Ss1.1-Pig4-TMW8031L05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAGAGAAACTGAGGCTCGGAGAGGAAGCAACCGCCCCGAAACCCACAGGAAACCTGTTT CCCTTCGTTGGACCCACTGTGAAAGGCCTGGCCCCAGGTGAGGACGTGCACCCTCAGATG TGAACGAGGTCGCGCCCCTGTAGCTGCTTTGGTGCCTGGATTCGAACCGGGGCTGAGCCG AGATCTGAGTCCTCCGAGGCCTCGTGGAGCCAAGATGACCCACTCTTTGGTTTGCCCAGA GACTGTTAGCAAGGTAAGTTCTGTGTTGAATCGTAACTACCGGCAGTTTGGAAAGAAACA CCTGTTTGACCAGGATGAGGAGACGTGCTGGAACTCAGATCAGGGCCCCTCCCAGTGGAT AATACTGGAGTTTCCCCAGCGCATCTGTGTCTCCCAACTGCAGATCCAGTTCCAGGGGGG CTTCTCCAGTCGCCAGGGTCGTCTGGAAGGTTCCCAGGGGAGTGAGGCTCTTGCTAAGAT TGTGGACTTTTACCCTGAGGACAACAACTCGCTTCAGACATTCCCTGTGCCAGCTGCTGA GGTAGACCGGCTGAAGGTGACATTTGAGGACACCACTGATTTCTTTGGCCGAGTGGTCAT CTACCACCTTCGGGTACTAGGGGAGAAGAAAGTATGAGACCGCTGGGTGGCTCTCTCCTA CAGGAAGCCCTCAGAGAAGCACAGCTTAGTCTTTCAAGTTCTGCACAGAAGGTTTATTGG CTCCTCTTGGAAAGGGCCCCCTCCCACCGTCTGTCCAGGAGCTGCCTTTGAAGCCAGGTC TGGGTTCCCCCAGCTCTGGGTTGATCATTTTGTTCCCTGAGTGTCTGAGTCCCTGGCAGA TGATGTTCACTCGGCATCGGCGGGCACCAGGTTGCTCTGGAAGAGTTTGAGGATGTGGTT CTCAATCACCTGTTGCACTTTCCGATATCCCAGAGCCACGGCGAGGTCCATTGGGGTGTA GCCAGAGTCTGCCTCAGTGGTGAGATCAGCTCCTCGGGCCAGCAGGGCCTCGACACACTT CACATGGTTCCCACGCACGGCGTACAGCAGTGGTGTCCCTCCGTTCCAGTCATAGATGTT GATGTCCACATCACGCTCCAGCAGCAGCCCCACAATATCTGTATAGCCGCCCGTGCTGGC CAGTGACAGGGCGCTCTCCCGTTCCTTGGCCAAGATGTGGGGGTCGGCACCCCACTCGAG CAAGAAGCGGACGGTCTCGATCTCTCCGAAGGCAGAGGCCCAGATGAGCGGAGTGAAGCC TCGCTCGTCCGGCTTGTTGATGAGGTTGTCGCCTTTCCTCAGATGCTCCTTCAGCTGGCT CAGCTCCCCCTGGGCTGCAAGCTGGTGGATGGACAGGGAGTCCAAGGTTGCTGGCAGGGC GGACACCTCATTCCCCCGTTGCCGGTTGGTGAGGGTTGTGGAGTGCTTCAGGGAGCTGCC CTGAGGTGAGGAGGTGCCAGCATCTGGTTCAGCAATCCCAGGCTCTGGGGTGCAGGGGAA AAGACTGAGGACCACAGTGTCTGAACTGTCAGGGGCCTCATCCCTGGGGTCTTCTGGGTC CCCAAATTCTGGGGTGGAAGCCTGCTGGGTCAGGCTGAGATCCTCTGCAGGGTGGGTGGG CTCCATGGGGGAAGCTCCCACGAGCCTCCTCTGTTACCCTACGTCGCAAGCTCGAGTTCC CCCAAACTTGGGGGTCCAATTCACAAACTTTTCTCTTCCAACCGATGTAGGAGGGAGCAA GATGGAGCCTGGACCCTCTGCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAGAGAAACTGAGGCTCGGAGAGGAAGCAACCGCCCCGAAACCCACAGGAAACCTGTTT CCCTTCGTTGGACCCACTGTGAAAGGCCTGGCCCCAGGTGAGGACGTGCACCCTCAGATG TGAACGAGGTCGCGCCCCTGTAGCTGCTTTGGTGCCTGGATTCGAACCGGGGCTGAGCCG AGATCTGAGTCCTCCGAGGCCTCGTGGAGCCAAGATGACCCACTCTTTGGTTTGCCCAGA GACTGTTAGCAAGGTAAGTTCTGTGTTGAATCGTAACTACCGGCAGTTTGGAAAGAAACA CCTGTTTGACCAGGATGAGGAGACGTGCTGGAACTCAGATCAGGGCCCCTCCCAGTGGAT AATACTGGAGTTTCCCCAGCGCATCTGTGTCTCCCAACTGCAGATCCAGTTCCAGGGGGG CTTCTCCAGTCGCCAGGGTCGTCTGGAAGGTTCCCAGGGGAGTGAGGCTCTTGCTAAGAT TGTGGACTTTTACCCTGAGGACAACAACTCGCTTCAGACATTCCCTGTGCCAGCTGCTGA GGTAGACCGGCTGAAGGTGACATTTGAGGACACCACTGATTTCTTTGGCCGAGTGGTCAT CTACCACCTTCGGGTACTAGGGGAGAAGAAAGTATGAGACCGCTGGGTGGCTCTCTCCTA CAGGAAGCCCTCAGAGAAGCACAGCTTAGTCTTTCAAGTTCTGCACAGAAGGTTTATTGG CTCCTCTTGGAAAGGGCCCCCTCCCACCGTCTGTCCAGGAGCTGCCTTTGAAGCCAGGTC TGGGTTCCCCCAGCTCTGGGTTGATCATTTTGTTCCCTGAGTGTCTGAGTCCCTGGCAGA TGATGTTCACTCGGCATCGGCGGGCACCAGGTTGCTCTGGAAGAGTTTGAGGATGTGGTT CTCAATCACCTGTTGCACTTTCCGATATCCCAGAGCCACGGCGAGGTCCATTGGGGTGTA