Ss1.1-Pig4-TMW8031N10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGGATTATGTGTTTCCTGCCAAGAAGAAGCTGCAGGAGTATCGTGTCTTGATTACCAC GCTCATCACTGCCAGCAGGTTGGTCTCGGCCCAGTTTCCCATCGACCACTTCACACATAT CTTCATCGATGAGGCTGGCCACTCTATGGAGCCAGAGAGTCTGGTGGCCATAGCAGGGCT GCTGGAAGTCAAGGAAGCAGACAATCCAGGAGGACAGCTGGTGCTGGCAGGAGACCCTCG GCAGCTGGGCCCTGTGCTGCGTTGCCCACTGACCCAGAAGCATGGACTGGGGTACTCACT GCTGGAGCGGCTGCTCACCTACAACGCCCTGTACAAGAAGGGCCCTGATGGCTATAATCC CCAGTTCATAACCAAGCTGCTCCGCAACTACAGGTCTCACCCCACCATCCTGGACATTCC TAACCAACTCTATTACGAAGGGGAGCTGCAGGCCTGTGCAGACGTTGTGGACCGGGAGCG CTTCTGCCGCTGGGAAGGTCTCCCTCGACAGGGCTTTCCCATCATCTTTCACGGTGTAAT GGGCAAGGATGAGCGTGAGGGCAACAGCCCATCCTTCTTCAATCCCGAAGAGGCTGCCAC AGTGACTTCCTACCTGAAGCAGCTCCTAACCTCCTCCTCCAAGAAGGGCAAAGCTCGGCT GAGCCCCCGAAGCGTGGGCGTCATCTCCCCATACCGGAAGCAGGTGGAAAAAATCCGTCA TTGCATCACAAAACTTGACAAGGAGCTTCGGGGACTGGATGACATCAAGGACTTGAAGGT GGGCTCCGTGGAAGAGTTCCAAGGCCAGGAGCGCAGCGTCATCCTCATCTCCACCGTGCG GAGCAGCCAAAGCTTTGTGCAGCTCGATCTGGACTTTAACCTGGGTTTCCTTAAGAACCC CAAGAGGTTCAACGTGGCTGTGACCCGAGCCAAGGCTCTGCTCATCGTGGTGGGCAACCC GCTCCTCCTGGGCCATGATCCCGACTGGAAAGCGTTCCTGGAGTTCTGTAAAGAAAACGG GGGGTACACCGGGTGCCCCTTCCCTGCCAAACTGGACCTGCAGCAAGGACAGAACTTACT CCAAGGTCTGAGCAAGCTCAGCCCCTCTACCTCAGGGCCCCGGAGTCACAACTACCTCCC CCAGGAGGGTGAAGGGGGTCTGCCCCTGCAAGTGGAGCCAGAGTGGAGGAATGAGCTCTG AGGACACAGCAGCCAGCCTTCTCACACCAGCCAAGCCTTAACCTCCCACCCGACCCTGAA CTAGACCCCGAACTAGACCCCGGCCTGAACCAGACTCCAGCTGCGCTGTACCTCTGGGGG ACAGGAAGGCTGGAGAGGGAGTTTACAACCACACCACCCCTTCCCTGCTGGGGAAAGTGA CACATCAAGCTGCTAACAATCGGGGGAAGGTGGAGGAAAAAAGTCTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGGATTATGTGTTTCCTGCCAAGAAGAAGCTGCAGGAGTATCGTGTCTTGATTACCAC GCTCATCACTGCCAGCAGGTTGGTCTCGGCCCAGTTTCCCATCGACCACTTCACACATAT CTTCATCGATGAGGCTGGCCACTCTATGGAGCCAGAGAGTCTGGTGGCCATAGCAGGGCT GCTGGAAGTCAAGGAAGCAGACAATCCAGGAGGACAGCTGGTGCTGGCAGGAGACCCTCG GCAGCTGGGCCCTGTGCTGCGTTGCCCACTGACCCAGAAGCATGGACTGGGGTACTCACT GCTGGAGCGGCTGCTCACCTACAACGCCCTGTACAAGAAGGGCCCTGATGGCTATAATCC CCAGTTCATAACCAAGCTGCTCCGCAACTACAGGTCTCACCCCACCATCCTGGACATTCC TAACCAACTCTATTACGAAGGGGAGCTGCAGGCCTGTGCAGACGTTGTGGACCGGGAGCG CTTCTGCCGCTGGGAAGGTCTCCCTCGACAGGGCTTTCCCATCATCTTTCACGGTGTAAT GGGCAAGGATGAGCGTGAGGGCAACAGCCCATCCTTCTTCAATCCCGAAGAGGCTGCCAC AGTGACTTCCTACCTGAAGCAGCTCCTAACCTCCTCCTCCAAGAAGGGCAAAGCTCGGCT GAGCCCCCGAAGCGTGGGCGTCATCTCCCCATACCGGAAGCAGGTGGAAAAAATCCGTCA TTGCATCACAAAACTTGACAAGGAGCTTCGGGGACTGGATGACATCAAGGACTTGAAGGT GGGCTCCGTGGAAGAGTTCCAAGGCCAGGAGCGCAGCGTCATCCTCATCTCCACCGTGCG GAGCAGCCAAAGCTTTGTGCAGCTCGATCTGGACTTTAACCTGGGTTTCCTTAAGAACCC CAAGAGGTTCAACGTGGCTGTGACCCGAGCCAAGGCTCTGCTCATCGTGGTGGGCAACCC GCTCCTCCTGGGCCATGATCCCGACTGGAAAGCGTTCCTGGAGTTCTGTAAAGAAAACGG GGGGTACACCGGGTGCCCCTTCCCTGCCAAACTGGACCTGCAGCAAGGACAGAACTTACT CCAAGGTCTGAGCAAGCTCAGCCCCTCTACCTCAGGGCCCCGGAGTCACAACTACCTCCC CCAGGAGGGTGAAGGGGGTCTGCCCCTGCAAGTGGAGCCAGAGTGGAGGAATGAGCTCTG AGGACACAGCAGCCAGCCTTCTCACACCAGCCAAGCCTTAACCTCCCACCCGACCCTGAA CTAGACCCCGAACTAGACCCCGGCCTGAACCAGACTCCAGCTGCGCTGTACCTCTGGGGG ACAGGAAGGCTGGAGAGGGAGTTTACAACCACACCACCCCTTCCCTGCTGGGGAAAGTGA CACATCAAGCTGCTAACAATCGGGGGAAGGTGGAGGAAAAAAGTCTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 292-410, - strand, RNAz p=0.780037 | |
| 549-668, - strand, RNAz p=0.543707 | |
| 995-1113, - strand, RNAz p=0.534209 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 292-410, - strand, RNAz p=0.780037 | |
| 549-668, - strand, RNAz p=0.543707 | |
