Ss1.1-Pig4-TMW8031O17.3
|
GTGGCCAAAAGTCATGCAAGATCATAAATCTTATAGAATAACATCACCGATGATACTGCA
TCTTCCTGGAATAAGGACATACTGAAATGTAAGTTAAATGTAGATGGGGTTTGTGGTCTT
AGATGGACAGCATTAGAGAAATTGTTAGAACCCTCCCCCCCCCCCCGGTCCTGGTAGTTA
GTACATCATTGGGTGAGAACTAGGAGCAGTGCTTTTCTCCAACGCTTTCAAAGCTCTTTG
TTTACAGAATAAAATTACAAATAAAACCAACTTGATTTTATTTGACCAGAAGGAAGCTGG
TTAAGCTGGCCTTTTTACATAGGAGTACAGAATGTATTTCATAGGAAATGTGCTGTAAAG
TCTCAGAAAACTAAATATTTTCAAACTTAGTTTTCCCTTATAACCAAAGTTTCAACTTAG
AAGTTTAGAGAAAGAGAATGGTTGGCACATGATCCACGTATTTAATGTTAACGGTGTATT
GTAAGGGTAGTGTTTGGTTTTGAATGATAACTTAGGAGTTCTCAAAGCAAATGGGCAGCA
TAGGTCTTAAGAAACCATAAAAGAATTTCCATATAGTATTACAACCCATAGGCTTAAATC
TGGGGATTTTTAAAATATGAGAATCAGCCAAACATAAGTTAGCAAAATCAAAAACAAGTT
CTGATTGTTTTATATTTCAACAATTTTTCCTGAAGTGGTAAGCAGTTACTTTAAAACATT
TTGAAACATCAGTATCAAAAAAAAGAAAGAAAGAAGCTTGACATAGGATGCAGTGTTAGA
GTTTTTGGCACTTTATAGTAGCCTTTCTCATATTTGAAATTACGGGCTTTGCTAGCCCTA
CCTTTACTTAGAAGTTTAGTCCTACTGTGAAAAATAGGAGCGTTTTAAACATAACGCCAT
CTGTCATGGTGTATATCTGTATAAATTGTTCTCTTTGGGAGAAAAATATTATCAAATTGG
GCATATAACTTAATTATGTTCATTTAACTTTTTTTTTTTTTTTCCCAGAGAATTTGTAGA
CGTTAATATAAAGTCATTGGAACATATTTATCTGTTTTACCAGAAAGAAATCTAGGCAGA
TACTACAAAAGATTAAAAATTGTTATTCTACAAAATTTTAAATATTGTCAGATATTTTGT
AAAAAAAGAAAAAAAAAAAAAAAAGCCAAAAGGTTGCCCTCCATTTTGCTGGCAGATAAC
TTTATCTTCTTGTCTTACTTAAGGGTTTCCCCTGGTTTCTCAGTTGTTCTTTGTCCTGTT
GTTTTCAATAAGGAAAGCATTTGCTAGCATACTGTTTACTTGGATAGCATCAAAATTTTA
TTATTAACCAGTAGTCTTATAAATACTTAAAACTTCTAGTTCAGAAAGTGCAAATATTGC
TGCCCTTCTTCATGTAGAATTAAAAAAAAAATAATAGTGTAGTTTTGCTTCATTTTACAT
TGGGCTAAAAATTGTCTTAAAGGAAGTTAATTAGGAAAGAAGACGTTTTTGCTTTATTTT
TACTATTGAAGACAAATCAACATTTGGGGTTAGTTTTACATGACCAGTTATCAAATGGTC
ATAGTATGAAGTGTGCAGTTGTTCATTATTAGCAAATTATGTCTGATTTTTAAACTACTA
AGTACTAATAGTTAAGATGAAAACTGAAGAAAAATGCCAATGTGAAGTTTGTGTATAGCT
AGCCTTAAAAAACTCCATGTTTTTAGGTGATTTGTTTCCTGTTAGTTCTCTGGAGAAACA
GTGGAGATAGGACATCTCAATTCCAGATGTAAACAAAAAGTAATTTTTTTATTTCAACAT
TTAATATAGCTGTTACTATGTGGATTCTTGTGTTTTTTTCTTTCCCTTATTCAACTAATA
GAGAATAACTTTTCCCTCAAATTATTTGATCTTAGATATGTTATTTCTGTATTGGCAAAA
TGCTACTATTAAAGTGTAATTCTCAAATTTAGGTTGAATTGATGAATTTTTAAAACAAAA
CAGAAGCACTGGACATTTCTACATTGTACTGCACTTGCAGACACACACTCACTCACTCTG
GAGAATGTGGCACCGGCATTAAGAACATTGGCAGTTTTTAAAACGTTGCAAGTGAGCTAC
