGAAGAGTAGAACAACA CTTTTCAGAAAGATTGGAGACTTTAGAACCTTAGAGAAGATTTCCCGGGAAGTCAAGTCG ATTACGATTATCGGTGGGGGCTTCCTTGGTAGCGAACTGGCCTGTGCTCTTGGCAGAAAA GCTCGAGCCTTGGGCACAGAGGTGATTCAGCTCTTCCCCGAGAAAGGAAACATGGGAAAG ATCCTCCCTGAATACCTCAGCAACTGGACCATGGAAAAAGTCAGACGAGAAGGGGTTAAG GTGCTGCCCAATGCTATTGTGCAATCAGTTGGAGTCAGCGGTGGCAAGTTACTCATCAAG CTGAAAGATGGCCGGAAGGTAGAAACTGACCATATAGTGGCAGCTGTGGGCCTGGAGCCC AACGTCGAGTTGGCTAAGACTGGTGGACTAGAAATAGACTCTGATTTCGGTGGCTTCCGG GTCAATGCAGAACTCCAGGCCCGCTCTAACATCTGGGTGGCAGGAGATGCCGCATGTTTC TACGATATAAAGTTGGGTAGGAGGCGAGTAGAGCACCATGATCACGCTGTTGTGAGTGGA AGATTGGCCGGAGAAAATATGACTGGAGCTGCTAAGCCATACTGGCATCAGTCAATGTTC TGGAGTGATTTGGGCCCTGATGTTGGCTATGAAGCTATCGGTCTTGTGGACAGTAGTTTG CCTACAGTTGGTGTTTTTGCAAAAGCAACTGCACAAGACAACCCCAAATCTGCCACAGAG CAGTCAGGAACTGGTATCCGATCAGAGAGTGAGACGGAGTCCGAGGCCCCGGAAATCACT CTGCCCGTCGGCAGCCCTGCGGTCCCCCAGGCCCCCACCCAAGGGGAGGACTACGGCAAA GGCGTCATCTTCTACCTCCGGGACAAAGTGGTGGTAGGGATCGTGCTGTGGAACGTCTTC AACCGAATGCCCATCGCGAGGAAGATCATTAAGGACGGTGAGCAGCACGAAGATCTCAAT GAAGTAGCCAAGCTCTTCAACATTCATGAGGACTGAAGGCCCTTGTGCAATAGGCAGGCA CTTCGCCGTCCCTGACAGCAGTCGGATGGGTAAAGGAGCATTTTTTATTGCGCAGCCTTC CTCTGTATGTATGAGTATGAATGATCAGGTCCTTTTTGAATGTCTCAACCATGTAGGCAA ATTCTTAATGTTCACGTCACCGAATAAAACCTGATTCTTCTAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 5-286, gnl|bosTau2|chrX (4005625-4005344) | |
| 5-286, gnl|Hg17|chrX (129025330-129025054) | |
| 5-286, gnl|Mm7|chrX (43605757-43605478) | |
| 415-523, gnl|bosTau2|chrX (3992734-3992626) | |
| 415-523, gnl|canFam2|chrX (104356948-104356850) | |
| 415-523, gnl|dasNov1|scaffold_4102 (43303-43401) | |
| 415-523, gnl|hg17|chr10 (19064932-19065030) | |
| 415-523, gnl|Hg17|chrX (129009087-129008979) | |
| 415-523, gnl|loxAfr1|scaffold_19904 (4425-4328) | |
| 415-523, gnl|mm7|chrX (43592123-43592034) | |
| 415-523, gnl|Mm7|chrX (43592132-43592024) | |
| 415-523, gnl|oryCun1|scaffold_198443 (86805-86902) | |
| 415-523, gnl|panTro1|chr8 (19372227-19372325) | |
| 415-523, gnl|rheMac2|chr9 (19045477-19045575) | |
| 415-523, gnl|rn3|chrX (134966243-134966154) | |
| 648-779, gnl|bosTau2|chrX (3991176-3991045) | |
| 648-779, gnl|canFam2|chrX (104355371-104355783) | |
| 648-779, gnl|dasNov1|scaffold_4102 (45249-44839) | |
| 648-779, gnl|fr1|chrUn (203018333-203018674) | |
| 648-779, gnl|galGal2|chr4 (201010-201406) | |
| 648-779, gnl|hg17|chrX (129007001-129007415) | |
| 648-779, gnl|Hg17|chrX (129007134-129007003) | |
| 648-779, gnl|loxAfr1|scaffold_19904 (2982-3396) | |
| 648-779, gnl|mm7|chrX (43589330-43589739) | |
| 648-779, gnl|Mm7|chrX (43589463-43589332) | |