GCCAGAGTCTGCCTCAGTGGTGAGATCAGCTCCTCGGGCCAGCAGGGCCTCGACACACTT CACATGGTTCCCACGCACGGCGTACAGCAGTGGTGTCCCTCCGTTCCAGTCATAGATGTT GATGTCCACATCACGCTCCAGCAGCAGCCCCACAATATCTGTATAGCCGCCCGTGCTGGC CAGTGACAGGGCGCTCTCCCGTTCCTTGGCCAAGATGTGGGGGTCGGCACCCCACTCGAG CAAGAAGCGGACGGTCTCGATCTCTCCGAAGGCAGAGGCCCAGATGAGCGGAGTGAAGCC TCGCTCGTCCGGCTTGTTGATGAGGTTGTCGCCTTTCCTCAGATGCTCCTTCAGCTGGCT CAGCTCCCCCTGGGCTGCAAGCTGGTGGATGGACAGGGAGTCCAAGGTTGCTGGCAGGGC GGACACCTCATTCCCCCGTTGCCGGTTGGTGAGGGTTGTGGAGTGCTTCAGGGAGCTGCC CTGAGGTGAGGAGGTGCCAGCATCTGGTTCAGCAATCCCAGGCTCTGGGGTGCAGGGGAA AAGACTGAGGACCACAGTGTCTGAACTGTCAGGGGCCTCATCCCTGGGGTCTTCTGGGTC CCCAAATTCTGGGGTGGAAGCCTGCTGGGTCAGGCTGAGATCCTCTGCAGGGTGGGTGGG CTCCATGGGGGAAGCTCCCACGAGCCTCCTCTGTTACCCTACGTCGCAAGCTCGAGTTCC CCCAAACTTGGGGGTCCAATTCACAAACTTTTCTCTTCCAACCGATGTAGGAGGGAGCAA GATGGAGCCTGGACCCTCTGCGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 341-1192, - strand, RNAz p=0.724482 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 341-1192, - strand, RNAz p=0.724482 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 146-258, gnl|bosTau2|chr7 (2633743-2633631) | |
| 146-258, gnl|Hg17|chr19 (19174953-19174827) | |
| 341-451, gnl|bosTau2|chr7 (2632988-2632878) | |
| 341-451, gnl|canFam2|chr20 (46980264-46980147) | |
| 341-451, gnl|danRer3|chr22 (25285698-25285805) | |
| 341-451, gnl|dasNov1|scaffold_7860 (11428-11326) | |
| 341-451, gnl|fr1|chrUn (109024265-109024382) | |
| 341-451, gnl|hg17|chr19 (19174267-19174384) | |
| 341-451, gnl|Hg17|chr19 (19174387-19174277) | |
| 341-451, gnl|loxAfr1|scaffold_48623 (1969-1852) | |
| 341-451, gnl|mm7|chr8 (68587734-68587617) | |
| 341-451, gnl|Mm7|chr8 (68587612-68587722) | |
| 341-451, gnl|monDom2|scaffold_122 (1794714-1794831) | |
| 341-451, gnl|panTro1|chr20 (20249634-20249751) | |
| 341-451, gnl|rheMac2|chr19 (18850633-18850750) | |
| 341-451, gnl|rn3|chr16 (19773035-19773152) | |
| 341-451, gnl|tetNig1|chr1_random (3348657-3348540) | |
| 511-919, gnl|bosTau2|chr7 (2632495-2632099) | |
| 511-919, gnl|Hg17|chr19 (19173856-19173456) | |
| 511-919, gnl|Mm7|chr8 (68588294-68588668) | |
| 1066-1192, gnl|bosTau2|chr7 (2630412-2630286) | |
| 1066-1192, gnl|canFam2|chr20 (46983050-46982906) | |
| 1066-1192, gnl|danRer3|chr22 (25279599-25279740) | |
| 1066-1192, gnl|dasNov1|scaffold_13577 (7306-7446) | |
| 1066-1192, gnl|echTel1|scaffold_112970 (823-682) | |
| 1066-1192, gnl|fr1|chrUn (109022598-109022743) | |
| 1066-1192, gnl|hg17|chr19 (19169903-19170047) | |
| 1066-1192, gnl|Hg17|chr19 (19170041-19169915) | |
| 1066-1192, gnl|loxAfr1|scaffold_48623 (5239-5098) | |
| 1066-1192, gnl|mm7|chr8 (68590376-68590238) | |
| 1066-1192, gnl|Mm7|chr8 (68590242-68590368) | |
| 1066-1192, gnl|monDom2|scaffold_122 (1788112-1788256) | |
| 1066-1192, gnl|oryCun1|scaffold_172486 (6001-5857) | |
| 1066-1192, gnl|panTro1|chr20 (20245285-20245429) | |
| 1066-1192, gnl|rheMac2|chr19 (18846347-18846488) | |