GTAATACTCGTTTTCAGGATCAAGTATTTTAGGCTCTCTACTTACTGTGAGAAGTTTTTT
ATATTGTAAAATTAAATAATTATATTTAAAATACTCCTTTAGAGTGTTACCTATTCAGTC
ACCAAGAAGAAAACAAATGTCTTACCACAAAAGTATTATTTGAAGCTCATCTGTGGAGAT
TCTGTTAATAGCCTTGTATCTCCTTACTTAACTTGCCCCCTCAATCACACATTTTCCTTT
CAATCTGTTACTGCCCTGTGTCGTTTTTTAAAACAGCCACCGTGAGTAAGGGCTTCTTTC
AGATAATCGCTGACGTCTTTGGCATTTAATACAATGTAAAGATAAGACAGGATACATCTG
TTTTCATTCCCGTCTATTTTGTATGAGTGCCTCATTTTGTAGTTGTGAAATTAATACAGT
ACCTTAAATGAAAATGTAGTGACCAGAAGGCCTAGAAATGACTGTTGTAGAAGCTGAAGA
ACTAGAACACTTACTTGGTAGGGCATCAGTTTTCTTTAACCCCTTAGACACTCAGGCCAA
CTTTATGTGTATATATTCTAAAAGTGCTCCCTTTTTTATGTGGTCGTTTGTTGCCTTCTG
AGTTGAGAGAACAAGATTGAATAAAAATGATAGTTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGGCCAAAAGTCATGCAAGATCATAAATCTTATAGAATAACATCACCGATGATACTGCA
TCTTCCTGGAATAAGGACATACTGAAATGTAAGTTAAATGTAGATGGGGTTTGTGGTCTT
AGATGGACAGCATTAGAGAAATTGTTAGAACCCTCCCCCCCCCCCCGGTCCTGGTAGTTA
GTACATCATTGGGTGAGAACTAGGAGCAGTGCTTTTCTCCAACGCTTTCAAAGCTCTTTG
TTTACAGAATAAAATTACAAATAAAACCAACTTGATTTTATTTGACCAGAAGGAAGCTGG
TTAAGCTGGCCTTTTTACATAGGAGTACAGAATGTATTTCATAGGAAATGTGCTGTAAAG
TCTCAGAAAACTAAATATTTTCAAACTTAGTTTTCCCTTATAACCAAAGTTTCAACTTAG
AAGTTTAGAGAAAGAGAATGGTTGGCACATGATCCACGTATTTAATGTTAACGGTGTATT
GTAAGGGTAGTGTTTGGTTTTGAATGATAACTTAGGAGTTCTCAAAGCAAATGGGCAGCA
TAGGTCTTAAGAAACCATAAAAGAATTTCCATATAGTATTACAACCCATAGGCTTAAATC
TGGGGATTTTTAAAATATGAGAATCAGCCAAACATAAGTTAGCAAAATCAAAAACAAGTT
CTGATTGTTTTATATTTCAACAATTTTTCCTGAAGTGGTAAGCAGTTACTTTAAAACATT
TTGAAACATCAGTATCAAAAAAAAGAAAGAAAGAAGCTTGACATAGGATGCAGTGTTAGA
GTTTTTGGCACTTTATAGTAGCCTTTCTCATATTTGAAATTACGGGCTTTGCTAGCCCTA
CCTTTACTTAGAAGTTTAGTCCTACTGTGAAAAATAGGAGCGTTTTAAACATAACGCCAT
CTGTCATGGTGTATATCTGTATAAATTGTTCTCTTTGGGAGAAAAATATTATCAAATTGG
GCATATAACTTAATTATGTTCATTTAACTTTTTTTTTTTTTTTCCCAGAGAATTTGTAGA
CGTTAATATAAAGTCATTGGAACATATTTATCTGTTTTACCAGAAAGAAATCTAGGCAGA
TACTACAAAAGATTAAAAATTGTTATTCTACAAAATTTTAAATATTGTCAGATATTTTGT
AAAAAAAGAAAAAAAAAAAAAAAAGCCAAAAGGTTGCCCTCCATTTTGCTGGCAGATAAC
TTTATCTTCTTGTCTTACTTAAGGGTTTCCCCTGGTTTCTCAGTTGTTCTTTGTCCTGTT
GTTTTCAATAAGGAAAGCATTTGCTAGCATACTGTTTACTTGGATAGCATCAAAATTTTA
TTATTAACCAGTAGTCTTATAAATACTTAAAACTTCTAGTTCAGAAAGTGCAAATATTGC
TGCCCTTCTTCATGTAGAATTAAAAAAAAAATAATAGTGTAGTTTTGCTTCATTTTACAT
TGGGCTAAAAATTGTCTTAAAGGAAGTTAATTAGGAAAGAAGACGTTTTTGCTTTATTTT
