Non-Coding RNA Search

Ss1.1-Pig4-TMW8031L08.3

Sequence:


               
               TGCGAATTTTTTGAAATTCCAATGAAAATTCTTCCAAATGTTCGGAGTTCTTCTGAGATC
TATGGCCTAATGAAAGCTGGGGCCTTGGAAGGTGTGCCAATATCCGGGTGTTTGGGTGAC
CAGTCTGCTGCATTGGTGGGACAAATGTGCTTCCAGGATGGACAAGCCAAAAACACGTAT
GGAACAGGCTGTTTCTTATTATGTAACACTGGCCGTAAGTGTGTATTTTCTGAACATGGC
CTTCTGACTACAGTGGCTTACAAACTTGGCAGAGACAAACCAGTATATTATGCATTAGAA
GGTTCGGTAGCTATAGCTGGTGCTGTTGTTCGCTGGCTAAGAGACAATCTTGGAATTATA
AAGACCTCTGAGGAAATTGAAAAACTTGCTAAAGAAGTAGGTACTTCTTATGGCTGCTAT
TTCGTCCCAGCGTTTTCAGGGCTGTATGCACCATATTGGGAGCCTAGTGCAAGAGGGATC
ATCTGTGGGCTTACTCAGTTCACCAATAGATGCCATATTGCTTTTGCTGCATTGGAAGCT
GTTTGTTTCCAAACCCGAGAGATTTTGGATGCCATGAACCGTGACTGTGGAATGCCACTC
AGACACCTGCAGGTAGATGGAGGGATGACCAACAACAAAATTCTCATGCAGCTCCAAGCA
GACATTCTATATATCCCAGTAGTGAAGCCCTCCATGCCTGAAACAACTGCCCTGGGAGCC
GCCATGGCAGCAGGAGCTGCTGAAGGAGTTGGTGTATGGAGTCTTGACCCTGAGGACTTG
TCAGCTGTCACAGTGGAGCGGTTTGAACCTCAGATCAACGCTGAGGAAAGTGAAATCCGT
TATTCTACGTGGAAGAAAGCCGTGATGAAGTCAATGGGTTGGGTTACAACTCAGTCTTCA
GAAAGTGGTATGCCATAAATAATACCGACTCGTGGATTCCAAAGACGCGAATTCTTTACC
TATTGAAAGAATCCAGCAATTCTGTCTTTTAATGTCATGACACTATTCATAGACTCTGAT
TTTATTTATAAGCCACTAGCTGCATGACCCTCCAAGTAGATCTGTGGCTTGAAATAAAGA
AAATGCAGCAGAAAGAATGATATAGAAACATTTGGTGTGTTTTTTAATGTCAGTGGTTAA
AATTTGACCAACGGCTTGAAATAATGAGCCCCTCTTTTGCCATCATTTCCTGCCTCATTC
CCTATAAGATCTACCAAGAACCCAGATCCTGTCCATTGAAATCTTTTCTCACACATATTC
AAACTTTGATGGGCCAGTATTTGATTCTTGTACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGAATTTTTTGAAATTCCAATGAAAATTCTTCCAAATGTTCGGAGTTCTTCTGAGATC
TATGGCCTAATGAAAGCTGGGGCCTTGGAAGGTGTGCCAATATCCGGGTGTTTGGGTGAC
CAGTCTGCTGCATTGGTGGGACAAATGTGCTTCCAGGATGGACAAGCCAAAAACACGTAT
GGAACAGGCTGTTTCTTATTATGTAACACTGGCCGTAAGTGTGTATTTTCTGAACATGGC
CTTCTGACTACAGTGGCTTACAAACTTGGCAGAGACAAACCAGTATATTATGCATTAGAA
GGTTCGGTAGCTATAGCTGGTGCTGTTGTTCGCTGGCTAAGAGACAATCTTGGAATTATA
AAGACCTCTGAGGAAATTGAAAAACTTGCTAAAGAAGTAGGTACTTCTTATGGCTGCTAT
TTCGTCCCAGCGTTTTCAGGGCTGTATGCACCATATTGGGAGCCTAGTGCAAGAGGGATC
ATCTGTGGGCTTACTCAGTTCACCAATAGATGCCATATTGCTTTTGCTGCATTGGAAGCT
GTTTGTTTCCAAACCCGAGAGATTTTGGATGCCATGAACCGTGACTGTGGAATGCCACTC
AGACACCTGCAGGTAGATGGAGGGATGACCAACAACAAAATTCTCATGCAGCTCCAAGCA
GACATTCTATATATCCCAGTAGTGAAGCCCTCCATGCCTGAAACAACTGCCCTGGGAGCC
GCCATGGCAGCAGGAGCTGCTGAAGGAGTTGGTGTATGGAGTCTTGACCCTGAGGACTTG
TCAGCTGTCACAGTGGAGCGGTTTGAACCTCAGATCAACGCTGAGGAAAGTGAAATCCGT
TATTCTACGTGGAAGAAAGCCGTGATGAAGTCAATGGGTTGGGTTACAACTCAGTCTTCA
GAAAGTGGTATGCCATAAATAATACCGACTCGTGGATTCCAAAGACGCGAATTCTTTACC
TATTGAAAGAATCCAGCAATTCTGTCTTTTAATGTCATGACACTATTCATAGACTCTGAT
TTTATTTATAAGCCACTAGCTGCATGACCCTCCAAGTAGATCTGTGGCTTGAAATAAAGA
AAATGCAGCAGAAAGAATGATATAGAAACATTTGGTGTGTTTTTTAATGTCAGTGGTTAA
AATTTGACCAACGGCTTGAAATAATGAGCCCCTCTTTTGCCATCATTTCCTGCCTCATTC
CCTATAAGATCTACCAAGAACCCAGATCCTGTCCATTGAAATCTTTTCTCACACATATTC
AAACTTTGATGGGCCAGTATTTGATTCTTGTACTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|871290|emb|CAA49512.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|871290|emb|CAA49512.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               480-599, - strand, RNAz p=0.630307

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-599, - strand, RNAz p=0.630307

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-909, gnl|bosTau2|chr14 (2178870-2177962)
               

               
               1-909, gnl|Hg17|chrX (100841001-100840093)
               

               
               1-909, gnl|Mm7|chr18 (53075148-53076056)
               


               
               919-1296, gnl|bosTau2|chr6 (51983983-51983604)
               

               
               919-1296, gnl|Hg17|chr4 (80684872-80684497)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-909, gnl|bosTau2|chr14 (2178870-2177962)
               

               
               1-909, gnl|Hg17|chrX (100841001-100840093)
               

               
               1-909, gnl|Mm7|chr18 (53075148-53076056)
               


               
               919-1296, gnl|bosTau2|chr6 (51983983-51983604)
               

               
               919-1296, gnl|Hg17|chr4 (80684872-80684497)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cki (0.826173)
               

               
               lun (0.451467)
               

               
               cje (0.165235)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)
               

               
               lun (0.451467)
               

               
               cje (0.165235)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	1-909, gnl\|bosTau2\|chr14 (2178870-2177962)
	1-909, gnl\|Hg17\|chrX (100841001-100840093)
	1-909, gnl\|Mm7\|chr18 (53075148-53076056)

	919-1296, gnl\|bosTau2\|chr6 (51983983-51983604)
	919-1296, gnl\|Hg17\|chr4 (80684872-80684497)

	cki (0.826173)
	lun (0.451467)
	cje (0.165235)
	che (0.136314)
	ova (0.129132)
	tra (0.123092)
	eje (0.0988338)