Non-Coding RNA Search

Ss1.1-Pig4-TMW8031N11.5.5

Sequence:


               
               TCCAGCGCCCACCCCAAAGGCACGTGGGCTGGGTGAGGACTGCGGGTCCCGTCTTCTTCT
ACCTCTGGTCCGTCTCCTCCCGTCTGACCGTTTCTGGCTCACAGGCTGTGTGTTCTCACA
AGGGCACAGCCCTTCACAGTTTACACAGGCCTCGGAGTCTGCTGGCAGCCTGAGAGGTAG
GCAGCGCAGGGCTGGTTTCACAGAAGGCTTGGGAAGTGAGGCGTCCGGGTGAGGAGGCGC
TGCTGGGGCGAGCTGGGGGCAGGGCTTGGGGTCCCCCCGCATGCACAGCAGCCCCGGCTG
TGCTGTCAGCTCCTCAGCCAGTTGGTGTCTTTGTCCAGTGTGGAAAAGCGGATCAGCTTC
AGGCTGGGGGGCTGGGGCCTGCGGTCATCCCAGAGGTACTCGGGGGACAGCACCTTGGAG
GGCTTGTGGGAGATGAAGCGGCGGTTCAGGTGGCTCTCCTCCTGCCAGGCCGCCATGATG
CCATTGGCCTTGTCCGCCAGGATGCCCATGTGGCAGCCCCGGGTGAACTCGTACACCCTG
GCCACCCGCCCCCCGAAGACCGCCCCACCATAATAGAAGTCCCCCTCGCTGTCCGCCACG
AAGGCGGTAGAAACATGCCGGCGCTCGTAGGGGAACTGCTGGCGGGGCGCGGCGAAGTAG
CCCGGGTGAATGGCAGCCACCAGGTCCCCCAAGGTCTCAGGGCCCCATGGGTTCCGGAAC
ACCATGTCCACGCTGAGGCAGAAGAGGTAGTCGACCTCCCGGTGCGCCCTGGCGGCAATG
TGCTGGCTGATGGCCTCCATCCGGCGTGTGGAGACCTCCTCCCAGCGGGAGGGTCTCCGG
ATGGCGATGACGCTGAGGAGGCGGCCCGGGCCCAGCGGGACCCCAGGAACGGCCCCGGGG
TCGCTGGTAAAGATGTAGTAGTGCACCCGGTAGCCCTGCATGAAGAAGCGCTCGGCCGAC
TCCAGGAAGCGCTGGACGAACTGGGTGTACTTCCCCACGGCAAACACCGTGAGTCCGATG
GTCAGGTTCAGTGGCTGGTAGATGTGATGCAGAAGCTCAGGGTCGAAGGTGCCCTCGGAG
ACGATGGGTGCCAACCAGGATGTGAGCGTCAGGAGCTCTGAGGGCTTTGGCTCAAGCAGC
TTGGGCTGAGGGTACTGGGACTGTGCCACGGGCTGGAATGGCTTCACCCCCTTGTACTGG
AGCTTCATGTTGAAGATCTCAGGGCAGGGGAGGTAATAGGGGATATAGACCGGCGGCGGC
ACGTTCTCCACATACAGCCAAAGGGAGCAGAGGGCCACGCCCACCAGCAGGCCGAACCCC
AGGCCCAGGGCTAGTCTGCGGCAGCGCATCTCTGGGTGCAGCGTCTGAGCCTGAGCACCT
GCAGAGCCTGGGTGTGACTTGGCGGATCCGCCCACCTCTCTCAGGGCCGTCAGGCTCTGA
GCTTGTGTCTTCGGGGTCCTGGGGAGACCCGAAGCCTGCAGCCGTGCCCCAAGGACCGGT
CCCCTGCCTTGGCTCTCAGGTCTCCCTCCCAAACTCCTGCGGCGAGCGAAGGGCGGCCAT
CCTCCGGACCAGGGCAACAGCGCTTGGGCTGATCCCTTGCGGTCGGACCAGAGTAGACAG
ACGGAGGGCGCACCTCGGCCAGGAAATCAGGGACTCGGCTGGCCTGGGGTCGGGCGAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCGCCCACCCCAAAGGCACGTGGGCTGGGTGAGGACTGCGGGTCCCGTCTTCTTCT
