Ss1.1-Pig4-TMW8031L09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATTTTGAAAAGCTGCGGCTGTCATTACAGGACCAGGTGGACACACTGACCTTCCAGAG CCAGTCTCTGCGGGACCGAGCCAGACGCTTTGAGGAGGCCTTGAGGAGGAACACTGAAGA GCAGCTGGAGATCGCGCTGGCTCCTTATCAGCACTTGGAAGAAGACATGAAGAGCCTGAG GCAGGTATTAGAAATGAAGAATCAGCAAATTCACCAGCAGGAAAAGAAGATTATGGAGCT GGAAAAGCTGGCAGAGAAGAACATTATCCTGGAAGAAAAGATCCAGGTTCTCCAGCAGCA GAATGAAGACCTCAAAGCCAGGATCGACCAGAACACCGTTGTCACGAGACAGCTGTCGGA GGAAAACGCTAATCTGCAGGAATACGTGGAGAAAGAAACGCAGGAGAAGAAGAGATTGAG CCGAACCAACGAAGAGCTGCTTTGGAAGCTCCAAACCGGGGACCCGACCAGCCCGGTTAA ACTGTCCCCCACGTCCCCTATTTACCGCGGCTCCTCCTCCGGGCCCTCCTCTCCCGCCAG AGTCAGCATGACGCCAAGATGACGCCACCACGCTGCGGGCGCAGCCCCGGCACCCGGTCC ACGAGGGCTCCCACTTGCGGGGAGCAGGGACCACGGGCCGGCGGGGCTGGCCCCGCGCGC GTGCGCAGTAGCTGCAGAGCTGCATCCTCTGCGCGCATGCCCCGTAGCTGCACAGCCGCA TCCTAGGCAGAGCCCTCTTCTGACCCTCGTGTAAGACTGTCCTGGTGTTGGCACTTAGGA AAGTGTAAACGGTAGCGTCTGGCGTGCAAATGTTTGGCAGTAGTTAGAGCCAAAAGAAAG GAACACCCATTGTTCTTGAGCGATGAACTTTCACTGCAGAATTTCAGGTTAGTTACAAAG AGCTCAGTTTTGAATATCCATTGACTAATCATCCTGTACCGCACCGATCTGTGTGTACAT TTAGATACACGTATATACACATGCAGCAGTTCTGAATCGCATTTTTTATAACATGAAGTG CTGACATATTTTGGTGAAGGTCAGCAGTTTTCTAACTTGTGCCTAAGAATTATTGGGAAA CGAAAATGCATTTCTATCTAGCTTCCCAGGAATATTTCTACCCAAAATAGTAAAAGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATTTTGAAAAGCTGCGGCTGTCATTACAGGACCAGGTGGACACACTGACCTTCCAGAG CCAGTCTCTGCGGGACCGAGCCAGACGCTTTGAGGAGGCCTTGAGGAGGAACACTGAAGA GCAGCTGGAGATCGCGCTGGCTCCTTATCAGCACTTGGAAGAAGACATGAAGAGCCTGAG GCAGGTATTAGAAATGAAGAATCAGCAAATTCACCAGCAGGAAAAGAAGATTATGGAGCT GGAAAAGCTGGCAGAGAAGAACATTATCCTGGAAGAAAAGATCCAGGTTCTCCAGCAGCA GAATGAAGACCTCAAAGCCAGGATCGACCAGAACACCGTTGTCACGAGACAGCTGTCGGA GGAAAACGCTAATCTGCAGGAATACGTGGAGAAAGAAACGCAGGAGAAGAAGAGATTGAG CCGAACCAACGAAGAGCTGCTTTGGAAGCTCCAAACCGGGGACCCGACCAGCCCGGTTAA ACTGTCCCCCACGTCCCCTATTTACCGCGGCTCCTCCTCCGGGCCCTCCTCTCCCGCCAG AGTCAGCATGACGCCAAGATGACGCCACCACGCTGCGGGCGCAGCCCCGGCACCCGGTCC ACGAGGGCTCCCACTTGCGGGGAGCAGGGACCACGGGCCGGCGGGGCTGGCCCCGCGCGC GTGCGCAGTAGCTGCAGAGCTGCATCCTCTGCGCGCATGCCCCGTAGCTGCACAGCCGCA TCCTAGGCAGAGCCCTCTTCTGACCCTCGTGTAAGACTGTCCTGGTGTTGGCACTTAGGA AAGTGTAAACGGTAGCGTCTGGCGTGCAAATGTTTGGCAGTAGTTAGAGCCAAAAGAAAG GAACACCCATTGTTCTTGAGCGATGAACTTTCACTGCAGAATTTCAGGTTAGTTACAAAG AGCTCAGTTTTGAATATCCATTGACTAATCATCCTGTACCGCACCGATCTGTGTGTACAT TTAGATACACGTATATACACATGCAGCAGTTCTGAATCGCATTTTTTATAACATGAAGTG CTGACATATTTTGGTGAAGGTCAGCAGTTTTCTAACTTGTGCCTAAGAATTATTGGGAAA CGAAAATGCATTTCTATCTAGCTTCCCAGGAATATTTCTACCCAAAATAGTAAAAGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 134-251, + strand, RNAz p=0.52773 | |
| 625-741, - strand, RNAz p=0.719384 | |
| 924-1140, - strand, RNAz p=0.872207 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 134-251, + strand, RNAz p=0.52773 | |
