Non-Coding RNA Search

Ss1.1-Pig4-TMW8031P11.3

Sequence:


               
               GAAAATAGCATGGACAGTGCAATCTCTGATGCTACCAGTGAGCTAGAAGGCAAGGATGGC
AAAGAGGACCTTGACCAGTTAGAAAATGTTCATGTAGAAGAAGAGGAAGAGTTACAGTCA
CAACAGCTACTCACACAACAGTTGCCTGAATCTAGAGTTGATAGTGAAATTGCTGTGGAG
GGCAGTAAGCTACCCACATCTGAACCAGAGCCTGACACTGAAATAGAGCCTAAAGAGAGC
AATGGCACAAAACTAGATGAACCTATCGCTGAGGAAACACCATCTCAAGATGAAGAGGAA
GGTGTATCTGATGTGGAAAGTGAGAGGAGCCAGGAACAGCCAGATAAAACAGTAGATATA
AGTGATTTGGCCACCAAGCTCCTGGACAGTTGGAAAGACCTAAAGGAAGTATATCGAATT
CCAAAGAAAAGTCAAACTGAAAAGGAGAGCACAATAACTGAACGAGGAAGGGATGCTGTT
GGCTTCAGAGATCAAACAGTTGCCCCAAAGACTCCTAACAGGTCAAGAGAGAGAGACCCA
GACAAACAAACTCAAAATAAAGAGAAAAGGAAACGAAGGGGCTCCCTCTCACCACCTTCT
TCTGCCTATGAGCGGGGAACAAAAAGGCCAGATGACAGATATGATACACCAACTTCTAAA
AAGAAAGTACGAATTAAAGATCGCAATAAACTTTCTACGGAGGAGCGTCGGAAGCTGTTT
GAGCAAGAGGTAGCTCAGCGGGAGGCTCAGAAACAGCAACAGCAGATGCAGAACCTGGGA
ATGACGTCTCCACTGCCCTATGACTCTCTTGGCTACAATGCCCCTCATCATCCCTTTGCT
GGCTACCCACCAGGTTATCCCATGCAGGCCTATGTGGATCCCAGCAATCCTAATGCTGGA
AAGGTGCTCCTTCCCACACCCAGCATGGATCCTGTGTGTTCTCCTGCTCCTTATGATCAT
TCTCAGCCCTTGGTGGGACATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATAGCATGGACAGTGCAATCTCTGATGCTACCAGTGAGCTAGAAGGCAAGGATGGC
AAAGAGGACCTTGACCAGTTAGAAAATGTTCATGTAGAAGAAGAGGAAGAGTTACAGTCA
CAACAGCTACTCACACAACAGTTGCCTGAATCTAGAGTTGATAGTGAAATTGCTGTGGAG
GGCAGTAAGCTACCCACATCTGAACCAGAGCCTGACACTGAAATAGAGCCTAAAGAGAGC
AATGGCACAAAACTAGATGAACCTATCGCTGAGGAAACACCATCTCAAGATGAAGAGGAA
GGTGTATCTGATGTGGAAAGTGAGAGGAGCCAGGAACAGCCAGATAAAACAGTAGATATA
AGTGATTTGGCCACCAAGCTCCTGGACAGTTGGAAAGACCTAAAGGAAGTATATCGAATT
CCAAAGAAAAGTCAAACTGAAAAGGAGAGCACAATAACTGAACGAGGAAGGGATGCTGTT
GGCTTCAGAGATCAAACAGTTGCCCCAAAGACTCCTAACAGGTCAAGAGAGAGAGACCCA
GACAAACAAACTCAAAATAAAGAGAAAAGGAAACGAAGGGGCTCCCTCTCACCACCTTCT
TCTGCCTATGAGCGGGGAACAAAAAGGCCAGATGACAGATATGATACACCAACTTCTAAA
AAGAAAGTACGAATTAAAGATCGCAATAAACTTTCTACGGAGGAGCGTCGGAAGCTGTTT
GAGCAAGAGGTAGCTCAGCGGGAGGCTCAGAAACAGCAACAGCAGATGCAGAACCTGGGA
ATGACGTCTCCACTGCCCTATGACTCTCTTGGCTACAATGCCCCTCATCATCCCTTTGCT
GGCTACCCACCAGGTTATCCCATGCAGGCCTATGTGGATCCCAGCAATCCTAATGCTGGA
AAGGTGCTCCTTCCCACACCCAGCATGGATCCTGTGTGTTCTCCTGCTCCTTATGATCAT
TCTCAGCCCTTGGTGGGACATTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BL12_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BL12_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               796-955, - strand, RNAz p=0.993864

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               796-955, - strand, RNAz p=0.993864

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-406, gnl|bosTau2|chr22 (41104740-41104335)
               

               
               1-406, gnl|Hg17|chr3 (47100618-47100213)
               

               
               1-406, gnl|Mm7|chr9 (110271572-110271977)
               


               
               637-984, gnl|bosTau2|chr22 (41091052-41090705)
               

               
               637-984, gnl|Hg17|chr3 (47073986-47073639)
               

               
               637-984, gnl|Mm7|chr9 (110291791-110292138)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-406, gnl|bosTau2|chr22 (41104740-41104335)
               

               
               1-406, gnl|Hg17|chr3 (47100618-47100213)
               

               
               1-406, gnl|Mm7|chr9 (110271572-110271977)
               


               
               637-984, gnl|bosTau2|chr22 (41091052-41090705)
               

               
               637-984, gnl|Hg17|chr3 (47073986-47073639)
               

               
               637-984, gnl|Mm7|chr9 (110291791-110292138)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-406, gnl\|bosTau2\|chr22 (41104740-41104335)
	1-406, gnl\|Hg17\|chr3 (47100618-47100213)
	1-406, gnl\|Mm7\|chr9 (110271572-110271977)

	637-984, gnl\|bosTau2\|chr22 (41091052-41090705)
	637-984, gnl\|Hg17\|chr3 (47073986-47073639)
	637-984, gnl\|Mm7\|chr9 (110291791-110292138)