| 1066-1192, gnl|rn3|chr16 (19770634-19770776) | |
| 1066-1192, gnl|tetNig1|chr1_random (3350252-3350108) | |
| 1436-1636, gnl|bosTau2|chr7 (2627977-2627777) | |
| 1436-1636, gnl|Hg17|chr19 (19165946-19165746) | |
| 1436-1636, gnl|Mm7|chr8 (68593229-68593429) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 146-258, gnl|bosTau2|chr7 (2633743-2633631) | |
| 146-258, gnl|Hg17|chr19 (19174953-19174827) | |
| 341-451, gnl|bosTau2|chr7 (2632988-2632878) | |
| 341-451, gnl|canFam2|chr20 (46980264-46980147) | |
| 341-451, gnl|danRer3|chr22 (25285698-25285805) | |
| 341-451, gnl|dasNov1|scaffold_7860 (11428-11326) | |
| 341-451, gnl|fr1|chrUn (109024265-109024382) | |
| 341-451, gnl|hg17|chr19 (19174267-19174384) | |
| 341-451, gnl|Hg17|chr19 (19174387-19174277) | |
| 341-451, gnl|loxAfr1|scaffold_48623 (1969-1852) | |
| 341-451, gnl|mm7|chr8 (68587734-68587617) | |
| 341-451, gnl|Mm7|chr8 (68587612-68587722) | |
| 341-451, gnl|monDom2|scaffold_122 (1794714-1794831) | |
| 341-451, gnl|panTro1|chr20 (20249634-20249751) | |
| 341-451, gnl|rheMac2|chr19 (18850633-18850750) | |
| 341-451, gnl|rn3|chr16 (19773035-19773152) | |
| 341-451, gnl|tetNig1|chr1_random (3348657-3348540) | |
| 511-919, gnl|bosTau2|chr7 (2632495-2632099) | |
| 511-919, gnl|Hg17|chr19 (19173856-19173456) | |
| 511-919, gnl|Mm7|chr8 (68588294-68588668) | |
| 1066-1192, gnl|bosTau2|chr7 (2630412-2630286) | |
| 1066-1192, gnl|canFam2|chr20 (46983050-46982906) | |
| 1066-1192, gnl|danRer3|chr22 (25279599-25279740) | |
| 1066-1192, gnl|dasNov1|scaffold_13577 (7306-7446) | |
| 1066-1192, gnl|echTel1|scaffold_112970 (823-682) | |
| 1066-1192, gnl|fr1|chrUn (109022598-109022743) | |
| 1066-1192, gnl|hg17|chr19 (19169903-19170047) | |
| 1066-1192, gnl|Hg17|chr19 (19170041-19169915) | |
| 1066-1192, gnl|loxAfr1|scaffold_48623 (5239-5098) | |
| 1066-1192, gnl|mm7|chr8 (68590376-68590238) | |
| 1066-1192, gnl|Mm7|chr8 (68590242-68590368) | |
| 1066-1192, gnl|monDom2|scaffold_122 (1788112-1788256) | |
| 1066-1192, gnl|oryCun1|scaffold_172486 (6001-5857) | |
| 1066-1192, gnl|panTro1|chr20 (20245285-20245429) | |
| 1066-1192, gnl|rheMac2|chr19 (18846347-18846488) | |
| 1066-1192, gnl|rn3|chr16 (19770634-19770776) | |
| 1066-1192, gnl|tetNig1|chr1_random (3350252-3350108) | |
| 1436-1636, gnl|bosTau2|chr7 (2627977-2627777) | |
| 1436-1636, gnl|Hg17|chr19 (19165946-19165746) | |
| 1436-1636, gnl|Mm7|chr8 (68593229-68593429) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cst (0.420109) | |
| eru (0.360144) | |
| che (0.272628) | |
| cov (0.264306) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nco (0.161734) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.420109) | |
| eru (0.360144) | |
| che (0.272628) | |
| cov (0.264306) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| nco (0.161734) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) |