Ss1.1-Pig4-TMW8031O21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGCCCGCGCGCGGCGGGCGATGCTGGGGGGCGTCTCCGGGGCCCGGGAGCGCGAGG CGGAGGGCGACGGAGCCGGGGCTGTGCCTGCGCCGCCTGCCATCGACTTCCCGGCCGAGG GCTCGGACCCCAAGTACGATGAATCTGACGTGCCAGCAGAACTCCAGGTGCTGAAAGGGC CTCTGCAGCAGCCGACCTTCCCTTTTGCAGTTGCAAACCAGCTCTTGCTGGTTTCTTTGC TGGAACACTTGAGCCATGTGCACGAGCCCAACCCACTTCGCTCAAGACAGGTGTTTAAAT TGCTTTGTCAGACCTTTATCAAAATGGGGCTGCTGTCGTCCTTCACTTGTAGTGATGAGT TTAGCTCATTGCGGCTACATCACAACAGAGCTATTACGCACTTAATGAGGTCAGCCAGGG AGAGAGTCCGTCAGGGTCCTTGTGAGGATAATTCTCATATCCAGAAGACCAGATCAAGGG AAGTAAGCTTTGAAGCACAAACTTCCCGCTACTTAAATGAATTTGAAGAACTTGCCACCT TAGGAAAAGGTGGATATGGCAGAGTATACAAGGTCAGGAATAAATTAGATGGTCAATACT ATGCAATTAAAAAAATCCTGATAAAGGGGGCAACTAAAACAGATTGCAAATGCTTCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGCCCGCGCGCGGCGGGCGATGCTGGGGGGCGTCTCCGGGGCCCGGGAGCGCGAGG CGGAGGGCGACGGAGCCGGGGCTGTGCCTGCGCCGCCTGCCATCGACTTCCCGGCCGAGG GCTCGGACCCCAAGTACGATGAATCTGACGTGCCAGCAGAACTCCAGGTGCTGAAAGGGC CTCTGCAGCAGCCGACCTTCCCTTTTGCAGTTGCAAACCAGCTCTTGCTGGTTTCTTTGC TGGAACACTTGAGCCATGTGCACGAGCCCAACCCACTTCGCTCAAGACAGGTGTTTAAAT TGCTTTGTCAGACCTTTATCAAAATGGGGCTGCTGTCGTCCTTCACTTGTAGTGATGAGT TTAGCTCATTGCGGCTACATCACAACAGAGCTATTACGCACTTAATGAGGTCAGCCAGGG AGAGAGTCCGTCAGGGTCCTTGTGAGGATAATTCTCATATCCAGAAGACCAGATCAAGGG AAGTAAGCTTTGAAGCACAAACTTCCCGCTACTTAAATGAATTTGAAGAACTTGCCACCT TAGGAAAAGGTGGATATGGCAGAGTATACAAGGTCAGGAATAAATTAGATGGTCAATACT ATGCAATTAAAAAAATCCTGATAAAGGGGGCAACTAAAACAGATTGCAAATGCTTCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 141-300, gnl|bosTau2|chr25 (35764895-35765054) | |
| 141-300, gnl|canFam2|chr6 (14482297-14482142) | |
| 141-300, gnl|dasNov1|scaffold_87768 (5503-5351) | |
| 141-300, gnl|echTel1|scaffold_184076 (1380-1535) | |
| 141-300, gnl|hg17|chr3 (143651754-143651908) | |
| 141-300, gnl|Hg17|chr7 (5867577-5867418) | |
| 141-300, gnl|loxAfr1|scaffold_18677 (30099-30254) | |
| 141-300, gnl|monDom2|scaffold_19 (43650884-43651027) | |
| 141-300, gnl|oryCun1|scaffold_172967 (21527-21745) | |
| 141-300, gnl|panTro1|chr2 (146228637-146228792) | |
| 141-300, gnl|rheMac2|chr2 (145416771-145416619) | |
| 141-300, gnl|rn3|chr12 (11098585-11098433) | |
| 470-574, gnl|bosTau2|chr25 (35767797-35767901) | |
| 470-574, gnl|canFam2|chr6 (14476399-14476304) | |
| 470-574, gnl|canFam2|chr6 (14476282-14476374) | |
| 470-574, gnl|dasNov1|scaffold_58074 (6674-6764) | |
| 470-574, gnl|dasNov1|scaffold_87768 (5184-5105) | |
| 470-574, gnl|echTel1|scaffold_184076 (4907-5006) | |
| 470-574, gnl|echTel1|scaffold_184076 (5028-4936) | |
| 470-574, gnl|fr1|chrUn (189894014-189893915) | |
| 470-574, gnl|galGal2|chr14 (3169738-3169654) | |
| 470-574, gnl|hg17|chr3 (143652076-143652175) | |
| 470-574, gnl|hg17|chr7 (5859845-5859937) | |
| 470-574, gnl|Hg17|chr7 (5859966-5859862) | |
| 470-574, gnl|loxAfr1|scaffold_18677 (33448-33547) | |
| 470-574, gnl|loxAfr1|scaffold_18677 (33568-33477) | |
| 470-574, gnl|mm7|chr5 (142906504-142906603) | |
| 470-574, gnl|mm7|chr5 (142906625-142906533) | |
