Ss1.1-Pig4-TMW8031L12.5
|
CTCGCGAGAGCAAGCGGCGTTCGCCCTTGGGCTCTAGGAGCAGGCGGCTGGTACAGTTCG
GGACCAGGGGTTCGCGGTCATGGCCAAGACGCTTCTTCACAAGTACTCGGATATCCCCGA
AGGCACCGAGTGCCACCGCAAGGCCTATGCCAGCACCAGTATCGGTGGTGCCACTGGCCT
GATTGTCTCTGCCTACAGTATTGCGCTCAAGCCCCCAGCCTCCTTCCTGGAGGGAGTGGC
AAGGACAGGACGGTACACATTTACCTCAGCTGCCATCGGCGCCATATTCGGCCTCACATC
CTGCATCAGCGCCCAGGTTCGCGAGAAGCCTGACGACCCTCTGAACTACTTCATTGGAGG
CTGCGCCGGAGGCTTGACCCTGGGAGCACGCACCCGCAGCTATGGGATCGGAGCCGCCGC
CTGCGCGTACATGGGCTTGACAGCTGCCCTAGTCAAGATGGGCCAGCTGGAGGGCTGGCA
GGTGTTCGCAGAGCCCAAGGTGTGAGCCCCGCCGCCTCCCGGGACCTCGGGCAGGTGCAA
GTTCATTGTAAAATAAATTCTGCGTGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCGCGAGAGCAAGCGGCGTTCGCCCTTGGGCTCTAGGAGCAGGCGGCTGGTACAGTTCG
GGACCAGGGGTTCGCGGTCATGGCCAAGACGCTTCTTCACAAGTACTCGGATATCCCCGA
AGGCACCGAGTGCCACCGCAAGGCCTATGCCAGCACCAGTATCGGTGGTGCCACTGGCCT
GATTGTCTCTGCCTACAGTATTGCGCTCAAGCCCCCAGCCTCCTTCCTGGAGGGAGTGGC
AAGGACAGGACGGTACACATTTACCTCAGCTGCCATCGGCGCCATATTCGGCCTCACATC
CTGCATCAGCGCCCAGGTTCGCGAGAAGCCTGACGACCCTCTGAACTACTTCATTGGAGG
CTGCGCCGGAGGCTTGACCCTGGGAGCACGCACCCGCAGCTATGGGATCGGAGCCGCCGC
CTGCGCGTACATGGGCTTGACAGCTGCCCTAGTCAAGATGGGCCAGCTGGAGGGCTGGCA
GGTGTTCGCAGAGCCCAAGGTGTGAGCCCCGCCGCCTCCCGGGACCTCGGGCAGGTGCAA
GTTCATTGTAAAATAAATTCTGCGTGTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|27374817|emb|CAD52867.1| |
Protein identifier
|
gi|27374817|emb|CAD52867.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-177, gnl|bosTau2|chr7 (13203727-13203902) |
|
1-177, gnl|Hg17|chr19 (5854797-5854622) |
|
1-177, gnl|Mm7|chr17 (54928919-54929100) |
| |
|
264-392, gnl|bosTau2|chr7 (13207164-13207292) |
|
264-392, gnl|canFam2|chr20 (57132140-57131989) |
|
264-392, gnl|echTel1|scaffold_296321 (4631-4758) |
|
264-392, gnl|hg17|chr19 (5847457-5847606) |
|
264-392, gnl|Hg17|chr19 (5847592-5847464) |
|
264-392, gnl|loxAfr1|scaffold_6309 (46566-46671) |
|
264-392, gnl|mm7|chr17 (54932607-54932464) |
|
264-392, gnl|Mm7|chr17 (54932469-54932598) |
|
264-392, gnl|panTro1|chr20_random (27816711-27816860) |
|
264-392, gnl|rheMac2|chr19 (5798849-5799009) |
|
264-392, gnl|rn3|chrUn (25058058-25058201) |
|
264-392, gnl|tetNig1|chrUn_random (49711531-49711676) |
| |
|
393-571, gnl|bosTau2|chr7 (13208563-13208747) |
|
393-571, gnl|Hg17|chr19 (5845865-5845689) |
|
393-571, gnl|Mm7|chr17 (54933142-54933291) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-177, gnl|bosTau2|chr7 (13203727-13203902) |
|
1-177, gnl|Hg17|chr19 (5854797-5854622) |
|
1-177, gnl|Mm7|chr17 (54928919-54929100) |
| |
|
264-392, gnl|bosTau2|chr7 (13207164-13207292) |
|
264-392, gnl|canFam2|chr20 (57132140-57131989) |
|
264-392, gnl|echTel1|scaffold_296321 (4631-4758) |
|
264-392, gnl|hg17|chr19 (5847457-5847606) |
|
264-392, gnl|Hg17|chr19 (5847592-5847464) |
|
264-392, gnl|loxAfr1|scaffold_6309 (46566-46671) |
|
264-392, gnl|mm7|chr17 (54932607-54932464) |
|
264-392, gnl|Mm7|chr17 (54932469-54932598) |
|
264-392, gnl|panTro1|chr20_random (27816711-27816860) |
|
264-392, gnl|rheMac2|chr19 (5798849-5799009) |
|
264-392, gnl|rn3|chrUn (25058058-25058201) |
|
264-392, gnl|tetNig1|chrUn_random (49711531-49711676) |
| |
|
393-571, gnl|bosTau2|chr7 (13208563-13208747) |
|
393-571, gnl|Hg17|chr19 (5845865-5845689) |
|
393-571, gnl|Mm7|chr17 (54933142-54933291) |
|
hlv (0.696282) |
|
nms (0.641574) |
|
ton (0.526501) |
|
hea (0.408998) |
|
pla (0.401016) |
|
col (0.390016) |
|
ill (0.351185) |
|
duo (0.345602) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
csp (0.322373) |
|
nbm (0.297974) |
|
cga (0.279096) |
|
cov (0.264306) |
|
ese (0.253004) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
jca (0.22792) |
|
mas (0.210305) |
|
jej (0.197844) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
eep (0.122564) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
hlv (0.696282) |
|
nms (0.641574) |
|
ton (0.526501) |
|
hea (0.408998) |
|
pla (0.401016) |
|
col (0.390016) |
|
ill (0.351185) |
|
duo (0.345602) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
csp (0.322373) |
|
nbm (0.297974) |
|
cga (0.279096) |
|
cov (0.264306) |
|
ese (0.253004) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
ece (0.229305) |
|
jca (0.22792) |
|
mas (0.210305) |
|
jej (0.197844) |
|
eje (0.197668) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
fbs (0.175346) |
|
eye (0.170503) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
eep (0.122564) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
spc (0.113366) |
