Ss1.1-Pig4-TMW8031M12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCATCTCTCAGAGATCTAGAACTTGCTTACCAGGTCCATGGCCTTTTAAACACTGGAGA CAACTGGAAATTGATTGGATCTGATCATCGTCGTAATTTCTATTACTCCAAATTCTTTAA TTTGCTTTGCTTCATGGAACAAATTGATGTCACCTTGAAGTGGTACAAGGATCTGATACC TTCAGTCTTCTTTCCCCATTCCCAAACGATGATAGACCTTCTCCAAGCATTAGATGTGGC CAACCGGCTAGATATGGTTCCTCAGATCTGGAAAGATAGTAAAGAATACGGTCACACTTT CCGCAATGAACTGAAAGAGGAGATTCTGATGCTCATGGCAAGGGACCAGCACCCACCAGA GCTGCAGGTGGCGTTTGCTGACTGTGCTGCAGATATCAAATCGACTTACGAAAGCCAGGA TGCCAGACAGACTGCTCCCGAGTGGCCTGCCAGCTCTCTGAACTATGTGGCTGTCCTCTT CCTAAGGGCCGGGAGGACCCAGGAAGCCTGGAAAATGTTGGGGCTTTTCAGGAAGCATAA TAAGATCCCTAGGGCTGAGTTGCTAAATGAGTTTCTGGACAGTGCAAAAGCATCCAGCAG CCCTGCCCAGGCCATCGAGCTAGTGAAGCTGGCAAGTGCCTTCAGCTTGCCTGTTTGTGA GGGCCTCACCCGGAGAGTAATGGCTGAGTTCACGCTCACCCAGGAGCAGAGGGAAGCCCT GGGAGAGCTAACTGCATTGACCAGTGACAGCAGCAGTGACAGTGACAGCGACAGTGACAG CGACATCAGTGAAGGCAAATGAAAGTGGGTGAATCAGGAGCAGCTGTGGCCTAGCACACT GCTGCAGTTGCCCTTGAGAACTGCAGCGTTGACTGATTTAGGTTAAATTCCTAGACTAAA ACGGCCATGCACGCACAGAAGCGCCACTGCCGTTTTCTTTGAACACATTATGTGGTACAT GGCCCCTCGTTTCCCGTGCAGTGTCTGTCCACTGCTGTCAGTGCACTTTGCCCTCCCCCA TCATGGACTTCAGCCTCTCTTGGCTGACGCTGTGACACTGGCGCTTCCTCCACCGCAGAG AAAGCGTCTGAAGGAGTCTCCATACAGTTATATCACAGTTGGTCAGTAGTATCCCAGCCT CGGGGATGTTTATGTGGAAAATTTGCATCAGAGAAAACTGATTAAACAACAGTGGCAGGA GTTTGGGCTGCACAGCTGGGAAAATGAAAGCTGTGAGTAAATGTTGTAATTAAGGTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCATCTCTCAGAGATCTAGAACTTGCTTACCAGGTCCATGGCCTTTTAAACACTGGAGA CAACTGGAAATTGATTGGATCTGATCATCGTCGTAATTTCTATTACTCCAAATTCTTTAA TTTGCTTTGCTTCATGGAACAAATTGATGTCACCTTGAAGTGGTACAAGGATCTGATACC TTCAGTCTTCTTTCCCCATTCCCAAACGATGATAGACCTTCTCCAAGCATTAGATGTGGC CAACCGGCTAGATATGGTTCCTCAGATCTGGAAAGATAGTAAAGAATACGGTCACACTTT CCGCAATGAACTGAAAGAGGAGATTCTGATGCTCATGGCAAGGGACCAGCACCCACCAGA GCTGCAGGTGGCGTTTGCTGACTGTGCTGCAGATATCAAATCGACTTACGAAAGCCAGGA TGCCAGACAGACTGCTCCCGAGTGGCCTGCCAGCTCTCTGAACTATGTGGCTGTCCTCTT CCTAAGGGCCGGGAGGACCCAGGAAGCCTGGAAAATGTTGGGGCTTTTCAGGAAGCATAA TAAGATCCCTAGGGCTGAGTTGCTAAATGAGTTTCTGGACAGTGCAAAAGCATCCAGCAG CCCTGCCCAGGCCATCGAGCTAGTGAAGCTGGCAAGTGCCTTCAGCTTGCCTGTTTGTGA GGGCCTCACCCGGAGAGTAATGGCTGAGTTCACGCTCACCCAGGAGCAGAGGGAAGCCCT GGGAGAGCTAACTGCATTGACCAGTGACAGCAGCAGTGACAGTGACAGCGACAGTGACAG CGACATCAGTGAAGGCAAATGAAAGTGGGTGAATCAGGAGCAGCTGTGGCCTAGCACACT GCTGCAGTTGCCCTTGAGAACTGCAGCGTTGACTGATTTAGGTTAAATTCCTAGACTAAA ACGGCCATGCACGCACAGAAGCGCCACTGCCGTTTTCTTTGAACACATTATGTGGTACAT GGCCCCTCGTTTCCCGTGCAGTGTCTGTCCACTGCTGTCAGTGCACTTTGCCCTCCCCCA TCATGGACTTCAGCCTCTCTTGGCTGACGCTGTGACACTGGCGCTTCCTCCACCGCAGAG AAAGCGTCTGAAGGAGTCTCCATACAGTTATATCACAGTTGGTCAGTAGTATCCCAGCCT CGGGGATGTTTATGTGGAAAATTTGCATCAGAGAAAACTGATTAAACAACAGTGGCAGGA GTTTGGGCTGCACAGCTGGGAAAATGAAAGCTGTGAGTAAATGTTGTAATTAAGGTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 551-669, + strand, RNAz p=0.683415 | |