TACTATTGAAGACAAATCAACATTTGGGGTTAGTTTTACATGACCAGTTATCAAATGGTC
ATAGTATGAAGTGTGCAGTTGTTCATTATTAGCAAATTATGTCTGATTTTTAAACTACTA
AGTACTAATAGTTAAGATGAAAACTGAAGAAAAATGCCAATGTGAAGTTTGTGTATAGCT
AGCCTTAAAAAACTCCATGTTTTTAGGTGATTTGTTTCCTGTTAGTTCTCTGGAGAAACA
GTGGAGATAGGACATCTCAATTCCAGATGTAAACAAAAAGTAATTTTTTTATTTCAACAT
TTAATATAGCTGTTACTATGTGGATTCTTGTGTTTTTTTCTTTCCCTTATTCAACTAATA
GAGAATAACTTTTCCCTCAAATTATTTGATCTTAGATATGTTATTTCTGTATTGGCAAAA
TGCTACTATTAAAGTGTAATTCTCAAATTTAGGTTGAATTGATGAATTTTTAAAACAAAA
CAGAAGCACTGGACATTTCTACATTGTACTGCACTTGCAGACACACACTCACTCACTCTG
GAGAATGTGGCACCGGCATTAAGAACATTGGCAGTTTTTAAAACGTTGCAAGTGAGCTAC
GTAATACTCGTTTTCAGGATCAAGTATTTTAGGCTCTCTACTTACTGTGAGAAGTTTTTT
ATATTGTAAAATTAAATAATTATATTTAAAATACTCCTTTAGAGTGTTACCTATTCAGTC
ACCAAGAAGAAAACAAATGTCTTACCACAAAAGTATTATTTGAAGCTCATCTGTGGAGAT
TCTGTTAATAGCCTTGTATCTCCTTACTTAACTTGCCCCCTCAATCACACATTTTCCTTT
CAATCTGTTACTGCCCTGTGTCGTTTTTTAAAACAGCCACCGTGAGTAAGGGCTTCTTTC
AGATAATCGCTGACGTCTTTGGCATTTAATACAATGTAAAGATAAGACAGGATACATCTG
TTTTCATTCCCGTCTATTTTGTATGAGTGCCTCATTTTGTAGTTGTGAAATTAATACAGT
ACCTTAAATGAAAATGTAGTGACCAGAAGGCCTAGAAATGACTGTTGTAGAAGCTGAAGA
ACTAGAACACTTACTTGGTAGGGCATCAGTTTTCTTTAACCCCTTAGACACTCAGGCCAA
CTTTATGTGTATATATTCTAAAAGTGCTCCCTTTTTTATGTGGTCGTTTGTTGCCTTCTG
AGTTGAGAGAACAAGATTGAATAAAAATGATAGTTG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-1977, gnl|bosTau2|chr20 (37689192-37687177) |
|
1-1977, gnl|Hg17|chr5 (10487664-10490185) |
|
1-1977, gnl|Mm7|chr15 (31570493-31568774) |
| |
|
1464-1678, gnl|bosTau2|chr13 (40843832-40844044) |
|
1464-1678, gnl|Hg17|chr5 (10489659-10489876) |
|
1464-1678, gnl|Mm7|chr15 (31569257-31569042) |
| |
|
2022-2736, gnl|bosTau2|chr20 (37687162-37686466) |
|
2022-2736, gnl|canFam2|chr34 (6886838-6886320) |
|
2022-2736, gnl|dasNov1|scaffold_11845 (58439-58948) |
|
2022-2736, gnl|hg17|chr5 (10490235-10490751) |
|
2022-2736, gnl|Hg17|chr5 (10490234-10490959) |
|
2022-2736, gnl|loxAfr1|scaffold_209880 (121-551) |
|
2022-2736, gnl|mm7|chr15 (31568732-31568218) |
|
2022-2736, gnl|Mm7|chr15 (31568760-31568016) |
|
2022-2736, gnl|monDom2|scaffold_4 (30306708-30307185) |
|
2022-2736, gnl|oryCun1|scaffold_121610 (6923-7446) |
|
2022-2736, gnl|panTro1|chr4 (10893304-10893822) |
