Non-Coding RNA Search

Ss1.1-Pig4-TMW8031M21.3

Sequence:


               
               TTTTTTTTTTTTTGCTTTTTTGCTTTGTTTCCTCCTCTGTCTGTATCCCTCCACCCTCAA
ATACTTTGGGACTACTCTAACAAGAACTTTAAAGTGTTTCATTTTAAAAATGAAGGGGAA
GGAGGACGACGATACTATAAACATTCAGTAGAGATTGAATAGATAATAAAAGCTGAACTT
TAAAAAAATTATTATACTTCAAAATGGTAAGTTATATAGGGAGCAGCAGCAACCAGGTGC
TAATTTATTTGGGTGTGGTGTAAGCAACATCTCCGAATCTTTTAAAAGAACAAAATACTA
CAACCGTGTGTGTCATTGCGGCTTTGATATTTTAATTTTCTTTTTTCCTTTCAGAAATCT
TATAGCCTTATTCTAGTTGTACTTTGGAATTTTCATTCACAAAAAGAGTTTTAAAACTTT
TTTTGTGTTTTCATTCACAAAAAGAGTTTTACAAGTGAGACTTTGTTTACAGAAATTTCT
CTAAAACAGGTCATAACAGTGTTTAAAATCTCAGTTTCTTAGGTGACTTGGAACCTATTG
CACTGGCTTTATAGGTTACTGAGAAGCTGATATTTTGAAAGTGTTTATAGACCTTTGTTA
TAAAAATGAATGTCCTGAAAAAGGGGGGGGGGGTGCAAGTATGGTTCAATAATAAAAGAA
ACAAGAATGTAGTGGTGTTTAAATTTATACTTGTTAAAAATGTCATCTCAAGTCAAGTCA
CTGGTCTGTTTGCATTTGATACATTTTTATACTAACTGGCATTGTAAAATTATTTCATGA
TTAGAAAATACCTGTGGATATTTGTATAAAAGTGTGAAATAAATTTTTTTATGAAAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTGCTTTTTTGCTTTGTTTCCTCCTCTGTCTGTATCCCTCCACCCTCAA
ATACTTTGGGACTACTCTAACAAGAACTTTAAAGTGTTTCATTTTAAAAATGAAGGGGAA
GGAGGACGACGATACTATAAACATTCAGTAGAGATTGAATAGATAATAAAAGCTGAACTT
TAAAAAAATTATTATACTTCAAAATGGTAAGTTATATAGGGAGCAGCAGCAACCAGGTGC
TAATTTATTTGGGTGTGGTGTAAGCAACATCTCCGAATCTTTTAAAAGAACAAAATACTA
CAACCGTGTGTGTCATTGCGGCTTTGATATTTTAATTTTCTTTTTTCCTTTCAGAAATCT
TATAGCCTTATTCTAGTTGTACTTTGGAATTTTCATTCACAAAAAGAGTTTTAAAACTTT
TTTTGTGTTTTCATTCACAAAAAGAGTTTTACAAGTGAGACTTTGTTTACAGAAATTTCT
CTAAAACAGGTCATAACAGTGTTTAAAATCTCAGTTTCTTAGGTGACTTGGAACCTATTG
CACTGGCTTTATAGGTTACTGAGAAGCTGATATTTTGAAAGTGTTTATAGACCTTTGTTA
TAAAAATGAATGTCCTGAAAAAGGGGGGGGGGGTGCAAGTATGGTTCAATAATAAAAGAA
ACAAGAATGTAGTGGTGTTTAAATTTATACTTGTTAAAAATGTCATCTCAAGTCAAGTCA
CTGGTCTGTTTGCATTTGATACATTTTTATACTAACTGGCATTGTAAAATTATTTCATGA
TTAGAAAATACCTGTGGATATTTGTATAAAAGTGTGAAATAAATTTTTTTATGAAAGTGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               16-433, gnl|bosTau2|chr2 (17138428-17138033)
               

               
               16-433, gnl|Hg17|chr2 (173195661-173196059)
               

               
               16-433, gnl|Mm7|chr2 (71700913-71701576)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-433, gnl|bosTau2|chr2 (17138428-17138033)
               

               
               16-433, gnl|Hg17|chr2 (173195661-173196059)
               

               
               16-433, gnl|Mm7|chr2 (71700913-71701576)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               nms (0.213858)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               pty (0.142714)
               

               
               eje (0.0988338)

	16-433, gnl\|bosTau2\|chr2 (17138428-17138033)
	16-433, gnl\|Hg17\|chr2 (173195661-173196059)
	16-433, gnl\|Mm7\|chr2 (71700913-71701576)

	nms (0.213858)
	sag (0.182715)
	fbs (0.175346)
	rec (0.17307)
	mcp (0.170648)
	pty (0.142714)
	eje (0.0988338)