Non-Coding RNA Search

Ss1.1-Pig4-TMW8031N20.3

Sequence:


               
               TTTTTTTTTTTTTAAATCTGGGGGTAAAGGTAGTGGGAGGGTGGAACAGAAACAAACCAT
TGTTTCTAGTTCATTATTAATACTAGCTCATTCTTGGATATTGTTGCTTAGTAGTTAATA
CAGAAGACAAATCTAGACCCCAATAATAAGAATGGGACTAGAAATGAATTTCAGGATATT
AACAAACAAAACATTTATGTGGTGTTGATTTCCAGTTGTACAATGGCTATTGCATTTGTC
ACTCTGTCTCCCTTTTTCTGCCCTCGCTCTTTTATGTATGTATCTAGTTTGAGGAAATGT
GCATTTGTGGTCAGTCCTTTTAAAAGGACTTAATGCATTTATTACTCTTTTGTAAAAAAT
AATACCCACTGCTTATATGGGCATACAAATGCTACCCTATTTTAAATGTAGGTGGCGTAT
GTGTTCGTGTTTTATTGTATTCAGAGCCATTGTGCAATAAGCAGTCCAGAACATTGAAAC
TCAAGCAGGTAAAGCACCCTTAGTTTCTAGAATTATCTTTAAAAAACTCCTTTATTGCTA
TGTCTTCCACAAGTGTTTGGTAGTCTTTGCTGGCTTTGTAGACTACCCTGTAAGAATTTG
TAGAGATAGGTGAAGAAGGAAAGTATAACAGAAAAGAAATGACTACTTGAGATGGCAACT
GCTGAGGGTCTCAGTCTCCTTTCCTCCCAGCATGAGCATTGATCATACATGTTTTGATTT
TCTGTGATTGGGAATTTTGTTTTAACTTGTGGTGGGGAGGTTTCAGGGAAACAGGAAGTT
CATGTACATCTGAAAATATGAAATGTTAAAGAAATGAATTTTTCTCTTTTAACTTGAATA
GTAAGCAAGAACTTTTTCTATATACCCTTCTGCTGCAGCAGAGAAATAAACTGGTAGGTG
GCAGCAGAAGAGGAATTCTTCAGATTGATGGCTGCTGACAAAATTTGACAGACCATGTCA
AGCAGGAGGGGCAAAAATGGAAACAGGACTAAGATTCCTAAATCTTGACTCTGCATGGTT
CTTTTGATCTCACAGAATGGATGAAGATAGATTTGACCATATGTTTTTTCAAATGGAGGA
TAGAAATACACAGAACAAGGAAGCAGTAGCTCTAACCTGTTTAATTCAGTGTGTTTTCTA
AAATAAAGACACCAGACTGGAAATGAAGTATCATGGAGTATGATTTGTTCTCTTTGCAGC
TATTTCTACCCACTCCATTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTAAATCTGGGGGTAAAGGTAGTGGGAGGGTGGAACAGAAACAAACCAT
TGTTTCTAGTTCATTATTAATACTAGCTCATTCTTGGATATTGTTGCTTAGTAGTTAATA
CAGAAGACAAATCTAGACCCCAATAATAAGAATGGGACTAGAAATGAATTTCAGGATATT
AACAAACAAAACATTTATGTGGTGTTGATTTCCAGTTGTACAATGGCTATTGCATTTGTC
ACTCTGTCTCCCTTTTTCTGCCCTCGCTCTTTTATGTATGTATCTAGTTTGAGGAAATGT
GCATTTGTGGTCAGTCCTTTTAAAAGGACTTAATGCATTTATTACTCTTTTGTAAAAAAT
AATACCCACTGCTTATATGGGCATACAAATGCTACCCTATTTTAAATGTAGGTGGCGTAT
GTGTTCGTGTTTTATTGTATTCAGAGCCATTGTGCAATAAGCAGTCCAGAACATTGAAAC
TCAAGCAGGTAAAGCACCCTTAGTTTCTAGAATTATCTTTAAAAAACTCCTTTATTGCTA
TGTCTTCCACAAGTGTTTGGTAGTCTTTGCTGGCTTTGTAGACTACCCTGTAAGAATTTG
TAGAGATAGGTGAAGAAGGAAAGTATAACAGAAAAGAAATGACTACTTGAGATGGCAACT
GCTGAGGGTCTCAGTCTCCTTTCCTCCCAGCATGAGCATTGATCATACATGTTTTGATTT
TCTGTGATTGGGAATTTTGTTTTAACTTGTGGTGGGGAGGTTTCAGGGAAACAGGAAGTT
CATGTACATCTGAAAATATGAAATGTTAAAGAAATGAATTTTTCTCTTTTAACTTGAATA
GTAAGCAAGAACTTTTTCTATATACCCTTCTGCTGCAGCAGAGAAATAAACTGGTAGGTG
GCAGCAGAAGAGGAATTCTTCAGATTGATGGCTGCTGACAAAATTTGACAGACCATGTCA
AGCAGGAGGGGCAAAAATGGAAACAGGACTAAGATTCCTAAATCTTGACTCTGCATGGTT
CTTTTGATCTCACAGAATGGATGAAGATAGATTTGACCATATGTTTTTTCAAATGGAGGA
TAGAAATACACAGAACAAGGAAGCAGTAGCTCTAACCTGTTTAATTCAGTGTGTTTTCTA
AAATAAAGACACCAGACTGGAAATGAAGTATCATGGAGTATGATTTGTTCTCTTTGCAGC
TATTTCTACCCACTCCATTTTGAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               312-498, + strand, RNAz p=0.950794
               

