Non-Coding RNA Search

Ss1.1-Pig4-TMW8031N05.5

Sequence:


               
               GAATGCTGAACTTCTTAATGGGGAAAAAATAATAATAAAAACCTCCAGAGGTCAAAGATA
GACAAGAGAGAAATGTTGGCCAAAGGGAGGACAGGAAAGATAAACTGACTTTCTGTTTCC
AAAATGGGCTGGCTATATTAAAGAGTTACTCCCATTTGGCAAATCTATTCTGATAATTCT
TTTTCTAGGTGAGAGTGTTTCTTATATATTAGTAATTTCTGCTTACTCATTAACTATGCT
TTGCAACAGGGCTTTCAAATAGGAGTTTTCTGTTTGTTTATTTGTTGCCTAGGCTAGATT
GAGTAACTCTTAGTTTTTAGCAGCTCTGAGTTTACTGATAAGGCTGGGAAGCAGAGGAAG
TACTATAAAGACAGGGCTGCTTAAGGAAACCCTGTTCTGTGATTGATAAGGGAATATCAC
GACATGTGATGCAAAATTGGTTGAGAATTTTTTTCTGAGAAATTGCTCTTTGCCCTCCTT
TTATAATCTCTTTATTTTTTTCTGCTACAATATTAAAGAGTACAATATTAAAGAGAATAA
TATGATATCTGTGAGGGAGGCATATATTTTATAACCCTTGCTGTGCTTTTGCCTAGGGAA
ACAAGATAGGGCTTTAGACAGCTACACTCGCCTGCGGATGCATGTTGTCACTGCTGCTTC
AATTTATCAGATGCCCTGGAACCTCTAAGTTTTGGTTTCACTTCAAATATTACCTGTACT
TTCAAATAAAGAAACAATGATGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGCTGAACTTCTTAATGGGGAAAAAATAATAATAAAAACCTCCAGAGGTCAAAGATA
GACAAGAGAGAAATGTTGGCCAAAGGGAGGACAGGAAAGATAAACTGACTTTCTGTTTCC
AAAATGGGCTGGCTATATTAAAGAGTTACTCCCATTTGGCAAATCTATTCTGATAATTCT
TTTTCTAGGTGAGAGTGTTTCTTATATATTAGTAATTTCTGCTTACTCATTAACTATGCT
TTGCAACAGGGCTTTCAAATAGGAGTTTTCTGTTTGTTTATTTGTTGCCTAGGCTAGATT
GAGTAACTCTTAGTTTTTAGCAGCTCTGAGTTTACTGATAAGGCTGGGAAGCAGAGGAAG
TACTATAAAGACAGGGCTGCTTAAGGAAACCCTGTTCTGTGATTGATAAGGGAATATCAC
GACATGTGATGCAAAATTGGTTGAGAATTTTTTTCTGAGAAATTGCTCTTTGCCCTCCTT
TTATAATCTCTTTATTTTTTTCTGCTACAATATTAAAGAGTACAATATTAAAGAGAATAA
TATGATATCTGTGAGGGAGGCATATATTTTATAACCCTTGCTGTGCTTTTGCCTAGGGAA
ACAAGATAGGGCTTTAGACAGCTACACTCGCCTGCGGATGCATGTTGTCACTGCTGCTTC
AATTTATCAGATGCCCTGGAACCTCTAAGTTTTGGTTTCACTTCAAATATTACCTGTACT
TTCAAATAAAGAAACAATGATGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               25-134, - strand, RNAz p=0.988956
               

               
               215-334, - strand, RNAz p=0.590913

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-134, - strand, RNAz p=0.988956
               

               
               215-334, - strand, RNAz p=0.590913

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr1 (49492479-49493232)
               

               
               1-744, gnl|Hg17|chr3 (187943236-187944102)
               

               
               1-744, gnl|Mm7|chr16 (22738923-22740010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr1 (49492479-49493232)
               

               
               1-744, gnl|Hg17|chr3 (187943236-187944102)
               

               
               1-744, gnl|Mm7|chr16 (22738923-22740010)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lun (0.902935)
               

               
               fli (0.405762)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.902935)
               

               
               fli (0.405762)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)

	25-134, - strand, RNAz p=0.988956
	215-334, - strand, RNAz p=0.590913

	1-744, gnl\|bosTau2\|chr1 (49492479-49493232)
	1-744, gnl\|Hg17\|chr3 (187943236-187944102)
	1-744, gnl\|Mm7\|chr16 (22738923-22740010)