ACCTCTGGTCCGTCTCCTCCCGTCTGACCGTTTCTGGCTCACAGGCTGTGTGTTCTCACA
AGGGCACAGCCCTTCACAGTTTACACAGGCCTCGGAGTCTGCTGGCAGCCTGAGAGGTAG
GCAGCGCAGGGCTGGTTTCACAGAAGGCTTGGGAAGTGAGGCGTCCGGGTGAGGAGGCGC
TGCTGGGGCGAGCTGGGGGCAGGGCTTGGGGTCCCCCCGCATGCACAGCAGCCCCGGCTG
TGCTGTCAGCTCCTCAGCCAGTTGGTGTCTTTGTCCAGTGTGGAAAAGCGGATCAGCTTC
AGGCTGGGGGGCTGGGGCCTGCGGTCATCCCAGAGGTACTCGGGGGACAGCACCTTGGAG
GGCTTGTGGGAGATGAAGCGGCGGTTCAGGTGGCTCTCCTCCTGCCAGGCCGCCATGATG
CCATTGGCCTTGTCCGCCAGGATGCCCATGTGGCAGCCCCGGGTGAACTCGTACACCCTG
GCCACCCGCCCCCCGAAGACCGCCCCACCATAATAGAAGTCCCCCTCGCTGTCCGCCACG
AAGGCGGTAGAAACATGCCGGCGCTCGTAGGGGAACTGCTGGCGGGGCGCGGCGAAGTAG
CCCGGGTGAATGGCAGCCACCAGGTCCCCCAAGGTCTCAGGGCCCCATGGGTTCCGGAAC
ACCATGTCCACGCTGAGGCAGAAGAGGTAGTCGACCTCCCGGTGCGCCCTGGCGGCAATG
TGCTGGCTGATGGCCTCCATCCGGCGTGTGGAGACCTCCTCCCAGCGGGAGGGTCTCCGG
ATGGCGATGACGCTGAGGAGGCGGCCCGGGCCCAGCGGGACCCCAGGAACGGCCCCGGGG
TCGCTGGTAAAGATGTAGTAGTGCACCCGGTAGCCCTGCATGAAGAAGCGCTCGGCCGAC
TCCAGGAAGCGCTGGACGAACTGGGTGTACTTCCCCACGGCAAACACCGTGAGTCCGATG
GTCAGGTTCAGTGGCTGGTAGATGTGATGCAGAAGCTCAGGGTCGAAGGTGCCCTCGGAG
ACGATGGGTGCCAACCAGGATGTGAGCGTCAGGAGCTCTGAGGGCTTTGGCTCAAGCAGC
TTGGGCTGAGGGTACTGGGACTGTGCCACGGGCTGGAATGGCTTCACCCCCTTGTACTGG
AGCTTCATGTTGAAGATCTCAGGGCAGGGGAGGTAATAGGGGATATAGACCGGCGGCGGC
ACGTTCTCCACATACAGCCAAAGGGAGCAGAGGGCCACGCCCACCAGCAGGCCGAACCCC
AGGCCCAGGGCTAGTCTGCGGCAGCGCATCTCTGGGTGCAGCGTCTGAGCCTGAGCACCT
GCAGAGCCTGGGTGTGACTTGGCGGATCCGCCCACCTCTCTCAGGGCCGTCAGGCTCTGA
GCTTGTGTCTTCGGGGTCCTGGGGAGACCCGAAGCCTGCAGCCGTGCCCCAAGGACCGGT
CCCCTGCCTTGGCTCTCAGGTCTCCCTCCCAAACTCCTGCGGCGAGCGAAGGGCGGCCAT
CCTCCGGACCAGGGCAACAGCGCTTGGGCTGATCCCTTGCGGTCGGACCAGAGTAGACAG
ACGGAGGGCGCACCTCGGCCAGGAAATCAGGGACTCGGCTGGCCTGGGGTCGGGCGAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32484985|ref|NP_068836.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32484985|ref|NP_068836.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               291-409, - strand, RNAz p=0.736448
               