| 1013-1120, - strand, RNAz p=0.661464 | |
| 1025-1129, - strand, RNAz p=0.998202 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 551-669, + strand, RNAz p=0.683415 | |
| 1013-1120, - strand, RNAz p=0.661464 | |
| 1025-1129, - strand, RNAz p=0.998202 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-105, gnl|bosTau2|chr11 (33787008-33786904) | |
| 1-105, gnl|canFam2|chr17 (42040755-42040615) | |
| 1-105, gnl|danRer3|chr23 (13912927-13913049) | |
| 1-105, gnl|dasNov1|scaffold_8947 (683-818) | |
| 1-105, gnl|echTel1|scaffold_323231 (83673-83793) | |
| 1-105, gnl|fr1|chrUn (266049451-266049586) | |
| 1-105, gnl|galGal2|chr4 (85552040-85552156) | |
| 1-105, gnl|hg17|chr2 (86271076-86271213) | |
| 1-105, gnl|Hg17|chr2 (86271101-86271205) | |
| 1-105, gnl|mm7|chr6 (71906615-71906482) | |
| 1-105, gnl|Mm7|chr6 (71906592-71906488) | |
| 1-105, gnl|monDom2|scaffold_63 (341288-341407) | |
| 1-105, gnl|oryCun1|scaffold_210171 (254477-254612) | |
| 1-105, gnl|panTro1|chr12 (89149800-89149939) | |
| 1-105, gnl|rheMac2|chr13 (86716947-86717084) | |
| 1-105, gnl|rn3|chr4 (105411859-105411726) | |
| 360-511, gnl|bosTau2|chr11 (33784037-33783886) | |
| 360-511, gnl|canFam2|chr17 (42037800-42037638) | |
| 360-511, gnl|canFam2|chr17 (42037795-42037688) | |
| 360-511, gnl|danRer3|chr23 (13923125-13923294) | |
| 360-511, gnl|echTel1|scaffold_323231 (87968-88135) | |
| 360-511, gnl|echTel1|scaffold_323231 (87974-88088) | |
| 360-511, gnl|fr1|chrUn (266050606-266050744) | |
| 360-511, gnl|galGal2|chr4 (85554362-85554523) | |
| 360-511, gnl|hg17|chr19 (62380356-62380479) | |
| 360-511, gnl|hg17|chr2 (86273614-86273776) | |
| 360-511, gnl|Hg17|chr2 (86273618-86273769) | |
| 360-511, gnl|mm7|chr6 (71901531-71901369) | |
| 360-511, gnl|mm7|chr6 (71901524-71901419) | |
| 360-511, gnl|Mm7|chr6 (71901525-71901374) | |
| 360-511, gnl|monDom2|scaffold_63 (343594-343756) | |
| 360-511, gnl|oryCun1|scaffold_112174 (8680-8803) | |
| 360-511, gnl|oryCun1|scaffold_172340 (47080-46918) | |
| 360-511, gnl|panTro1|chr12 (89152341-89152503) | |
| 360-511, gnl|panTro1|chr20 (60113022-60113140) | |
| 360-511, gnl|rheMac2|chr13 (86719559-86719721) | |
| 360-511, gnl|rheMac2|chr19 (63028303-63028445) | |
| 360-511, gnl|rn3|chr4 (105407105-105406943) | |
| 360-511, gnl|rn3|chr4 (105407098-105406993) | |
| 360-511, gnl|xenTro1|scaffold_149 (555827-555986) | |
| 551-716, gnl|bosTau2|chr11 (33781649-33781484) | |
| 551-716, gnl|canFam2|chr17 (42035800-42035659) | |
| 551-716, gnl|canFam2|chr17 (42035765-42035659) | |
| 551-716, gnl|danRer3|chr23 (13925815-13925939) | |
| 551-716, gnl|dasNov1|scaffold_8947 (5085-5228) | |
| 551-716, gnl|dasNov1|scaffold_8947 (5119-5228) | |
| 551-716, gnl|echTel1|scaffold_323231 (90041-90182) | |