| 648-779, gnl|monDom2|scaffold_126 (2730068-2730440) | |
| 648-779, gnl|oryCun1|scaffold_198443 (88242-87831) | |
| 648-779, gnl|panTro1|chrX (133246287-133246701) | |
| 648-779, gnl|rheMac2|chrX (128382037-128382453) | |
| 648-779, gnl|rn3|chrX (134963978-134964389) | |
| 648-779, gnl|tetNig1|chr7 (5786077-5785705) | |
| 648-779, gnl|xenTro1|scaffold_561 (781092-780663) | |
| 1031-1154, gnl|bosTau2|chrX (3983517-3983395) | |
| 1031-1154, gnl|canFam2|chrX (104347240-104347387) | |
| 1031-1154, gnl|dasNov1|scaffold_4102 (61342-61194) | |
| 1031-1154, gnl|echTel1|scaffold_293952 (71294-71440) | |
| 1031-1154, gnl|fr1|chrUn (203017346-203017488) | |
| 1031-1154, gnl|galGal2|chr4 (198067-198190) | |
| 1031-1154, gnl|hg17|chrX (128998072-128998219) | |
| 1031-1154, gnl|Hg17|chrX (128998213-128998091) | |
| 1031-1154, gnl|loxAfr1|scaffold_29957 (1650-1495) | |
| 1031-1154, gnl|mm7|chrX (43576748-43576895) | |
| 1031-1154, gnl|Mm7|chrX (43576889-43576767) | |
| 1031-1154, gnl|monDom2|scaffold_126 (2726083-2726238) | |
| 1031-1154, gnl|oryCun1|scaffold_198443 (99021-98874) | |
| 1031-1154, gnl|panTro1|chrX (133237372-133237519) | |
| 1031-1154, gnl|rheMac2|chrX (128372567-128372714) | |
| 1031-1154, gnl|rn3|chrX (134952239-134952386) | |
| 1031-1154, gnl|tetNig1|chr7 (5786979-5786855) | |
| 1479-1640, gnl|bosTau2|chrX (3979915-3979752) | |
| 1479-1640, gnl|Hg17|chrX (128992966-128992803) | |
| 1479-1640, gnl|Mm7|chrX (43572520-43572358) | |
| 1943-2204, gnl|bosTau2|chrX (3975662-3975393) | |
| 1943-2204, gnl|Hg17|chrX (128989140-128988872) | |
| 1943-2204, gnl|Mm7|chrX (43567442-43567195) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-286, gnl|bosTau2|chrX (4005625-4005344) | |
| 5-286, gnl|Hg17|chrX (129025330-129025054) | |
| 5-286, gnl|Mm7|chrX (43605757-43605478) | |
| 415-523, gnl|bosTau2|chrX (3992734-3992626) | |
| 415-523, gnl|canFam2|chrX (104356948-104356850) | |
| 415-523, gnl|dasNov1|scaffold_4102 (43303-43401) | |
| 415-523, gnl|hg17|chr10 (19064932-19065030) | |
| 415-523, gnl|Hg17|chrX (129009087-129008979) | |
| 415-523, gnl|loxAfr1|scaffold_19904 (4425-4328) | |
| 415-523, gnl|mm7|chrX (43592123-43592034) | |
| 415-523, gnl|Mm7|chrX (43592132-43592024) | |
| 415-523, gnl|oryCun1|scaffold_198443 (86805-86902) | |
| 415-523, gnl|panTro1|chr8 (19372227-19372325) | |
| 415-523, gnl|rheMac2|chr9 (19045477-19045575) | |
| 415-523, gnl|rn3|chrX (134966243-134966154) | |
| 648-779, gnl|bosTau2|chrX (3991176-3991045) | |
| 648-779, gnl|canFam2|chrX (104355371-104355783) | |
| 648-779, gnl|dasNov1|scaffold_4102 (45249-44839) | |