| 470-574, gnl|Mm7|chr5 (142906502-142906606) | |
| 470-574, gnl|monDom2|scaffold_19 (43653646-43653745) | |
| 470-574, gnl|monDom2|scaffold_19 (43653749-43653675) | |
| 470-574, gnl|oryCun1|scaffold_172967 (22104-22332) | |
| 470-574, gnl|oryCun1|scaffold_53603 (850-942) | |
| 470-574, gnl|panTro1|chr2 (146228959-146229058) | |
| 470-574, gnl|panTro1|chr6 (6942577-6942477) | |
| 470-574, gnl|rheMac2|chr2 (145416450-145416351) | |
| 470-574, gnl|rheMac2|chr3 (44229034-44229126) | |
| 470-574, gnl|rn3|chr12 (11093081-11092982) | |
| 470-574, gnl|rn3|chr12 (11092960-11093052) | |
| 470-574, gnl|tetNig1|chr2 (3945979-3946073) | |
| 470-574, gnl|tetNig1|chr2 (3946083-3946008) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-300, gnl|bosTau2|chr25 (35764895-35765054) | |
| 141-300, gnl|canFam2|chr6 (14482297-14482142) | |
| 141-300, gnl|dasNov1|scaffold_87768 (5503-5351) | |
| 141-300, gnl|echTel1|scaffold_184076 (1380-1535) | |
| 141-300, gnl|hg17|chr3 (143651754-143651908) | |
| 141-300, gnl|Hg17|chr7 (5867577-5867418) | |
| 141-300, gnl|loxAfr1|scaffold_18677 (30099-30254) | |
| 141-300, gnl|monDom2|scaffold_19 (43650884-43651027) | |
| 141-300, gnl|oryCun1|scaffold_172967 (21527-21745) | |
| 141-300, gnl|panTro1|chr2 (146228637-146228792) | |
| 141-300, gnl|rheMac2|chr2 (145416771-145416619) | |
| 141-300, gnl|rn3|chr12 (11098585-11098433) | |
| 470-574, gnl|bosTau2|chr25 (35767797-35767901) | |
| 470-574, gnl|canFam2|chr6 (14476399-14476304) | |
| 470-574, gnl|canFam2|chr6 (14476282-14476374) | |
| 470-574, gnl|dasNov1|scaffold_58074 (6674-6764) | |
| 470-574, gnl|dasNov1|scaffold_87768 (5184-5105) | |
| 470-574, gnl|echTel1|scaffold_184076 (4907-5006) | |
| 470-574, gnl|echTel1|scaffold_184076 (5028-4936) | |
| 470-574, gnl|fr1|chrUn (189894014-189893915) | |
| 470-574, gnl|galGal2|chr14 (3169738-3169654) | |
| 470-574, gnl|hg17|chr3 (143652076-143652175) | |
| 470-574, gnl|hg17|chr7 (5859845-5859937) | |
| 470-574, gnl|Hg17|chr7 (5859966-5859862) | |
| 470-574, gnl|loxAfr1|scaffold_18677 (33448-33547) | |
| 470-574, gnl|loxAfr1|scaffold_18677 (33568-33477) | |
| 470-574, gnl|mm7|chr5 (142906504-142906603) | |
| 470-574, gnl|mm7|chr5 (142906625-142906533) | |
| 470-574, gnl|Mm7|chr5 (142906502-142906606) | |
| 470-574, gnl|monDom2|scaffold_19 (43653646-43653745) | |
| 470-574, gnl|monDom2|scaffold_19 (43653749-43653675) | |
| 470-574, gnl|oryCun1|scaffold_172967 (22104-22332) | |
| 470-574, gnl|oryCun1|scaffold_53603 (850-942) | |
| 470-574, gnl|panTro1|chr2 (146228959-146229058) | |
| 470-574, gnl|panTro1|chr6 (6942577-6942477) | |
| 470-574, gnl|rheMac2|chr2 (145416450-145416351) | |
| 470-574, gnl|rheMac2|chr3 (44229034-44229126) | |
| 470-574, gnl|rn3|chr12 (11093081-11092982) | |
| 470-574, gnl|rn3|chr12 (11092960-11093052) | |
| 470-574, gnl|tetNig1|chr2 (3945979-3946073) | |
| 470-574, gnl|tetNig1|chr2 (3946083-3946008) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| eep (0.122564) |