| 995-1113, - strand, RNAz p=0.534209 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 174-410, gnl|bosTau2|chr3 (27402159-27402394) | |
| 174-410, gnl|Hg17|chr1 (112951291-112951526) | |
| 174-410, gnl|Mm7|chr3 (104592404-104592169) | |
| 510-705, gnl|bosTau2|chr3 (27403824-27404019) | |
| 510-705, gnl|Hg17|chr1 (112952949-112953144) | |
| 510-705, gnl|Mm7|chr3 (104590141-104589946) | |
| 777-904, gnl|bosTau2|chr3 (27405169-27405296) | |
| 777-904, gnl|canFam2|chr17 (65951960-65951828) | |
| 777-904, gnl|danRer3|chr6 (30365618-30365486) | |
| 777-904, gnl|echTel1|scaffold_310965 (85034-85166) | |
| 777-904, gnl|fr1|chrUn (131284294-131284162) | |
| 777-904, gnl|galGal2|chr26 (2120310-2120442) | |
| 777-904, gnl|hg17|chr1 (112954348-112954480) | |
| 777-904, gnl|Hg17|chr1 (112954347-112954474) | |
| 777-904, gnl|loxAfr1|scaffold_5140 (4830-4698) | |
| 777-904, gnl|mm7|chr3 (104588966-104588834) | |
| 777-904, gnl|Mm7|chr3 (104588965-104588838) | |
| 777-904, gnl|monDom2|scaffold_0 (2571291-2571159) | |
| 777-904, gnl|oryCun1|scaffold_75148 (347-215) | |
| 777-904, gnl|panTro1|chr1 (109304531-109304399) | |
| 777-904, gnl|rheMac2|chr1 (115689008-115689140) | |
| 777-904, gnl|rn3|chr2 (200018389-200018257) | |
| 777-904, gnl|tetNig1|chr11 (7570240-7570373) | |
| 995-1116, gnl|bosTau2|chr3 (27405846-27405967) | |
| 995-1116, gnl|Hg17|chr1 (112954884-112955005) | |
| 995-1116, gnl|Mm7|chr3 (104588423-104588302) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 174-410, gnl|bosTau2|chr3 (27402159-27402394) | |
| 174-410, gnl|Hg17|chr1 (112951291-112951526) | |
| 174-410, gnl|Mm7|chr3 (104592404-104592169) | |
| 510-705, gnl|bosTau2|chr3 (27403824-27404019) | |
| 510-705, gnl|Hg17|chr1 (112952949-112953144) | |
| 510-705, gnl|Mm7|chr3 (104590141-104589946) | |
| 777-904, gnl|bosTau2|chr3 (27405169-27405296) | |
| 777-904, gnl|canFam2|chr17 (65951960-65951828) | |
| 777-904, gnl|danRer3|chr6 (30365618-30365486) | |
| 777-904, gnl|echTel1|scaffold_310965 (85034-85166) | |
| 777-904, gnl|fr1|chrUn (131284294-131284162) | |
| 777-904, gnl|galGal2|chr26 (2120310-2120442) | |
| 777-904, gnl|hg17|chr1 (112954348-112954480) | |
| 777-904, gnl|Hg17|chr1 (112954347-112954474) | |
| 777-904, gnl|loxAfr1|scaffold_5140 (4830-4698) | |
| 777-904, gnl|mm7|chr3 (104588966-104588834) | |
| 777-904, gnl|Mm7|chr3 (104588965-104588838) | |
| 777-904, gnl|monDom2|scaffold_0 (2571291-2571159) | |
| 777-904, gnl|oryCun1|scaffold_75148 (347-215) | |
| 777-904, gnl|panTro1|chr1 (109304531-109304399) | |
| 777-904, gnl|rheMac2|chr1 (115689008-115689140) | |
| 777-904, gnl|rn3|chr2 (200018389-200018257) | |
| 777-904, gnl|tetNig1|chr11 (7570240-7570373) | |
| 995-1116, gnl|bosTau2|chr3 (27405846-27405967) | |
| 995-1116, gnl|Hg17|chr1 (112954884-112955005) | |
| 995-1116, gnl|Mm7|chr3 (104588423-104588302) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| nje (0.66368) | |
| cov (0.660764) | |
| lnt (0.569233) | |
| cag (0.453583) | |
| amn (0.417711) | |
| cly (0.361925) | |
| mas (0.210305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.66368) | |
| cov (0.660764) | |
| lnt (0.569233) | |
| cag (0.453583) | |
| amn (0.417711) | |
| cly (0.361925) | |
| mas (0.210305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| csp (0.161186) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| pla (0.133672) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| eje (0.0988338) |