Ss1.1-Pig4-TMW8031M06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCATCTGTCTGGGTAATCCACCGGAGACATTCACCTGGGAATATCGAGACAAAGACAAAA ACTATCAGAAGATTGGCCCCATAACACCCTTGAAGTTTTACAGGGATCATGTCAAGCCAC TCTTCAACATGGAAGATAAGATTTGTATTGTGAATGACCCCCGTCCCCAGCACAAGTTCA ACAGACTTTACACAGTGGACTACTTAAGCAATATGGTTGGAGGGAGAAAAACTCTCTATA ACAACCAGCCCATCGACTTCTTGAAAAAGATGGTTGCTGCCTCCATCAAAGATGGCGAGG CGGTATGGTTTGGCTGTGATGTTGGAAAACACTTCAATGGCAAGCTGGGCCTCAGTGACA TGAACGTCTATGACCATGAGTTAGTGTTTGGTGTCTCCATGAAGAACATGAATAAAGCCG AGAGGTTGACTTTTGGCGAATCTCTTATGACTCACGCCATGGCCTTCACTGCCGTCTCAG AGAAGGATGATCAGGAAGGTGCTTTCACGAAGTGGAGAGTGGAAAATTCGTGGGGTGAAG ACCATGGCCACAAAGGTTACCTGTGCATGACAGATGAGTGGTTCTCTGAATATGTCTACG AAGTGGTGGTGGACAAGAAGCATGTCCCCGAAGAGGTGCTAGCTGTACTAGAGCAGGAAC CCATTGTCCTGCCAGCCTGGGACCCCATGGGCGCTTTGGCCGAGTGATATTGCCTCCAGC TTTTCCGCCTCCCATGGGACCTGAAGTAGCTACAAAGGACAGATCCAGGGACTGAAGCCA AAGTTACACAGGTGACTGTGTGTTCCCACAGGACACAGTCAGACTCTTGGATTTCTCCTC CAGGAACCTCTTTGGGGAAGTGTGCTTTATGCGGAAACAAAATACTCTTTAAGAAAAAAA GGGAAAGATCAGGTCATACCGTCTACTCTCCTCATCTCCAACAGCTCAGGATCTCTTAGC GTTTCAATCAGATGGCATTGTTTGTCTTAACTCTGTCCGAAAGGTTTGGTTCAGTGTCTG TTTTCATAAGGCGGGAGAGGATGAGCAATTGAGGTGTGTGGAGAGAAAGTGGACCTAGTG TTCCTTGTTCCTAGAGTAGAATAGGGGGAGGGTGCCCTAATCTTGAGCTCTCGAAACTGC ATGCTGCCTGACAGTACCACTGTCCCTCCTAGATGGCAGTCTCTGAGGTCAGTGTTTTCA AGGTAATTTTTTGCGCCTCTTGATAGCCCAGGAGTGGGAGGTTGATCGAAACTGACATGA TTCCTTCCTGTTGTTCTGAACTGTGGGGAACACAGCTTTACTCGATGCAGGGTTAGGGAG AGGCTTAGAGAAAGTGGGTGAGAGAACAACCAAAACCTTATCATGATCTGCATCATAATC ATTAGGGGGAGCTCTCACCAAACAGTTTAACTTCTCCCTCTGGAATTGGGAGTTGGGTGG GCATGAAAAGGAGATATCCGTTCTTTCTGACAACTAGATGGTGCTGAGAAGCTTTTGAAT AAAACACTTTGCTAAATGAGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCATCTGTCTGGGTAATCCACCGGAGACATTCACCTGGGAATATCGAGACAAAGACAAAA ACTATCAGAAGATTGGCCCCATAACACCCTTGAAGTTTTACAGGGATCATGTCAAGCCAC TCTTCAACATGGAAGATAAGATTTGTATTGTGAATGACCCCCGTCCCCAGCACAAGTTCA ACAGACTTTACACAGTGGACTACTTAAGCAATATGGTTGGAGGGAGAAAAACTCTCTATA ACAACCAGCCCATCGACTTCTTGAAAAAGATGGTTGCTGCCTCCATCAAAGATGGCGAGG CGGTATGGTTTGGCTGTGATGTTGGAAAACACTTCAATGGCAAGCTGGGCCTCAGTGACA TGAACGTCTATGACCATGAGTTAGTGTTTGGTGTCTCCATGAAGAACATGAATAAAGCCG AGAGGTTGACTTTTGGCGAATCTCTTATGACTCACGCCATGGCCTTCACTGCCGTCTCAG AGAAGGATGATCAGGAAGGTGCTTTCACGAAGTGGAGAGTGGAAAATTCGTGGGGTGAAG ACCATGGCCACAAAGGTTACCTGTGCATGACAGATGAGTGGTTCTCTGAATATGTCTACG AAGTGGTGGTGGACAAGAAGCATGTCCCCGAAGAGGTGCTAGCTGTACTAGAGCAGGAAC CCATTGTCCTGCCAGCCTGGGACCCCATGGGCGCTTTGGCCGAGTGATATTGCCTCCAGC TTTTCCGCCTCCCATGGGACCTGAAGTAGCTACAAAGGACAGATCCAGGGACTGAAGCCA AAGTTACACAGGTGACTGTGTGTTCCCACAGGACACAGTCAGACTCTTGGATTTCTCCTC