| 648-779, gnl|fr1|chrUn (203018333-203018674) | |
| 648-779, gnl|galGal2|chr4 (201010-201406) | |
| 648-779, gnl|hg17|chrX (129007001-129007415) | |
| 648-779, gnl|Hg17|chrX (129007134-129007003) | |
| 648-779, gnl|loxAfr1|scaffold_19904 (2982-3396) | |
| 648-779, gnl|mm7|chrX (43589330-43589739) | |
| 648-779, gnl|Mm7|chrX (43589463-43589332) | |
| 648-779, gnl|monDom2|scaffold_126 (2730068-2730440) | |
| 648-779, gnl|oryCun1|scaffold_198443 (88242-87831) | |
| 648-779, gnl|panTro1|chrX (133246287-133246701) | |
| 648-779, gnl|rheMac2|chrX (128382037-128382453) | |
| 648-779, gnl|rn3|chrX (134963978-134964389) | |
| 648-779, gnl|tetNig1|chr7 (5786077-5785705) | |
| 648-779, gnl|xenTro1|scaffold_561 (781092-780663) | |
| 1031-1154, gnl|bosTau2|chrX (3983517-3983395) | |
| 1031-1154, gnl|canFam2|chrX (104347240-104347387) | |
| 1031-1154, gnl|dasNov1|scaffold_4102 (61342-61194) | |
| 1031-1154, gnl|echTel1|scaffold_293952 (71294-71440) | |
| 1031-1154, gnl|fr1|chrUn (203017346-203017488) | |
| 1031-1154, gnl|galGal2|chr4 (198067-198190) | |
| 1031-1154, gnl|hg17|chrX (128998072-128998219) | |
| 1031-1154, gnl|Hg17|chrX (128998213-128998091) | |
| 1031-1154, gnl|loxAfr1|scaffold_29957 (1650-1495) | |
| 1031-1154, gnl|mm7|chrX (43576748-43576895) | |
| 1031-1154, gnl|Mm7|chrX (43576889-43576767) | |
| 1031-1154, gnl|monDom2|scaffold_126 (2726083-2726238) | |
| 1031-1154, gnl|oryCun1|scaffold_198443 (99021-98874) | |
| 1031-1154, gnl|panTro1|chrX (133237372-133237519) | |
| 1031-1154, gnl|rheMac2|chrX (128372567-128372714) | |
| 1031-1154, gnl|rn3|chrX (134952239-134952386) | |
| 1031-1154, gnl|tetNig1|chr7 (5786979-5786855) | |
| 1479-1640, gnl|bosTau2|chrX (3979915-3979752) | |
| 1479-1640, gnl|Hg17|chrX (128992966-128992803) | |
| 1479-1640, gnl|Mm7|chrX (43572520-43572358) | |
| 1943-2204, gnl|bosTau2|chrX (3975662-3975393) | |
| 1943-2204, gnl|Hg17|chrX (128989140-128988872) | |
| 1943-2204, gnl|Mm7|chrX (43567442-43567195) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| elu (0.385356) | |
| bla (0.248694) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| sin (0.174948) | |
| nje (0.16592) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| clu (0.119646) | |
| med (0.116252) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| bla (0.248694) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| ton (0.1755) | |
| sin (0.174948) | |
| nje (0.16592) | |
| eli (0.151814) | |
| fat (0.147427) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| clu (0.119646) | |
| med (0.116252) |