Non-Coding RNA Search

Ss1.1-Pig4-TMW8031N21.5

Sequence:


               
               TGGAGATGGCGCCCGCGGGGGCCCGGAGGACCCGGCGCGCGGTCCGGTTCGCGCCGCCGG
CTGAGAACTGGTGGTGGGATCGGCTGGCGCCGAGCGGCTCCGGATACCATTTGCTGCAAT
CGGACAGCATGCTGCTGGTGATTCCAGGCCCGGGGCCCGCCCGTCCTCGCGGGCAGAGGC
GCGCTGCCCGCCGCGCTAAGCGGCTGCGACCCCCAGGGTCCCGCGCCGCCGAGACCAAGG
CCAAGCCCGGGGCCTCGCCTGCGCCCGCGCCCGCCCCCGCGCCCGCGCCGCAGCAGGTGC
CCGACCCGGGCTGGGGCGACCGCATTCCCTTGGAAATCCTGTTGCAGATTTTCGGCCTGC
TGGTGGTGGACGGGCCCATGCCCTTCCTCGGCAGGGCTGCACGTGTGTGCCGCCGCTGGC
ATGAGGCCGCCTCCCATCCCGTTCTCTGGCACACCCTGACCCTCTCACCCCCGCTGGCTG
GCCGCCGGGCCAAGAGCGGAGCCAAGGCGGAGAAGAAGCTCCTGGCTTCCCTGCAGTGGC
TTATGCCAAATCGGTTCTCACAGCTCCAGAGGCTGACTCTCATCCACTGGAAGTCCCAGG
TGCACTCTGTGTTGAAGGCTTTCTGACTGCCACGGTGTGACCCCTGACACTCTGATCATG
CTAGCCAGAGCCTGCCCCCAGCTCCACAGCCTGGATTTACAGCACTCCATGGTGGAGTCC
ACGGCTGTTGTAAGCTTCTTGGAGGAGGCGGGACCCCGGATGCGGAAGCTGTGGCTGACC
TACGGCTCTCAGACAACAGCTATCTTGGGTGCACTGCTGGGCAGCTGCCCACAGCTCCAG
GTCCTGGAGCCTGGGTCTTGCTCCCAGGTGCTGCGGTTGCTGAACCTGATGTGGCTGCCC
AAGCCTTCCGGACGAGCTGTGACTCCTGGCCCAGGCTTCCCCAGCCTTGAGGAGCTCTGC
CTCGCCAGCTCCACCTGCAACTTTGTGACCAATGAGGTCCTGGATCGCCTGCTCCATGGC
TCCCCTAACCTGCGCTTGCTGGATCTTCGTGGCTGTCTTCGAGTTACACCTGCTGGCCTG
TGTGAGCTGCCATGTCAGGAGCTGGAGGAGCTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGATGGCGCCCGCGGGGGCCCGGAGGACCCGGCGCGCGGTCCGGTTCGCGCCGCCGG
CTGAGAACTGGTGGTGGGATCGGCTGGCGCCGAGCGGCTCCGGATACCATTTGCTGCAAT
CGGACAGCATGCTGCTGGTGATTCCAGGCCCGGGGCCCGCCCGTCCTCGCGGGCAGAGGC
GCGCTGCCCGCCGCGCTAAGCGGCTGCGACCCCCAGGGTCCCGCGCCGCCGAGACCAAGG
CCAAGCCCGGGGCCTCGCCTGCGCCCGCGCCCGCCCCCGCGCCCGCGCCGCAGCAGGTGC
CCGACCCGGGCTGGGGCGACCGCATTCCCTTGGAAATCCTGTTGCAGATTTTCGGCCTGC
TGGTGGTGGACGGGCCCATGCCCTTCCTCGGCAGGGCTGCACGTGTGTGCCGCCGCTGGC
ATGAGGCCGCCTCCCATCCCGTTCTCTGGCACACCCTGACCCTCTCACCCCCGCTGGCTG
GCCGCCGGGCCAAGAGCGGAGCCAAGGCGGAGAAGAAGCTCCTGGCTTCCCTGCAGTGGC
TTATGCCAAATCGGTTCTCACAGCTCCAGAGGCTGACTCTCATCCACTGGAAGTCCCAGG
TGCACTCTGTGTTGAAGGCTTTCTGACTGCCACGGTGTGACCCCTGACACTCTGATCATG
CTAGCCAGAGCCTGCCCCCAGCTCCACAGCCTGGATTTACAGCACTCCATGGTGGAGTCC
ACGGCTGTTGTAAGCTTCTTGGAGGAGGCGGGACCCCGGATGCGGAAGCTGTGGCTGACC
TACGGCTCTCAGACAACAGCTATCTTGGGTGCACTGCTGGGCAGCTGCCCACAGCTCCAG
GTCCTGGAGCCTGGGTCTTGCTCCCAGGTGCTGCGGTTGCTGAACCTGATGTGGCTGCCC
AAGCCTTCCGGACGAGCTGTGACTCCTGGCCCAGGCTTCCCCAGCCTTGAGGAGCTCTGC
CTCGCCAGCTCCACCTGCAACTTTGTGACCAATGAGGTCCTGGATCGCCTGCTCCATGGC
TCCCCTAACCTGCGCTTGCTGGATCTTCGTGGCTGTCTTCGAGTTACACCTGCTGGCCTG
TGTGAGCTGCCATGTCAGGAGCTGGAGGAGCTTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               FBXL6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               FBXL6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               864-983, - strand, RNAz p=0.505523

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               864-983, - strand, RNAz p=0.505523

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               30-395, gnl|bosTau2|chr14 (3445020-3445360)
               

               
               30-395, gnl|Hg17|chr8 (145552874-145552499)
               

               
               30-395, gnl|Mm7|chr15 (76621220-76620877)
               


               
               844-1099, gnl|bosTau2|chr14 (3446854-3447109)
               

               
               844-1099, gnl|Hg17|chr8 (145551023-145550768)
               

               
               844-1099, gnl|Mm7|chr15 (76619401-76619126)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-395, gnl|bosTau2|chr14 (3445020-3445360)
               

               
               30-395, gnl|Hg17|chr8 (145552874-145552499)
               

               
               30-395, gnl|Mm7|chr15 (76621220-76620877)
               


               
               844-1099, gnl|bosTau2|chr14 (3446854-3447109)
               

               
               844-1099, gnl|Hg17|chr8 (145551023-145550768)
               

               
               844-1099, gnl|Mm7|chr15 (76619401-76619126)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)

	30-395, gnl\|bosTau2\|chr14 (3445020-3445360)
	30-395, gnl\|Hg17\|chr8 (145552874-145552499)
	30-395, gnl\|Mm7\|chr15 (76621220-76620877)

	844-1099, gnl\|bosTau2\|chr14 (3446854-3447109)
	844-1099, gnl\|Hg17\|chr8 (145551023-145550768)
	844-1099, gnl\|Mm7\|chr15 (76619401-76619126)