CAGGAACCTCTTTGGGGAAGTGTGCTTTATGCGGAAACAAAATACTCTTTAAGAAAAAAA GGGAAAGATCAGGTCATACCGTCTACTCTCCTCATCTCCAACAGCTCAGGATCTCTTAGC GTTTCAATCAGATGGCATTGTTTGTCTTAACTCTGTCCGAAAGGTTTGGTTCAGTGTCTG TTTTCATAAGGCGGGAGAGGATGAGCAATTGAGGTGTGTGGAGAGAAAGTGGACCTAGTG TTCCTTGTTCCTAGAGTAGAATAGGGGGAGGGTGCCCTAATCTTGAGCTCTCGAAACTGC ATGCTGCCTGACAGTACCACTGTCCCTCCTAGATGGCAGTCTCTGAGGTCAGTGTTTTCA AGGTAATTTTTTGCGCCTCTTGATAGCCCAGGAGTGGGAGGTTGATCGAAACTGACATGA TTCCTTCCTGTTGTTCTGAACTGTGGGGAACACAGCTTTACTCGATGCAGGGTTAGGGAG AGGCTTAGAGAAAGTGGGTGAGAGAACAACCAAAACCTTATCATGATCTGCATCATAATC ATTAGGGGGAGCTCTCACCAAACAGTTTAACTTCTCCCTCTGGAATTGGGAGTTGGGTGG GCATGAAAAGGAGATATCCGTTCTTTCTGACAACTAGATGGTGCTGAGAAGCTTTTGAAT AAAACACTTTGCTAAATGAGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 199-1333, - strand, RNAz p=0.921592 | |
| 264-364, - strand, RNAz p=0.970146 | |
| 363-482, - strand, RNAz p=0.640832 | |
| 787-900, - strand, RNAz p=0.585091 | |
| 1214-1329, + strand, RNAz p=0.895857 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 199-1333, - strand, RNAz p=0.921592 | |
| 264-364, - strand, RNAz p=0.970146 | |
| 363-482, - strand, RNAz p=0.640832 | |
| 787-900, - strand, RNAz p=0.585091 | |
| 1214-1329, + strand, RNAz p=0.895857 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_000386, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-1536, gnl|bosTau2|chr6 (64844189-64845699) | |
| 1-1536, gnl|Hg17|chr17 (25625325-25599344) | |
| 1-1536, gnl|Mm7|chr11 (77047406-77068948) | |
| 139-311, gnl|bosTau2|chr19 (15790558-15790385) | |
| 139-311, gnl|Hg17|chr17 (25624045-25623872) | |
| 139-311, gnl|Mm7|chr11 (77048305-77048485) | |
| 363-490, gnl|bosTau2|chr19 (15788574-15788446) | |
| 363-490, gnl|canFam2|chr9 (47617605-47617748) | |
| 363-490, gnl|danRer3|chr15 (34893842-34893988) | |
| 363-490, gnl|dasNov1|scaffold_97610 (4915-4772) | |
| 363-490, gnl|echTel1|scaffold_288019 (189199-189056) | |
| 363-490, gnl|fr1|chrUn (168553403-168553275) | |
| 363-490, gnl|galGal2|chr19 (5809825-5809961) | |
| 363-490, gnl|hg17|chr17 (25622399-25622542) | |
| 363-490, gnl|Hg17|chr17 (25622537-25622409) | |
| 363-490, gnl|loxAfr1|scaffold_10962 (45175-45031) | |
| 363-490, gnl|mm7|chr11 (77050313-77050171) | |
| 363-490, gnl|Mm7|chr11 (77050174-77050301) | |
| 363-490, gnl|monDom2|scaffold_86 (681905-682054) | |
| 363-490, gnl|oryCun1|scaffold_204493 (98917-98774) | |
| 363-490, gnl|panTro1|chr19 (28986813-28986956) | |
| 363-490, gnl|rheMac2|chr16 (25509417-25509560) | |
| 363-490, gnl|rn3|chr10 (67228742-67228884) | |
| 363-490, gnl|tetNig1|chrUn_random (15079813-15079686) | |
