Non-Coding RNA Search

Ss1.1-Pig4-TMW8031M03.3

Sequence:


               
               GTTCATAATTCTAAATATCTGCCATGAACATTAAAAAACAAACCAGTATTGATGTAGGAT
TCATCAAACAGTGTTCTGGACTTTTGAACCGTCACAGTGAATCAGGGACATTTCTTGATC
ACGTTAACAGTGTGATCAGAGAGTGCTGATGACAGGCTATGGGAGGTCTGCCTGCAAGGG
AGACGGGGAAATGAATTTCTTCCCAGTGGAGAACCGTTCTTATCTCTTCCCCCACTCACC
TGGGATGCTGCTCCCAGACTGGACGGGGTGCCCTCTCCTCCTATTACCTCTTGGCTTCTC
TGAAGTGTAGGAATATCTTCCTAGTGTTGAATTTGGCAGTTCCTCAGTGTTCACAGCATC
ATAGAAAAGATGTTTTTGCCTTATCTCCTTATATATAAAATAGAACTTGAAAAGAATTGT
GCATTTATGTTTTCATACATCGTCTTTCATAAATCATCTTCATAGTTTCAAATGTGCTTC
TGTGGACAGGAGGGAGAAAGTCCTCTACGTTTTTAAAGGTAGCAAATGTGATGTATGACC
CTGCCAGTACTCCCCAAAATGGCTAGGTTGTCGTGGGGACCCACGGTCACCTGTGACACT
GACAGTGTTCATGAAAGTCTAGCTGACTTGCTGATGAAAAAAATGTGGGGCTGTGTCTGA
AGACAGCCATGGGCTGGATCTGCAAGTGTGAGCAGAGGCAGAACTCTGGAAAACTGGATG
GGAGTGGTGGTGCACCTAGAAAGGGAACATCTGGCCCTAGACCTGCCTGGTGGTAACCAC
TAGAGAAACTTTACTTTTTATCCTTTTGTGATGCCTGTGAATTTTAATGGAGCATTAGAC
CAACATACTCAGGGGGTTTTTCTTTAGCTATCCCTCAGATATTTTAGATATGTCAGTAGG
AAGGGGAAGGTTTCATTTTCGTTTGAAAAACTAAAACAAGACCATCTTGTAAACAAACTG
TCACCAAAAGCCTTCTCCTTGTAGTTGCACGTGCATGTTGAATTTCAGAAAACGTGCATT
CGCAAGAGGGGGGGCAGAATGTGTTCTGTTGTTGAAACACTTCTTACCATTTTCTCGTGT
TCATATTATATTTTAAGATGTTTGAAAAGTTAAACTGTATAAGCCGCTTAATTAAAGTAA
AACCAAAATATTCATGATGCTTTTCATACACTGTGGCATAAGATATAAAGTTTGTAATAT
TTTGCAAATTTCTGTGCATTTTAATATTTTATAATTATGAGCATTTTAATAAATTCATTT
TTAAAGACAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCATAATTCTAAATATCTGCCATGAACATTAAAAAACAAACCAGTATTGATGTAGGAT
TCATCAAACAGTGTTCTGGACTTTTGAACCGTCACAGTGAATCAGGGACATTTCTTGATC
ACGTTAACAGTGTGATCAGAGAGTGCTGATGACAGGCTATGGGAGGTCTGCCTGCAAGGG
AGACGGGGAAATGAATTTCTTCCCAGTGGAGAACCGTTCTTATCTCTTCCCCCACTCACC
TGGGATGCTGCTCCCAGACTGGACGGGGTGCCCTCTCCTCCTATTACCTCTTGGCTTCTC
TGAAGTGTAGGAATATCTTCCTAGTGTTGAATTTGGCAGTTCCTCAGTGTTCACAGCATC
ATAGAAAAGATGTTTTTGCCTTATCTCCTTATATATAAAATAGAACTTGAAAAGAATTGT
GCATTTATGTTTTCATACATCGTCTTTCATAAATCATCTTCATAGTTTCAAATGTGCTTC
TGTGGACAGGAGGGAGAAAGTCCTCTACGTTTTTAAAGGTAGCAAATGTGATGTATGACC
CTGCCAGTACTCCCCAAAATGGCTAGGTTGTCGTGGGGACCCACGGTCACCTGTGACACT
GACAGTGTTCATGAAAGTCTAGCTGACTTGCTGATGAAAAAAATGTGGGGCTGTGTCTGA
AGACAGCCATGGGCTGGATCTGCAAGTGTGAGCAGAGGCAGAACTCTGGAAAACTGGATG
GGAGTGGTGGTGCACCTAGAAAGGGAACATCTGGCCCTAGACCTGCCTGGTGGTAACCAC
TAGAGAAACTTTACTTTTTATCCTTTTGTGATGCCTGTGAATTTTAATGGAGCATTAGAC
CAACATACTCAGGGGGTTTTTCTTTAGCTATCCCTCAGATATTTTAGATATGTCAGTAGG
AAGGGGAAGGTTTCATTTTCGTTTGAAAAACTAAAACAAGACCATCTTGTAAACAAACTG
TCACCAAAAGCCTTCTCCTTGTAGTTGCACGTGCATGTTGAATTTCAGAAAACGTGCATT
CGCAAGAGGGGGGGCAGAATGTGTTCTGTTGTTGAAACACTTCTTACCATTTTCTCGTGT
TCATATTATATTTTAAGATGTTTGAAAAGTTAAACTGTATAAGCCGCTTAATTAAAGTAA
AACCAAAATATTCATGATGCTTTTCATACACTGTGGCATAAGATATAAAGTTTGTAATAT
TTTGCAAATTTCTGTGCATTTTAATATTTTATAATTATGAGCATTTTAATAAATTCATTT
TTAAAGACAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-1270, gnl|bosTau2|chr14 (33663295-33664563)
               

               
               3-1270, gnl|Hg17|chr12 (44111064-44112399)
               

               
               3-1270, gnl|Mm7|chr15 (95975332-95976543)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1270, gnl|bosTau2|chr14 (33663295-33664563)
               

               
               3-1270, gnl|Hg17|chr12 (44111064-44112399)
               

               
               3-1270, gnl|Mm7|chr15 (95975332-95976543)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               tra (0.246184)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               tra (0.246184)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	3-1270, gnl\|bosTau2\|chr14 (33663295-33664563)
	3-1270, gnl\|Hg17\|chr12 (44111064-44112399)
	3-1270, gnl\|Mm7\|chr15 (95975332-95976543)

	sin (0.349895)
	sme (0.305437)
	jej (0.296765)
	tra (0.246184)
	eje (0.197668)
	aor (0.195274)
	ldo (0.194005)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	cki (0.165235)
	csp (0.161186)
	tbr (0.154178)
	spl (0.143184)
	csk (0.140746)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	clu (0.119646)
	jca (0.11396)