Non-Coding RNA Search

Ss1.1-Pig4-TMW8031N09.5.5

Sequence:


               
               TTTTTTTTTTTCCATTTAGACCAAGAGTTTTATTCCAGTTACAATTTTTTCCTTCCTCAC
CCTCCCCCAAGACACAAGCTTATTGAAAGTCTGACAGGAATTGTTATTATGACAGTTGTA
TTCATGTGCTCTGGATGCCATAACCGAGACCACAGACTGGGTGGCTGAAGCAAGGCTTAT
TTTTTTCTCCATTCTAGCGGCCAGTAGTCCATCATTAAGGTGCCACCAAATTCCGTCTCC
ATTGAGGAAAGTGTTTGCAGAGGGCTCAGGTCGCCAATGGCTGCCAGTAGGTCAGATTGT
GTTTTGGGGGCGCTGTAAACATCCTGACACAGACTCCACGGCACAGGCCCGAGGCGGCTC
CATCAGCGTCCCCACAGCAGCCCTCTTGTGGCAGCAGGATGGGCCAGCTGTAGAAACCCC
TCCGGTGTGGAGTCGGCATCAGAAGCTTCCTTTTTGTCCACCTGTTTCTTTGGTGTGGAG
CCGGGCAGTTCTGGCCTCCCTGGGATCCGCCCCTGCGTTGTAGCTTGCTTAACGGAGCAC
GTCCCTTCTCCAGGCGTGGTTCGACCAGCAGAACGGGCGCACCTACCTCAAGTACTCCAT
CAAGGCGTTGGTGCAGAACGACACGCTGCTGCAGGTGAAGGGCACCGGTGCCAACGGCTC
CTTCAAGCTCAACCGCAAGAAGCTGGAGGGCGGCGGCGATCGGCGCGGAGCCCCGGCGCC
CGCCACCGCCCCGGCGCCTGCCGCTCACAAGGCCAAGAAAACAGCCCCGAGCGCGGCCGC
CCCGCGGCGCGCGGACAAGAAGCCCGCCAAGGGCCCGCAGCCCGAGAAGCGCTCGCACAA
AAAGGGCGCCTCCTCCAAGAAGGACAAAAGCAGCAACAAGGCCAAGAAGGCGGCGGCCGC
GGGAGGCAAGAAGGTGAAGAAGGCGGCCAAGCCCAGCGTCCCCAAAGTGCCCAAGGGCCG
CAAGTGAGCCCTGGGGCCTCGGGCCTCGCTTTTCCACCCAGAGCGCACGTAGGTTTTGCT
GGGGGCCCGGGCCAGCGCCGGCCCGCCCATCCCCCGCGTGAGAGCTTTTTTTTTTGTTGT
TGTTGTTAGCTCTAGATTTTTGAAACGGCCCTGGCGACTCCCCTATTGGCTCTCGCCCTT
GGCAACGCCTGTCGCCATGGTTACCAGCCCCCGGGCGCCAATGGCCGGCCGCGTCAGCCC
GCCCCGGCCTTACGCGTTGGCCGCGCAGCCCTTCCAGCCCATGCCCTCCCCGCCTTCCGG
CGCGCGACAAGCACTCTGCGCGGGGCCGCGCGGCGCTTTCTTTTCTCCTGTCGCCTTTTT
TGGGGCACAATAAATTGTTTAAACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTCCATTTAGACCAAGAGTTTTATTCCAGTTACAATTTTTTCCTTCCTCAC
CCTCCCCCAAGACACAAGCTTATTGAAAGTCTGACAGGAATTGTTATTATGACAGTTGTA
TTCATGTGCTCTGGATGCCATAACCGAGACCACAGACTGGGTGGCTGAAGCAAGGCTTAT
TTTTTTCTCCATTCTAGCGGCCAGTAGTCCATCATTAAGGTGCCACCAAATTCCGTCTCC
ATTGAGGAAAGTGTTTGCAGAGGGCTCAGGTCGCCAATGGCTGCCAGTAGGTCAGATTGT
GTTTTGGGGGCGCTGTAAACATCCTGACACAGACTCCACGGCACAGGCCCGAGGCGGCTC
CATCAGCGTCCCCACAGCAGCCCTCTTGTGGCAGCAGGATGGGCCAGCTGTAGAAACCCC
TCCGGTGTGGAGTCGGCATCAGAAGCTTCCTTTTTGTCCACCTGTTTCTTTGGTGTGGAG
CCGGGCAGTTCTGGCCTCCCTGGGATCCGCCCCTGCGTTGTAGCTTGCTTAACGGAGCAC
GTCCCTTCTCCAGGCGTGGTTCGACCAGCAGAACGGGCGCACCTACCTCAAGTACTCCAT
CAAGGCGTTGGTGCAGAACGACACGCTGCTGCAGGTGAAGGGCACCGGTGCCAACGGCTC
CTTCAAGCTCAACCGCAAGAAGCTGGAGGGCGGCGGCGATCGGCGCGGAGCCCCGGCGCC
CGCCACCGCCCCGGCGCCTGCCGCTCACAAGGCCAAGAAAACAGCCCCGAGCGCGGCCGC
CCCGCGGCGCGCGGACAAGAAGCCCGCCAAGGGCCCGCAGCCCGAGAAGCGCTCGCACAA
AAAGGGCGCCTCCTCCAAGAAGGACAAAAGCAGCAACAAGGCCAAGAAGGCGGCGGCCGC
GGGAGGCAAGAAGGTGAAGAAGGCGGCCAAGCCCAGCGTCCCCAAAGTGCCCAAGGGCCG
CAAGTGAGCCCTGGGGCCTCGGGCCTCGCTTTTCCACCCAGAGCGCACGTAGGTTTTGCT
GGGGGCCCGGGCCAGCGCCGGCCCGCCCATCCCCCGCGTGAGAGCTTTTTTTTTTGTTGT
TGTTGTTAGCTCTAGATTTTTGAAACGGCCCTGGCGACTCCCCTATTGGCTCTCGCCCTT
GGCAACGCCTGTCGCCATGGTTACCAGCCCCCGGGCGCCAATGGCCGGCCGCGTCAGCCC
GCCCCGGCCTTACGCGTTGGCCGCGCAGCCCTTCCAGCCCATGCCCTCCCCGCCTTCCGG
CGCGCGACAAGCACTCTGCGCGGGGCCGCGCGGCGCTTTCTTTTCTCCTGTCGCCTTTTT
TGGGGCACAATAAATTGTTTAAACCTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               H1X_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               H1X_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               553-1029, gnl|bosTau2|chr22 (47491408-47490933)
               