|
2022-2736, gnl|rheMac2|chr6 (10369234-10369755) |
|
2022-2736, gnl|rn3|chr2 (83490276-83489771) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1977, gnl|bosTau2|chr20 (37689192-37687177) |
|
1-1977, gnl|Hg17|chr5 (10487664-10490185) |
|
1-1977, gnl|Mm7|chr15 (31570493-31568774) |
| |
|
1464-1678, gnl|bosTau2|chr13 (40843832-40844044) |
|
1464-1678, gnl|Hg17|chr5 (10489659-10489876) |
|
1464-1678, gnl|Mm7|chr15 (31569257-31569042) |
| |
|
2022-2736, gnl|bosTau2|chr20 (37687162-37686466) |
|
2022-2736, gnl|canFam2|chr34 (6886838-6886320) |
|
2022-2736, gnl|dasNov1|scaffold_11845 (58439-58948) |
|
2022-2736, gnl|hg17|chr5 (10490235-10490751) |
|
2022-2736, gnl|Hg17|chr5 (10490234-10490959) |
|
2022-2736, gnl|loxAfr1|scaffold_209880 (121-551) |
|
2022-2736, gnl|mm7|chr15 (31568732-31568218) |
|
2022-2736, gnl|Mm7|chr15 (31568760-31568016) |
|
2022-2736, gnl|monDom2|scaffold_4 (30306708-30307185) |
|
2022-2736, gnl|oryCun1|scaffold_121610 (6923-7446) |
|
2022-2736, gnl|panTro1|chr4 (10893304-10893822) |
|
2022-2736, gnl|rheMac2|chr6 (10369234-10369755) |
|
2022-2736, gnl|rn3|chr2 (83490276-83489771) |
|
ret (1.1586) |
|
fco (0.628832) |
|
bfe (0.599431) |
|
pro (0.512033) |
|
ecc (0.46014) |
|
ece (0.45861) |
|
liv (0.438853) |
|
lin (0.436808) |
|
tes (0.415628) |
|
fcc (0.39557) |
|
sin (0.349895) |
|
spc (0.340097) |
|
vin (0.332557) |
|
sme (0.305437) |
|
isp (0.300752) |
|
ski (0.29347) |
|
kid (0.259471) |
|
tra (0.246184) |
|
cbl (0.229595) |
|
cty (0.20816) |
|
eje (0.197668) |
|
sag (0.182715) |
|
gul (0.177588) |
|
rec (0.17307) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eru (0.120048) |
|
ret (1.1586) |
|
fco (0.628832) |
|
bfe (0.599431) |
|
pro (0.512033) |
|
ecc (0.46014) |
|
ece (0.45861) |
|
liv (0.438853) |
|
lin (0.436808) |
|
tes (0.415628) |
|
fcc (0.39557) |
|
sin (0.349895) |
|
spc (0.340097) |
|
vin (0.332557) |
|
sme (0.305437) |
|
isp (0.300752) |
|
ski (0.29347) |
|
kid (0.259471) |
|
tra (0.246184) |
|
cbl (0.229595) |
|
cty (0.20816) |
|
eje (0.197668) |
|
sag (0.182715) |
|
gul (0.177588) |
|
rec (0.17307) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
bla (0.124347) |
|
eru (0.120048) |