| 363-490, gnl|xenTro1|scaffold_1079 (320895-320742) | |
| 554-1521, gnl|bosTau2|chr19 (15769582-15768611) | |
| 554-1521, gnl|Hg17|chr17 (25600314-25599348) | |
| 554-1521, gnl|Mm7|chr11 (77068049-77068954) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1536, gnl|bosTau2|chr6 (64844189-64845699) | |
| 1-1536, gnl|Hg17|chr17 (25625325-25599344) | |
| 1-1536, gnl|Mm7|chr11 (77047406-77068948) | |
| 139-311, gnl|bosTau2|chr19 (15790558-15790385) | |
| 139-311, gnl|Hg17|chr17 (25624045-25623872) | |
| 139-311, gnl|Mm7|chr11 (77048305-77048485) | |
| 363-490, gnl|bosTau2|chr19 (15788574-15788446) | |
| 363-490, gnl|canFam2|chr9 (47617605-47617748) | |
| 363-490, gnl|danRer3|chr15 (34893842-34893988) | |
| 363-490, gnl|dasNov1|scaffold_97610 (4915-4772) | |
| 363-490, gnl|echTel1|scaffold_288019 (189199-189056) | |
| 363-490, gnl|fr1|chrUn (168553403-168553275) | |
| 363-490, gnl|galGal2|chr19 (5809825-5809961) | |
| 363-490, gnl|hg17|chr17 (25622399-25622542) | |
| 363-490, gnl|Hg17|chr17 (25622537-25622409) | |
| 363-490, gnl|loxAfr1|scaffold_10962 (45175-45031) | |
| 363-490, gnl|mm7|chr11 (77050313-77050171) | |
| 363-490, gnl|Mm7|chr11 (77050174-77050301) | |
| 363-490, gnl|monDom2|scaffold_86 (681905-682054) | |
| 363-490, gnl|oryCun1|scaffold_204493 (98917-98774) | |
| 363-490, gnl|panTro1|chr19 (28986813-28986956) | |
| 363-490, gnl|rheMac2|chr16 (25509417-25509560) | |
| 363-490, gnl|rn3|chr10 (67228742-67228884) | |
| 363-490, gnl|tetNig1|chrUn_random (15079813-15079686) | |
| 363-490, gnl|xenTro1|scaffold_1079 (320895-320742) | |
| 554-1521, gnl|bosTau2|chr19 (15769582-15768611) | |
| 554-1521, gnl|Hg17|chr17 (25600314-25599348) | |
| 554-1521, gnl|Mm7|chr11 (77068049-77068954) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| ssp (0.406559) | |
| fcc (0.39557) | |
| fbs (0.350693) | |
| sme (0.305437) | |
| ldo (0.291008) | |
| che (0.272628) | |
| pla (0.267344) | |
| bla (0.248694) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fli (0.202881) | |
| sto (0.179824) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ste (0.135208) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.406559) | |
| fcc (0.39557) | |
| fbs (0.350693) | |
| sme (0.305437) | |
| ldo (0.291008) | |
| che (0.272628) | |
| pla (0.267344) | |
| bla (0.248694) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fli (0.202881) | |
| sto (0.179824) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ste (0.135208) | |
| sug (0.127291) | |
| thg (0.126791) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| nbm (0.0993246) |