               
               553-1029, gnl|Hg17|chr3 (130517213-130516706)
               

               
               553-1029, gnl|Mm7|chr6 (88056222-88055779)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               553-1029, gnl|bosTau2|chr22 (47491408-47490933)
               

               
               553-1029, gnl|Hg17|chr3 (130517213-130516706)
               

               
               553-1029, gnl|Mm7|chr6 (88056222-88055779)

Expressed library(ies): 43 entry(ies)

More info

Expressed library(ies): 43 entry(ies)

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               pla (1.47039)
               

               
               lnt (1.13847)
               

               
               tes (1.03907)
               

               
               med (0.930016)
               

               
               fce (0.814775)
               

               
               ecc (0.805246)
               

               
               ese (0.759013)
               

               
               eru (0.720288)
               

               
               fty (0.703359)
               

               
               csp (0.644745)
               

               
               cag (0.604778)
               

               
               eje (0.593003)
               

               
               ebs (0.591506)
               

               
               pty (0.570858)
               

               
               jca (0.569801)
               

               
               nbm (0.496623)
               

               
               nco (0.485201)
               

               
               eli (0.455443)
               

               
               col (0.390016)
               

               
               eep (0.367692)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               ton (0.351)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 43 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (1.47039)
               

               
               lnt (1.13847)
               

               
               tes (1.03907)
               

               
               med (0.930016)
               

               
               fce (0.814775)
               

               
               ecc (0.805246)
               

               
               ese (0.759013)
               

               
               eru (0.720288)
               

               
               fty (0.703359)
               

               
               csp (0.644745)
               

               
               cag (0.604778)
               

               
               eje (0.593003)
               

               
               ebs (0.591506)
               

               
               pty (0.570858)
               

               
               jca (0.569801)
               

               
               nbm (0.496623)
               

               
               nco (0.485201)
               

               
               eli (0.455443)
               

               
               col (0.390016)
               

               
               eep (0.367692)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               ton (0.351)
               

               
               duo (0.345602)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               cov (0.264306)
               

               
               mas (0.210305)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cli (0.152812)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	553-1029, gnl\|bosTau2\|chr22 (47491408-47490933)
	553-1029, gnl\|Hg17\|chr3 (130517213-130516706)
	553-1029, gnl\|Mm7\|chr6 (88056222-88055779)

	pla (1.47039)
	lnt (1.13847)
	tes (1.03907)
	med (0.930016)
	fce (0.814775)
	ecc (0.805246)
	ese (0.759013)
	eru (0.720288)
	fty (0.703359)
	csp (0.644745)
	cag (0.604778)
	eje (0.593003)
	ebs (0.591506)
	pty (0.570858)
	jca (0.569801)
	nbm (0.496623)
	nco (0.485201)
	eli (0.455443)
	col (0.390016)
	eep (0.367692)
	sto (0.359648)
	pgl (0.35545)
	ton (0.351)
	duo (0.345602)
	eye (0.341006)
	fhi (0.339155)
	hyp (0.285673)
	cga (0.279096)
	cov (0.264306)
	mas (0.210305)
	jej (0.197844)
	fcc (0.197785)
	aor (0.195274)
	nlu (0.191681)
	nep (0.183925)
	ill (0.175593)
	mcp (0.170648)
	cut (0.169924)
	cli (0.152812)
	hlv (0.139256)
	ute (0.132784)
	cly (0.120642)
	cty (0.10408)