Non-Coding RNA Search

Ss1.1-Pig4-TMW8031M04.3

Sequence:


               
               TATTAATGTGATGAATGAATTGATCATTCCCTGCATTCACCTTATCATTAATAATGACAT
CTCCAAGGATGACCTGGATGCCATTGAGATCATGAGAAACCATTGGTGCTCTTACCTTGG
GCAAGATATTGCAGAAAATCTGCAACTGTGCTTGGGGGAGTTTCTACCCAGGCTTCTAGA
TCCTTCTGCAGAAATCATTGTCTTGAAGGAGCCTCCAACTATTCGACCCAATTCTCCCTA
TGACCTTTGCAGCCGATTTGCAGCTGTCATGGAGTCAATTCAAGGAGTGTCAACTGTGAC
AGTGAAATAAGCCCCCATGTGTTCAAGGCCCATCCTGGCCTTTGGCTGACTGCCTGTTGC
ACAGAAGTCTGTTGTCACAGTGTTTACCTTGGGCAAGGAATTAGGTAGAAAAGTAAGATT
CAGATCCAGACCCCAACCATGCCGTGTGTGTAAAGAAGGATTGAAAATAAAAATGCACTT
TTTAGGTACAGAATCATAAAAGCAATTTCACTTAAAAAAGGCAGGAGGCAGTGTATCAAG
GTATTGATTTATGCCAGAAGACCTGAGATGCCTCTTGTACCTATGAGACTGCTCGGGCTT
TTCTAAGCCTTTCCCACTTTTAAAATGATCCTTCAGGCATAATATTTTTGACAGCAGAAT
AGAAGGGTGAGTCATCAGAACGTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATA
TAGATGGCGTTAAAAAGTTCTTAACTGCAAGAGGCCAGACGTATAAACCTTGCCTGGCTC
TTGACAGGAGATGACAGTGGGCTGATGAGCCCCTGCCATTTCACTTGTGGGTGGAGCATG
AGGTCATGTGGCAGTGTGATGCCCAAAAGGCAAAAGAAAACTGCCTCTCCTTTCTTTCTT
CTCTCTCCTTCATTTTATATTTTTAAACAAACCGGAAAACCTCACACTCGGTCCTAAGTG
AAAGAAAGGAAAGCGTTAAGGATTTTAGATGGGAGTAGCAGCATTGCGAAACTTGACTAA
AGAGATCATAGTTGTTAACCATTTAGGTAAATTTTTCTAGTGTCTGAAAATTGTCAGAAA
CACACAGCTAAGGCTGCTGCTGGCCCAGAAGAACATTTTGATACCCCTCCCCTTTTTTGC
TTTAAAAAATAAGGGATGTGGGTTTGTGTAAAAAAAAAAAAAAGAAAAAAAAAGGAAAAA
AAACCTATATATATGTATATGTAGAGAGAGAAATATCCCCTGTTGACAATTTTTAAAGGC
TCTAGATGGGGTATGGTGTTTTAACCAAATTTTAAGATTAATGAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTAATGTGATGAATGAATTGATCATTCCCTGCATTCACCTTATCATTAATAATGACAT
CTCCAAGGATGACCTGGATGCCATTGAGATCATGAGAAACCATTGGTGCTCTTACCTTGG
GCAAGATATTGCAGAAAATCTGCAACTGTGCTTGGGGGAGTTTCTACCCAGGCTTCTAGA
TCCTTCTGCAGAAATCATTGTCTTGAAGGAGCCTCCAACTATTCGACCCAATTCTCCCTA
TGACCTTTGCAGCCGATTTGCAGCTGTCATGGAGTCAATTCAAGGAGTGTCAACTGTGAC
AGTGAAATAAGCCCCCATGTGTTCAAGGCCCATCCTGGCCTTTGGCTGACTGCCTGTTGC
ACAGAAGTCTGTTGTCACAGTGTTTACCTTGGGCAAGGAATTAGGTAGAAAAGTAAGATT
CAGATCCAGACCCCAACCATGCCGTGTGTGTAAAGAAGGATTGAAAATAAAAATGCACTT
TTTAGGTACAGAATCATAAAAGCAATTTCACTTAAAAAAGGCAGGAGGCAGTGTATCAAG
GTATTGATTTATGCCAGAAGACCTGAGATGCCTCTTGTACCTATGAGACTGCTCGGGCTT
TTCTAAGCCTTTCCCACTTTTAAAATGATCCTTCAGGCATAATATTTTTGACAGCAGAAT
AGAAGGGTGAGTCATCAGAACGTGAACCAGATGAACAGCTACTAGTTATTTTATCAAATA
TAGATGGCGTTAAAAAGTTCTTAACTGCAAGAGGCCAGACGTATAAACCTTGCCTGGCTC
TTGACAGGAGATGACAGTGGGCTGATGAGCCCCTGCCATTTCACTTGTGGGTGGAGCATG
AGGTCATGTGGCAGTGTGATGCCCAAAAGGCAAAAGAAAACTGCCTCTCCTTTCTTTCTT
CTCTCTCCTTCATTTTATATTTTTAAACAAACCGGAAAACCTCACACTCGGTCCTAAGTG
AAAGAAAGGAAAGCGTTAAGGATTTTAGATGGGAGTAGCAGCATTGCGAAACTTGACTAA
AGAGATCATAGTTGTTAACCATTTAGGTAAATTTTTCTAGTGTCTGAAAATTGTCAGAAA
CACACAGCTAAGGCTGCTGCTGGCCCAGAAGAACATTTTGATACCCCTCCCCTTTTTTGC
TTTAAAAAATAAGGGATGTGGGTTTGTGTAAAAAAAAAAAAAAGAAAAAAAAAGGAAAAA
AAACCTATATATATGTATATGTAGAGAGAGAAATATCCCCTGTTGACAATTTTTAAAGGC
TCTAGATGGGGTATGGTGTTTTAACCAAATTTTAAGATTAATGAGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-134, - strand, RNAz p=0.851802

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-134, - strand, RNAz p=0.851802

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-134, gnl|bosTau2|chr15 (10751208-10751075)
               

               
               1-134, gnl|Hg17|chr11 (113177548-113177415)
               

               
               1-134, gnl|Mm7|chr9 (49011165-49011298)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr15 (10751208-10751075)
               

               
               1-134, gnl|Hg17|chr11 (113177548-113177415)
               

               
               1-134, gnl|Mm7|chr9 (49011165-49011298)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               bfe (0.449573)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               tbr (0.308356)
               

               
               kid (0.259471)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-134, gnl\|bosTau2\|chr15 (10751208-10751075)
	1-134, gnl\|Hg17\|chr11 (113177548-113177415)
	1-134, gnl\|Mm7\|chr9 (49011165-49011298)

	bfe (0.449573)
	tbr (0.308356)
	kid (0.259471)
	ese (0.253004)
	hea (0.204499)
	nlu (0.191681)
	sto (0.179824)
	cki (0.165235)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	ssp (0.13552)
	sug (0.127291)
	eep (0.122564)
	cbl (0.114797)
	jej (0.0989218)
	ldo (0.0970026)