               
               530-649, + strand, RNAz p=0.684787

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               291-409, - strand, RNAz p=0.736448
               

               
               530-649, + strand, RNAz p=0.684787

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR622726, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR622726, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               174-990, gnl|bosTau2|chr11 (85616354-85617162)
               

               
               174-990, gnl|Hg17|chr9 (133058428-133059202)
               

               
               174-990, gnl|Mm7|chr2 (28512722-28512022)
               


               
               1278-1469, gnl|bosTau2|chr11 (85624930-85625119)
               

               
               1278-1469, gnl|canFam2|chr9 (54616257-54616037)
               

               
               1278-1469, gnl|dasNov1|scaffold_92863 (3477-3260)
               

               
               1278-1469, gnl|hg17|chr9 (133067265-133067489)
               

               
               1278-1469, gnl|Hg17|chr9 (133067282-133067474)
               

               
               1278-1469, gnl|loxAfr1|scaffold_57598 (7767-7975)
               

               
               1278-1469, gnl|mm7|chr2 (28505167-28504970)
               

               
               1278-1469, gnl|Mm7|chr2 (28505148-28504979)
               

               
               1278-1469, gnl|panTro1|chr11 (117951773-117951997)
               

               
               1278-1469, gnl|rheMac2|chr15 (5468707-5468486)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               174-990, gnl|bosTau2|chr11 (85616354-85617162)
               

               
               174-990, gnl|Hg17|chr9 (133058428-133059202)
               

               
               174-990, gnl|Mm7|chr2 (28512722-28512022)
               


               
               1278-1469, gnl|bosTau2|chr11 (85624930-85625119)
               

               
               1278-1469, gnl|canFam2|chr9 (54616257-54616037)
               

               
               1278-1469, gnl|dasNov1|scaffold_92863 (3477-3260)
               

               
               1278-1469, gnl|hg17|chr9 (133067265-133067489)
               

               
               1278-1469, gnl|Hg17|chr9 (133067282-133067474)
               

               
               1278-1469, gnl|loxAfr1|scaffold_57598 (7767-7975)
               

               
               1278-1469, gnl|mm7|chr2 (28505167-28504970)
               

               
               1278-1469, gnl|Mm7|chr2 (28505148-28504979)
               

               
               1278-1469, gnl|panTro1|chr11 (117951773-117951997)
               

               
               1278-1469, gnl|rheMac2|chr15 (5468707-5468486)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	291-409, - strand, RNAz p=0.736448
	530-649, + strand, RNAz p=0.684787

	174-990, gnl\|bosTau2\|chr11 (85616354-85617162)
	174-990, gnl\|Hg17\|chr9 (133058428-133059202)
	174-990, gnl\|Mm7\|chr2 (28512722-28512022)

	1278-1469, gnl\|bosTau2\|chr11 (85624930-85625119)
	1278-1469, gnl\|canFam2\|chr9 (54616257-54616037)
	1278-1469, gnl\|dasNov1\|scaffold_92863 (3477-3260)
	1278-1469, gnl\|hg17\|chr9 (133067265-133067489)
	1278-1469, gnl\|Hg17\|chr9 (133067282-133067474)
	1278-1469, gnl\|loxAfr1\|scaffold_57598 (7767-7975)
	1278-1469, gnl\|mm7\|chr2 (28505167-28504970)
	1278-1469, gnl\|Mm7\|chr2 (28505148-28504979)
	1278-1469, gnl\|panTro1\|chr11 (117951773-117951997)
	1278-1469, gnl\|rheMac2\|chr15 (5468707-5468486)