Non-Coding RNA Search

Ss1.1-Pig4-TMW8031L21.3

Sequence:


               
               TTATGAAAACTGCTTCTTCCTATACTTTAAAAATCCTATGACTGAAGGGAAAAGAGCGAG
AATGCTCTTCCATGGAATTTTAAGGGATTCTAAGAGAGAGAGAGAAAGTACAGTGGATTG
GGAATCTGGAGTTTTCGTTGTAGCGGCTTGGGTTGCTGCCCTGGCACGGGTTAGACCCCT
GGTCTGGGAACTTCCACATGCTGTGGGTATGGCCGAAAAAAAAAATGTGCTATTTTACAT
TTCAAACACCAATATATTTAATTTTGCACTCTTTGTATTTTTCATAAACATTCCCTCCTA
GCCTGTCCAAGAACTTGGATGGGTAACTGCAGACTAAGTTAATTAAATATGTAATTTTAA
AGTGAGAAACTAAATATGGTTCCTCATGGGTTACTTTATCATGTTTCATTGATGATATTA
CCTGAGAAACCTTTTGTTTGCTGTTAGCGCCCTGTATAATTTAAGATTGCAATTATATTT
TATGTAAATATTTTGCAAAGGATTAAGCATTTGCAAGTACATAGGCATTTATTTCCATAA
AGCATTTGTCTGTGTCCACAAATACTACTATGTTACTAGAAACTATTTTAATTTTCCTGA
GCAAATGTATCTAATCCAAATTTAGCATAGACATAAATTTTTTTAATAACTGTGGCATAC
ATGTAAAACATATCTAATCCTAGTATTGAGAACTTTCCCTTCTGTGTTTTAAGTTCAAAA
AGGTAAATTTCTCCATTGTACAAATGCTTTGTTGTGAGAGGACATCTCACAGTTACAATG
GCTTTTAAAGGATCATTTTTCTTTTGGGGAAAAAAAAAAGCTGGGAAGGTTAATTCCATA
CTTGGCTGAAATTACTAAATGTACAAATACCTCAACCTCAATTTCATCACCATACAGAGA
AATAAAACTATTTTGATTGAAAAGTTCCTTAGTAGGAATATCCACCTCATCTAAATACTC
TATTTTTATACATATTTTTATATGAAAGTAAACATGAATTTATATTTAATGGTCTTAAAT
TATATCTAAGCACAAATATCACTTGATATAAACAATACATATCTGTATCTGACATGGTAA
ATTTTTTAAAAGAATGGTACAGAATTAACTTTTTAAATAAATGACTTTTCTAATATCTTC
AGCGATATGCAAGCATCATTCTTGGGTGTTCAGTGATTATTTAATGATAAAAAACATTGC
TTCTCCAATTCATATAGCTTCTCCATCATGTTTTAATGTATTACATACTCTGTAACAGAA
TTTCAGTCAGTGGATGTTTCTTATGGTTTCCTGTCAACCGAACTGCAGTGCCTTTCTGAC
TGAGGCTAGCCTGGCATTTACTTCTTCGCCATTGAAATAATAATGGATTTTAGAAACAAT
TGTAGTAATGCTATTAATAAATGTCTTACTAGTAATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGAAAACTGCTTCTTCCTATACTTTAAAAATCCTATGACTGAAGGGAAAAGAGCGAG
AATGCTCTTCCATGGAATTTTAAGGGATTCTAAGAGAGAGAGAGAAAGTACAGTGGATTG
GGAATCTGGAGTTTTCGTTGTAGCGGCTTGGGTTGCTGCCCTGGCACGGGTTAGACCCCT
GGTCTGGGAACTTCCACATGCTGTGGGTATGGCCGAAAAAAAAAATGTGCTATTTTACAT
TTCAAACACCAATATATTTAATTTTGCACTCTTTGTATTTTTCATAAACATTCCCTCCTA
GCCTGTCCAAGAACTTGGATGGGTAACTGCAGACTAAGTTAATTAAATATGTAATTTTAA
AGTGAGAAACTAAATATGGTTCCTCATGGGTTACTTTATCATGTTTCATTGATGATATTA
CCTGAGAAACCTTTTGTTTGCTGTTAGCGCCCTGTATAATTTAAGATTGCAATTATATTT
TATGTAAATATTTTGCAAAGGATTAAGCATTTGCAAGTACATAGGCATTTATTTCCATAA
AGCATTTGTCTGTGTCCACAAATACTACTATGTTACTAGAAACTATTTTAATTTTCCTGA
GCAAATGTATCTAATCCAAATTTAGCATAGACATAAATTTTTTTAATAACTGTGGCATAC
ATGTAAAACATATCTAATCCTAGTATTGAGAACTTTCCCTTCTGTGTTTTAAGTTCAAAA
AGGTAAATTTCTCCATTGTACAAATGCTTTGTTGTGAGAGGACATCTCACAGTTACAATG
GCTTTTAAAGGATCATTTTTCTTTTGGGGAAAAAAAAAAGCTGGGAAGGTTAATTCCATA
CTTGGCTGAAATTACTAAATGTACAAATACCTCAACCTCAATTTCATCACCATACAGAGA
AATAAAACTATTTTGATTGAAAAGTTCCTTAGTAGGAATATCCACCTCATCTAAATACTC
TATTTTTATACATATTTTTATATGAAAGTAAACATGAATTTATATTTAATGGTCTTAAAT
TATATCTAAGCACAAATATCACTTGATATAAACAATACATATCTGTATCTGACATGGTAA
ATTTTTTAAAAGAATGGTACAGAATTAACTTTTTAAATAAATGACTTTTCTAATATCTTC
AGCGATATGCAAGCATCATTCTTGGGTGTTCAGTGATTATTTAATGATAAAAAACATTGC
TTCTCCAATTCATATAGCTTCTCCATCATGTTTTAATGTATTACATACTCTGTAACAGAA
TTTCAGTCAGTGGATGTTTCTTATGGTTTCCTGTCAACCGAACTGCAGTGCCTTTCTGAC
TGAGGCTAGCCTGGCATTTACTTCTTCGCCATTGAAATAATAATGGATTTTAGAAACAAT
TGTAGTAATGCTATTAATAAATGTCTTACTAGTAATAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               208-1418, gnl|bosTau2|chr29 (35843596-35844812)
               

               
               208-1418, gnl|Hg17|chr7 (120530255-120531450)
               

               
               208-1418, gnl|Mm7|chr6 (22191392-22192517)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-1418, gnl|bosTau2|chr29 (35843596-35844812)
               

               
               208-1418, gnl|Hg17|chr7 (120530255-120531450)
               

               
               208-1418, gnl|Mm7|chr6 (22191392-22192517)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               gul (1.06553)
               

               
               ret (0.514933)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (1.06553)
               

               
               ret (0.514933)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	208-1418, gnl\|bosTau2\|chr29 (35843596-35844812)
	208-1418, gnl\|Hg17\|chr7 (120530255-120531450)
	208-1418, gnl\|Mm7\|chr6 (22191392-22192517)

	gul (1.06553)
	ret (0.514933)
	aor (0.390549)
	elu (0.385356)
	sug (0.381874)
	tra (0.369276)
	isp (0.300752)
	ski (0.29347)
	nlu (0.191681)
	fhi (0.169578)
	fat (0.147427)
	liv (0.146284)
	spl (0.143184)
	kid (0.129735)
	bla (0.124347)
	spc (0.113366)