| 551-716, gnl|echTel1|scaffold_323231 (90076-90182) | |
| 551-716, gnl|galGal2|chr4 (85556274-85556416) | |
| 551-716, gnl|hg17|chr19 (62380860-62380958) | |
| 551-716, gnl|hg17|chr2 (86275727-86275868) | |
| 551-716, gnl|Hg17|chr2 (86275761-86275926) | |
| 551-716, gnl|loxAfr1|scaffold_13954 (36791-36685) | |
| 551-716, gnl|loxAfr1|scaffold_152259 (4618-4759) | |
| 551-716, gnl|mm7|chr6 (71899632-71899492) | |
| 551-716, gnl|mm7|chr6 (71899598-71899492) | |
| 551-716, gnl|Mm7|chr6 (71899597-71899432) | |
| 551-716, gnl|monDom2|scaffold_63 (345208-345349) | |
| 551-716, gnl|oryCun1|scaffold_112174 (8871-8977) | |
| 551-716, gnl|oryCun1|scaffold_172340 (44318-44178) | |
| 551-716, gnl|panTro1|chr12 (89154456-89154597) | |
| 551-716, gnl|panTro1|chr20 (60113521-60113627) | |
| 551-716, gnl|rheMac2|chr13 (86721669-86721810) | |
| 551-716, gnl|rheMac2|chr19 (63028826-63028941) | |
| 551-716, gnl|rn3|chr4 (105405385-105405244) | |
| 551-716, gnl|rn3|chr4 (105405350-105405244) | |
| 551-716, gnl|xenTro1|scaffold_149 (556634-556750) | |
| 986-1147, gnl|bosTau2|chr11 (33780848-33780680) | |
| 986-1147, gnl|hg17|chr19 (62381826-62382083) | |
| 986-1147, gnl|Hg17|chr2 (86276646-86276835) | |
| 986-1147, gnl|oryCun1|scaffold_112174 (9332-9579) | |
| 986-1147, gnl|panTro1|chr20 (60114505-60114762) | |
| 986-1147, gnl|rheMac2|chr13 (86722626-86722872) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-105, gnl|bosTau2|chr11 (33787008-33786904) | |
| 1-105, gnl|canFam2|chr17 (42040755-42040615) | |
| 1-105, gnl|danRer3|chr23 (13912927-13913049) | |
| 1-105, gnl|dasNov1|scaffold_8947 (683-818) | |
| 1-105, gnl|echTel1|scaffold_323231 (83673-83793) | |
| 1-105, gnl|fr1|chrUn (266049451-266049586) | |
| 1-105, gnl|galGal2|chr4 (85552040-85552156) | |
| 1-105, gnl|hg17|chr2 (86271076-86271213) | |
| 1-105, gnl|Hg17|chr2 (86271101-86271205) | |
| 1-105, gnl|mm7|chr6 (71906615-71906482) | |
| 1-105, gnl|Mm7|chr6 (71906592-71906488) | |
| 1-105, gnl|monDom2|scaffold_63 (341288-341407) | |
| 1-105, gnl|oryCun1|scaffold_210171 (254477-254612) | |
| 1-105, gnl|panTro1|chr12 (89149800-89149939) | |
| 1-105, gnl|rheMac2|chr13 (86716947-86717084) | |
| 1-105, gnl|rn3|chr4 (105411859-105411726) | |
| 360-511, gnl|bosTau2|chr11 (33784037-33783886) | |
| 360-511, gnl|canFam2|chr17 (42037800-42037638) | |
| 360-511, gnl|canFam2|chr17 (42037795-42037688) | |
| 360-511, gnl|danRer3|chr23 (13923125-13923294) | |
| 360-511, gnl|echTel1|scaffold_323231 (87968-88135) | |
| 360-511, gnl|echTel1|scaffold_323231 (87974-88088) | |
| 360-511, gnl|fr1|chrUn (266050606-266050744) | |
| 360-511, gnl|galGal2|chr4 (85554362-85554523) | |
| 360-511, gnl|hg17|chr19 (62380356-62380479) | |
| 360-511, gnl|hg17|chr2 (86273614-86273776) | |
