Ss1.1-Pig4-TMW8031O05.3
|
GAGGCAGGAGCAGGAAGAAGCCCGGCGGCAGCTGGAGGAGCAGGCCCGGGCCCAGAAGCC
CACGCCGCCCGCGTCCCCCACGCCTCAGCCCGCTCCGGAGAGGCCGCCGTCGAGCCCCGT
CTATGAGGACGCAGCTCCCCTTCAGGCCGAGCCGAGCTACAGGGCCCCCGAGAGCACACA
CGAGCCTGAGCCGGTGTACAGCGTGGAGGCTGCCGGCTACCGAGAGGCCTGCGCGCCGGA
GGCCGTCTACGAGAGCACGGAGGCCCCGGGCCACTACCCAGCAGAGGAAGGTGCCTATGA
CGAGTACGAGAACGACCTTGGAATCACGGCCATCGCCCTGTACGACTACCAGGCTGCGGG
CGACGACGAGATCTCCTTCGACCCCGACGACATCATCACCAACATCGAGATGATCGACGA
CGGCTGGTGGCGCGGGCTCTGCAAGGGCAGGTACGGGCTCTTCCCCGCCAACTACGTGGA
GCTGCGGCAGTAGGGCGCCCGCGCCGGCCGCGCCTGCCTCCTGCTGGTTCTGCGGGGGGC
CGACCCCAACGGCTTTTACATTTAATACTTTTGCTGATGCTTTTGGAAATGTTTACGCCA
CAGAATTTGCTAATATATTGTAATCATGCTCCTCGGAGGGTCGGTAATTGTTTTTATGCA
TTTAAGGTATTTTCTTTCTTTGCCAAATCGACTGTCGCGGGGAGTCCTTGGGGGACCTTG
GGGACCGGGTCGTCTCCGCCCATTGTCGCTGGGGCAGGGGGCACATCTGGGGAGTCTCTC
CTGTCCCTGTGGCTGGGAACGGGTAGGGGCCTGTGGAAATGACCACAGGGACAGCCGCTC
CGAGGTGGGGACCGGCCTCCCCGCCCCGGAACCCCTCGGGCTCCAACGGTCTCTGTCATT
CTCTCCGCCTGAGCCCCGGCCCCTCGCTGCAGTGTCACCCGGGCCCTTAACGACTGCCCT
CCCTGCAGTCTCCCGCCCCCTGGGTCCGAAGGCCTGGCCGGCACTCGCTGGTGGCCCCTT
GTCACCCGGCCAGTGCCGGCCCTGGGAGGACAGCCTCTCCGCTGCGGGAAGGCGGGTCCC
TTCCCTGTGGTGACCTCCAGAAACGCTTCCCATCAAGGGAGCTGTGCTCTTCTGCCAAAA
TACCAAGTTAAGAGACAACCAGATTTGCTCGATTGACCTGAGAACTGGGAGCGAACAAGG
GGGAACGCTCTGGCCCGGAGGCTCCGTGGCCCCTCTGCGTGGTCGCTGCGGGAGCCCGTC
CCCGAGGGACCCGGAGGCCCGCGGGCAGCGCCCTTCCCGGATCCCGGATCCCGTGGGCGG
TCTCTGGGGTTGGGTGGCAGTGACCGAGGGACGGCTTTTCTTCCCTGAAGTGCATTTTCA
CAGATAGGTCGGGTTTTATATGCAATTATTGTATCTAAATTTCTGTAGCACACCTCATAG
GTATGGTTTTTTTAAATTAAATGTTCCAAATAAACTTTTTTTGATCCAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GAGGCAGGAGCAGGAAGAAGCCCGGCGGCAGCTGGAGGAGCAGGCCCGGGCCCAGAAGCC
CACGCCGCCCGCGTCCCCCACGCCTCAGCCCGCTCCGGAGAGGCCGCCGTCGAGCCCCGT
CTATGAGGACGCAGCTCCCCTTCAGGCCGAGCCGAGCTACAGGGCCCCCGAGAGCACACA
CGAGCCTGAGCCGGTGTACAGCGTGGAGGCTGCCGGCTACCGAGAGGCCTGCGCGCCGGA
GGCCGTCTACGAGAGCACGGAGGCCCCGGGCCACTACCCAGCAGAGGAAGGTGCCTATGA
CGAGTACGAGAACGACCTTGGAATCACGGCCATCGCCCTGTACGACTACCAGGCTGCGGG
CGACGACGAGATCTCCTTCGACCCCGACGACATCATCACCAACATCGAGATGATCGACGA
CGGCTGGTGGCGCGGGCTCTGCAAGGGCAGGTACGGGCTCTTCCCCGCCAACTACGTGGA
GCTGCGGCAGTAGGGCGCCCGCGCCGGCCGCGCCTGCCTCCTGCTGGTTCTGCGGGGGGC
CGACCCCAACGGCTTTTACATTTAATACTTTTGCTGATGCTTTTGGAAATGTTTACGCCA
CAGAATTTGCTAATATATTGTAATCATGCTCCTCGGAGGGTCGGTAATTGTTTTTATGCA
TTTAAGGTATTTTCTTTCTTTGCCAAATCGACTGTCGCGGGGAGTCCTTGGGGGACCTTG
GGGACCGGGTCGTCTCCGCCCATTGTCGCTGGGGCAGGGGGCACATCTGGGGAGTCTCTC
CTGTCCCTGTGGCTGGGAACGGGTAGGGGCCTGTGGAAATGACCACAGGGACAGCCGCTC
CGAGGTGGGGACCGGCCTCCCCGCCCCGGAACCCCTCGGGCTCCAACGGTCTCTGTCATT
CTCTCCGCCTGAGCCCCGGCCCCTCGCTGCAGTGTCACCCGGGCCCTTAACGACTGCCCT
