Non-Coding RNA Search

Ss1.1-Pig4-TMW8031M08.3

Sequence:


               
               TGGCGCGCTTCTTCCGCGCGGGCCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAG
TGTGGGGTCGTGCCGACAATGGCGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGT
CCCTTACAAAGCGTGAGCCGTTCCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAG
AGCAATTCCACGTCACGAGAGAAAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGA
ATAACAAGGAAGCAGGAATGTATCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTG
AGAAAAAGTACTGCTCTGGCACTGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTG
GCTCTGATGAGAGTGACACAGGGATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTC
GCACGGAGGTTGTCTGCAAGCAGTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGAC
CTGGGCCTACAGGTCAGAGGTTTTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGA
AACACTGACCATCGCCAGGAGTCCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTT
TCATAATTTATGCAAATGACTAGTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCA
TACCTTCTCTAATTCATTACCTGGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAAT
TTCACGGAATGACAGAGGGGCAGTCCTTTCCCTTAAATCAACATCTGTGGGCTTTGCCAG
GACCAGAGGGCATGACTCTTTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCC
TATAAAACTATGCTGAATTTTCCATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGAG
AGGTCAAACGAGAAGAGGAATGAAAATACGGGATGAGGATGATCCACAGTCCCAGTGTGG
AAAAGGCAATAAGGAGGCAGGTTGTGGACGAGCTGCGTTTGGGGAGGCACATGTGGGGAT
CCACGGGATGCAGGAGATTTTTCCCAAAACCTTAGACTGTCTTGAACATTCTAATTCCAA
CCTCTCTACCTGCAACTAACTTTCAATGGGCGTTTGTTAAACTTTAGTGATAATGAATAC
AAGTGGCTACAAAGTTAAACTTTAAAATGTTCAAATAAAATATTTAAATTTGAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGCGCTTCTTCCGCGCGGGCCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAG
TGTGGGGTCGTGCCGACAATGGCGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGT
CCCTTACAAAGCGTGAGCCGTTCCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAG
AGCAATTCCACGTCACGAGAGAAAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGA
ATAACAAGGAAGCAGGAATGTATCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTG
AGAAAAAGTACTGCTCTGGCACTGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTG
GCTCTGATGAGAGTGACACAGGGATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTC
GCACGGAGGTTGTCTGCAAGCAGTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGAC
CTGGGCCTACAGGTCAGAGGTTTTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGA
AACACTGACCATCGCCAGGAGTCCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTT
TCATAATTTATGCAAATGACTAGTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCA
TACCTTCTCTAATTCATTACCTGGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAAT
TTCACGGAATGACAGAGGGGCAGTCCTTTCCCTTAAATCAACATCTGTGGGCTTTGCCAG
GACCAGAGGGCATGACTCTTTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCC
TATAAAACTATGCTGAATTTTCCATTGCAGTCAAGTGTTTCACAGACATGTATAGGTGAG
AGGTCAAACGAGAAGAGGAATGAAAATACGGGATGAGGATGATCCACAGTCCCAGTGTGG
AAAAGGCAATAAGGAGGCAGGTTGTGGACGAGCTGCGTTTGGGGAGGCACATGTGGGGAT
CCACGGGATGCAGGAGATTTTTCCCAAAACCTTAGACTGTCTTGAACATTCTAATTCCAA
CCTCTCTACCTGCAACTAACTTTCAATGGGCGTTTGTTAAACTTTAGTGATAATGAATAC
AAGTGGCTACAAAGTTAAACTTTAAAATGTTCAAATAAAATATTTAAATTTGAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55957250|emb|CAI12665.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55957250|emb|CAI12665.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               115-218, gnl|bosTau2|chr13 (18315350-18315247)
               

               
               115-218, gnl|Hg17|chr10 (23433076-23433179)
               

               
               115-218, gnl|Mm7|chr2 (19443318-19443421)
               


               
               293-443, gnl|bosTau2|chr13 (18297710-18297560)
               

               
               293-443, gnl|Hg17|chr10 (23448236-23448386)
               

               
               293-443, gnl|Mm7|chr2 (19458364-19458514)
               


               
               659-1186, gnl|bosTau2|chr13 (18296128-18295582)
               

               
               659-1186, gnl|Hg17|chr10 (23450339-23450938)
               

               
               659-1186, gnl|Mm7|chr2 (19459636-19460125)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-218, gnl|bosTau2|chr13 (18315350-18315247)
               

               
               115-218, gnl|Hg17|chr10 (23433076-23433179)
               

               
               115-218, gnl|Mm7|chr2 (19443318-19443421)
               


               
               293-443, gnl|bosTau2|chr13 (18297710-18297560)
               

               
               293-443, gnl|Hg17|chr10 (23448236-23448386)
               

               
               293-443, gnl|Mm7|chr2 (19458364-19458514)
               


               
               659-1186, gnl|bosTau2|chr13 (18296128-18295582)
               

               
               659-1186, gnl|Hg17|chr10 (23450339-23450938)
               

               
               659-1186, gnl|Mm7|chr2 (19459636-19460125)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cst (0.420109)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	115-218, gnl\|bosTau2\|chr13 (18315350-18315247)
	115-218, gnl\|Hg17\|chr10 (23433076-23433179)
	115-218, gnl\|Mm7\|chr2 (19443318-19443421)

	293-443, gnl\|bosTau2\|chr13 (18297710-18297560)
	293-443, gnl\|Hg17\|chr10 (23448236-23448386)
	293-443, gnl\|Mm7\|chr2 (19458364-19458514)

	659-1186, gnl\|bosTau2\|chr13 (18296128-18295582)
	659-1186, gnl\|Hg17\|chr10 (23450339-23450938)
	659-1186, gnl\|Mm7\|chr2 (19459636-19460125)

	cst (0.420109)
	cmu (0.372787)
	fty (0.351679)
	che (0.272628)
	fce (0.271592)
	thg (0.253582)
	cbe (0.239234)
	ece (0.229305)
	hea (0.204499)
	ldo (0.194005)
	ton (0.1755)
	nje (0.16592)
	cki (0.165235)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)