| 625-741, - strand, RNAz p=0.719384 | |
| 924-1140, - strand, RNAz p=0.872207 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 125-251, gnl|bosTau2|chr12 (15619872-15619746) | |
| 125-251, gnl|canFam2|chr25 (13364365-13364231) | |
| 125-251, gnl|danRer3|chrNA (182938202-182938335) | |
| 125-251, gnl|dasNov1|scaffold_61259 (6-140) | |
| 125-251, gnl|echTel1|scaffold_222609 (8513-8613) | |
| 125-251, gnl|fr1|chrUn (130759107-130758972) | |
| 125-251, gnl|galGal2|chr1 (167505933-167505804) | |
| 125-251, gnl|hg17|chr13 (28970548-28970682) | |
| 125-251, gnl|Hg17|chr13 (28970549-28970675) | |
| 125-251, gnl|loxAfr1|scaffold_6804 (27136-27002) | |
| 125-251, gnl|mm7|chr5 (147198185-147198319) | |
| 125-251, gnl|Mm7|chr5 (147198186-147198312) | |
| 125-251, gnl|monDom2|scaffold_15 (38881756-38881890) | |
| 125-251, gnl|oryCun1|scaffold_188944 (42424-42558) | |
| 125-251, gnl|panTro1|chr14 (28167370-28167504) | |
| 125-251, gnl|rheMac2|chr17 (9037372-9037506) | |
| 125-251, gnl|rn3|chr12 (7294408-7294275) | |
| 125-251, gnl|tetNig1|chr16 (5965307-5965184) | |
| 125-251, gnl|xenTro1|scaffold_978 (234558-234433) | |
| 347-1140, gnl|bosTau2|chr12 (15615591-15614792) | |
| 347-1140, gnl|Hg17|chr13 (28975128-28975880) | |
| 347-1140, gnl|Mm7|chr5 (147208013-147208794) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 125-251, gnl|bosTau2|chr12 (15619872-15619746) | |
| 125-251, gnl|canFam2|chr25 (13364365-13364231) | |
| 125-251, gnl|danRer3|chrNA (182938202-182938335) | |
| 125-251, gnl|dasNov1|scaffold_61259 (6-140) | |
| 125-251, gnl|echTel1|scaffold_222609 (8513-8613) | |
| 125-251, gnl|fr1|chrUn (130759107-130758972) | |
| 125-251, gnl|galGal2|chr1 (167505933-167505804) | |
| 125-251, gnl|hg17|chr13 (28970548-28970682) | |
| 125-251, gnl|Hg17|chr13 (28970549-28970675) | |
| 125-251, gnl|loxAfr1|scaffold_6804 (27136-27002) | |
| 125-251, gnl|mm7|chr5 (147198185-147198319) | |
| 125-251, gnl|Mm7|chr5 (147198186-147198312) | |
| 125-251, gnl|monDom2|scaffold_15 (38881756-38881890) | |
| 125-251, gnl|oryCun1|scaffold_188944 (42424-42558) | |
| 125-251, gnl|panTro1|chr14 (28167370-28167504) | |
| 125-251, gnl|rheMac2|chr17 (9037372-9037506) | |
| 125-251, gnl|rn3|chr12 (7294408-7294275) | |
| 125-251, gnl|tetNig1|chr16 (5965307-5965184) | |
| 125-251, gnl|xenTro1|scaffold_978 (234558-234433) | |
| 347-1140, gnl|bosTau2|chr12 (15615591-15614792) | |
| 347-1140, gnl|Hg17|chr13 (28975128-28975880) | |
| 347-1140, gnl|Mm7|chr5 (147208013-147208794) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.272628) | |
| nep (0.183925) | |
| hlv (0.139256) |