CCCTGCAGTCTCCCGCCCCCTGGGTCCGAAGGCCTGGCCGGCACTCGCTGGTGGCCCCTT
GTCACCCGGCCAGTGCCGGCCCTGGGAGGACAGCCTCTCCGCTGCGGGAAGGCGGGTCCC
TTCCCTGTGGTGACCTCCAGAAACGCTTCCCATCAAGGGAGCTGTGCTCTTCTGCCAAAA
TACCAAGTTAAGAGACAACCAGATTTGCTCGATTGACCTGAGAACTGGGAGCGAACAAGG
GGGAACGCTCTGGCCCGGAGGCTCCGTGGCCCCTCTGCGTGGTCGCTGCGGGAGCCCGTC
CCCGAGGGACCCGGAGGCCCGCGGGCAGCGCCCTTCCCGGATCCCGGATCCCGTGGGCGG
TCTCTGGGGTTGGGTGGCAGTGACCGAGGGACGGCTTTTCTTCCCTGAAGTGCATTTTCA
CAGATAGGTCGGGTTTTATATGCAATTATTGTATCTAAATTTCTGTAGCACACCTCATAG
GTATGGTTTTTTTAAATTAAATGTTCCAAATAAACTTTTTTTGATCCAAAAAAAAAAAAA
AAAAAAAAAAAA
|
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182-296, gnl|bosTau2|chr29 (42353993-42354106) |
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182-296, gnl|Hg17|chr11 (69956909-69957040) |
|
182-296, gnl|Mm7|chr7 (140864133-140863968) |
| |
|
353-730, gnl|bosTau2|chr29 (42355566-42355957) |
|
353-730, gnl|Hg17|chr11 (69958776-69959246) |
|
353-730, gnl|Mm7|chr7 (140862350-140861894) |
| |
|
1063-1210, gnl|bosTau2|chr29 (42356189-42356340) |
|
1063-1210, gnl|Hg17|chr11 (69959594-69960007) |
| |
|
1233-1488, gnl|bosTau2|chr29 (42356336-42356597) |
|
1233-1488, gnl|Hg17|chr11 (69959966-69960329) |
|
1233-1488, gnl|Mm7|chr7 (140861278-140860979) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
182-296, gnl|bosTau2|chr29 (42353993-42354106) |
|
182-296, gnl|Hg17|chr11 (69956909-69957040) |
|
182-296, gnl|Mm7|chr7 (140864133-140863968) |
| |
|
353-730, gnl|bosTau2|chr29 (42355566-42355957) |
|
353-730, gnl|Hg17|chr11 (69958776-69959246) |
|
353-730, gnl|Mm7|chr7 (140862350-140861894) |
| |
|
1063-1210, gnl|bosTau2|chr29 (42356189-42356340) |
|
1063-1210, gnl|Hg17|chr11 (69959594-69960007) |
| |
|
1233-1488, gnl|bosTau2|chr29 (42356336-42356597) |
|
1233-1488, gnl|Hg17|chr11 (69959966-69960329) |
|
1233-1488, gnl|Mm7|chr7 (140861278-140860979) |
|
nlu (0.383362) |
|
ute (0.265569) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
jca (0.22792) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
ill (0.175593) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cli (0.152812) |
|
cag (0.151194) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
eep (0.122564) |
|
eru (0.120048) |
|
nlu (0.383362) |
|
ute (0.265569) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
jca (0.22792) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
ill (0.175593) |
|
nje (0.16592) |
|
cje (0.165235) |
|
cli (0.152812) |
|
cag (0.151194) |
|
pla (0.133672) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
eep (0.122564) |
|
eru (0.120048) |