| 360-511, gnl|Hg17|chr2 (86273618-86273769) | |
| 360-511, gnl|mm7|chr6 (71901531-71901369) | |
| 360-511, gnl|mm7|chr6 (71901524-71901419) | |
| 360-511, gnl|Mm7|chr6 (71901525-71901374) | |
| 360-511, gnl|monDom2|scaffold_63 (343594-343756) | |
| 360-511, gnl|oryCun1|scaffold_112174 (8680-8803) | |
| 360-511, gnl|oryCun1|scaffold_172340 (47080-46918) | |
| 360-511, gnl|panTro1|chr12 (89152341-89152503) | |
| 360-511, gnl|panTro1|chr20 (60113022-60113140) | |
| 360-511, gnl|rheMac2|chr13 (86719559-86719721) | |
| 360-511, gnl|rheMac2|chr19 (63028303-63028445) | |
| 360-511, gnl|rn3|chr4 (105407105-105406943) | |
| 360-511, gnl|rn3|chr4 (105407098-105406993) | |
| 360-511, gnl|xenTro1|scaffold_149 (555827-555986) | |
| 551-716, gnl|bosTau2|chr11 (33781649-33781484) | |
| 551-716, gnl|canFam2|chr17 (42035800-42035659) | |
| 551-716, gnl|canFam2|chr17 (42035765-42035659) | |
| 551-716, gnl|danRer3|chr23 (13925815-13925939) | |
| 551-716, gnl|dasNov1|scaffold_8947 (5085-5228) | |
| 551-716, gnl|dasNov1|scaffold_8947 (5119-5228) | |
| 551-716, gnl|echTel1|scaffold_323231 (90041-90182) | |
| 551-716, gnl|echTel1|scaffold_323231 (90076-90182) | |
| 551-716, gnl|galGal2|chr4 (85556274-85556416) | |
| 551-716, gnl|hg17|chr19 (62380860-62380958) | |
| 551-716, gnl|hg17|chr2 (86275727-86275868) | |
| 551-716, gnl|Hg17|chr2 (86275761-86275926) | |
| 551-716, gnl|loxAfr1|scaffold_13954 (36791-36685) | |
| 551-716, gnl|loxAfr1|scaffold_152259 (4618-4759) | |
| 551-716, gnl|mm7|chr6 (71899632-71899492) | |
| 551-716, gnl|mm7|chr6 (71899598-71899492) | |
| 551-716, gnl|Mm7|chr6 (71899597-71899432) | |
| 551-716, gnl|monDom2|scaffold_63 (345208-345349) | |
| 551-716, gnl|oryCun1|scaffold_112174 (8871-8977) | |
| 551-716, gnl|oryCun1|scaffold_172340 (44318-44178) | |
| 551-716, gnl|panTro1|chr12 (89154456-89154597) | |
| 551-716, gnl|panTro1|chr20 (60113521-60113627) | |
| 551-716, gnl|rheMac2|chr13 (86721669-86721810) | |
| 551-716, gnl|rheMac2|chr19 (63028826-63028941) | |
| 551-716, gnl|rn3|chr4 (105405385-105405244) | |
| 551-716, gnl|rn3|chr4 (105405350-105405244) | |
| 551-716, gnl|xenTro1|scaffold_149 (556634-556750) | |
| 986-1147, gnl|bosTau2|chr11 (33780848-33780680) | |
| 986-1147, gnl|hg17|chr19 (62381826-62382083) | |
| 986-1147, gnl|Hg17|chr2 (86276646-86276835) | |
| 986-1147, gnl|oryCun1|scaffold_112174 (9332-9579) | |
| 986-1147, gnl|panTro1|chr20 (60114505-60114762) | |
| 986-1147, gnl|rheMac2|chr13 (86722626-86722872) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| eye (0.341006) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| csp (0.161186) | |
| ssp (0.13552) | |
| ese (0.126502) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| csp (0.161186) | |
| ssp (0.13552) | |
| ese (0.126502) |