               
               796-940, + strand, RNAz p=0.89641

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-498, + strand, RNAz p=0.950794
               

               
               796-940, + strand, RNAz p=0.89641

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               887-961, + strand, RNAmicro p=0.974988

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               887-961, + strand, RNAmicro p=0.974988

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020734, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020734, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               10-569, gnl|bosTau2|chr5 (59675340-59674755)
               

               
               10-569, gnl|Hg17|chr12 (8823499-8824063)
               

               
               10-569, gnl|Mm7|chr6 (122487894-122487415)
               


               
               596-940, gnl|bosTau2|chr5 (59674694-59674335)
               

               
               596-940, gnl|Hg17|chr12 (8824125-8824504)
               

               
               596-940, gnl|Mm7|chr6 (122487345-122486977)
               


               
               1017-1222, gnl|bosTau2|chr5 (59671923-59671711)
               

               
               1017-1222, gnl|Hg17|chr12 (8826774-8826982)
               

               
               1017-1222, gnl|Mm7|chr6 (122484477-122484292)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-569, gnl|bosTau2|chr5 (59675340-59674755)
               

               
               10-569, gnl|Hg17|chr12 (8823499-8824063)
               

               
               10-569, gnl|Mm7|chr6 (122487894-122487415)
               


               
               596-940, gnl|bosTau2|chr5 (59674694-59674335)
               

               
               596-940, gnl|Hg17|chr12 (8824125-8824504)
               

               
               596-940, gnl|Mm7|chr6 (122487345-122486977)
               


               
               1017-1222, gnl|bosTau2|chr5 (59671923-59671711)
               

               
               1017-1222, gnl|Hg17|chr12 (8826774-8826982)
               

               
               1017-1222, gnl|Mm7|chr6 (122484477-122484292)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ebs (0.118301)

	312-498, + strand, RNAz p=0.950794
	796-940, + strand, RNAz p=0.89641

	10-569, gnl\|bosTau2\|chr5 (59675340-59674755)
	10-569, gnl\|Hg17\|chr12 (8823499-8824063)
	10-569, gnl\|Mm7\|chr6 (122487894-122487415)

	596-940, gnl\|bosTau2\|chr5 (59674694-59674335)
	596-940, gnl\|Hg17\|chr12 (8824125-8824504)
	596-940, gnl\|Mm7\|chr6 (122487345-122486977)

	1017-1222, gnl\|bosTau2\|chr5 (59671923-59671711)
	1017-1222, gnl\|Hg17\|chr12 (8826774-8826982)
	1017-1222, gnl\|Mm7\|chr6 (122484477-122484292)

	ecc (0.23007)
	tes (0.207814)
	gul (0.177588)
	fbs (0.175346)
	fat (0.147427)
	ste (0.135208)
	lyg (0.133103)
	ebs (0.118301)