Ss1.1-Pig4-TMW8032A08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAATTGCCTTCAGGACCTGAGCTCCTGCTTTGTGAAGGACATTGCTGTGTTTATCACTG ACAAGATCTCCAGCTTCTGCCTTCAAATGGCCTTACAGATTTTACACCGCAAGCTGCCTC AGTTTTGTGCCCACCTCTGTAGTGCTGTGATTGGCTACCTGAGTAGCCGCAATTCATCAG CAGATGGCAGCCCCCTACTGCTATTTCTGCGTGATCAGACAAGCTCCAGACTCCTGGAGC AGGTGCTGTTGGTGTCAGAGCCTGCGAGGCTTCAGAGTCTCTTTGAAGATCACTTTCAAG GACACTTGCAGACCCTGGCTGCACATCCTATAGCCAACTTCCCTTTGCAGCGTTTTCTGG ATGCTATCACCACCACTGAGTTGCTGTCCCCTGTGTTTGAGGAGCTGAGCCCTGCCCTGG AAGCCGTGCTGGCCCAGGGTCACCCAGGGGTGGTCATTGCCCTGGTGGGCGCCTGCCGCA GAGTTGGGACCCACCAAGCCCAGGTCCTGCAGCTGTTGTTGGAGGCCTTCCACTGTGCAG AGCCCGCTTCCCGGCAAGTGGCCTGTGTGCCTCTCTTTGCTGCTTTGATGGCTTATGAGG TGTACTATGGACTGGTGGAGGAGGAAGGGGCCGTGCCTGCGGAGCATCAGGTAGAAATGG CCACAGCCAGGGACCTGGGGGAAGTGACAGTCATAGGGTCTCTACTGCTCCAGCATTTGC TGCACTTCTCCAGTCCTAGTCTTGTGCTTCGGAGTCTGGGTGCCTTGACAGGACCACAGC TTCTGACTCTGGCCCAGAGCCCTGCTGGTTCCCATGTGCTTGATGCGGTCTTGGCCAGTC CTGCCGTGACGCGTAAGCAGCGCCGCCGTGTGCTGAAGACCCTAAAGGGACAATATGTGG CTCTGGCCTGTAGTCGCCATGGTAGCCGTGTGCTAGATGCCATCTGGAATGGAGCAGCCT TGGGGGCCCGGAAGGAAATTGCTGCTGAACTGGGGGAGCGGAACCAGGAGCTGATAAGAG ACCCTTTTGGCCACCATGTGGCTCGAAATGTGGCCCTGACTACCTTCCTGAAGCGTCGAG AGGCTTGGGAACAGCAGCAGGGAGCAGTGGCCAAGCGGAGGCGGGCCTTGAGCTCCATTC TTGAAGACTGAAGCCTCTGGATCGAACTGGGTGTTGATGGGGGAGGGGGGAAAGGAGTAC CTATCCTGTCTCATTCCTAGTTTAAACCGGAGTCAAAAGTCTTACTGATAAACACTTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAATTGCCTTCAGGACCTGAGCTCCTGCTTTGTGAAGGACATTGCTGTGTTTATCACTG ACAAGATCTCCAGCTTCTGCCTTCAAATGGCCTTACAGATTTTACACCGCAAGCTGCCTC AGTTTTGTGCCCACCTCTGTAGTGCTGTGATTGGCTACCTGAGTAGCCGCAATTCATCAG CAGATGGCAGCCCCCTACTGCTATTTCTGCGTGATCAGACAAGCTCCAGACTCCTGGAGC AGGTGCTGTTGGTGTCAGAGCCTGCGAGGCTTCAGAGTCTCTTTGAAGATCACTTTCAAG GACACTTGCAGACCCTGGCTGCACATCCTATAGCCAACTTCCCTTTGCAGCGTTTTCTGG ATGCTATCACCACCACTGAGTTGCTGTCCCCTGTGTTTGAGGAGCTGAGCCCTGCCCTGG AAGCCGTGCTGGCCCAGGGTCACCCAGGGGTGGTCATTGCCCTGGTGGGCGCCTGCCGCA GAGTTGGGACCCACCAAGCCCAGGTCCTGCAGCTGTTGTTGGAGGCCTTCCACTGTGCAG AGCCCGCTTCCCGGCAAGTGGCCTGTGTGCCTCTCTTTGCTGCTTTGATGGCTTATGAGG TGTACTATGGACTGGTGGAGGAGGAAGGGGCCGTGCCTGCGGAGCATCAGGTAGAAATGG CCACAGCCAGGGACCTGGGGGAAGTGACAGTCATAGGGTCTCTACTGCTCCAGCATTTGC TGCACTTCTCCAGTCCTAGTCTTGTGCTTCGGAGTCTGGGTGCCTTGACAGGACCACAGC TTCTGACTCTGGCCCAGAGCCCTGCTGGTTCCCATGTGCTTGATGCGGTCTTGGCCAGTC CTGCCGTGACGCGTAAGCAGCGCCGCCGTGTGCTGAAGACCCTAAAGGGACAATATGTGG CTCTGGCCTGTAGTCGCCATGGTAGCCGTGTGCTAGATGCCATCTGGAATGGAGCAGCCT TGGGGGCCCGGAAGGAAATTGCTGCTGAACTGGGGGAGCGGAACCAGGAGCTGATAAGAG ACCCTTTTGGCCACCATGTGGCTCGAAATGTGGCCCTGACTACCTTCCTGAAGCGTCGAG AGGCTTGGGAACAGCAGCAGGGAGCAGTGGCCAAGCGGAGGCGGGCCTTGAGCTCCATTC TTGAAGACTGAAGCCTCTGGATCGAACTGGGTGTTGATGGGGGAGGGGGGAAAGGAGTAC CTATCCTGTCTCATTCCTAGTTTAAACCGGAGTCAAAAGTCTTACTGATAAACACTTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 188-323, - strand, RNAz p=0.746241 | |
| 1151-1260, + strand, RNAz p=0.946599 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 188-323, - strand, RNAz p=0.746241 | |
| 1151-1260, + strand, RNAz p=0.946599 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_174913, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 188-386, gnl|bosTau2|chr10 (12199020-12198822) | |
| 188-386, gnl|canFam2|chr8 (7278668-7278884) | |
| 188-386, gnl|danRer3|chrUn (106844489-106844294) | |
| 188-386, gnl|dasNov1|scaffold_21827 (6727-6511) | |
| 188-386, gnl|echTel1|scaffold_298600 (10098-10312) | |
| 188-386, gnl|hg17|chr14 (23841263-23841479) | |
| 188-386, gnl|Hg17|chr14 (23841275-23841473) | |
| 188-386, gnl|mm7|chr14 (50618391-50618607) | |
| 188-386, gnl|Mm7|chr14 (50618403-50618601) | |
| 188-386, gnl|monDom2|scaffold_12 (25411210-25410996) | |
| 188-386, gnl|oryCun1|scaffold_178102 (187182-187398) | |
| 188-386, gnl|panTro1|chr15 (22745525-22745741) | |
| 188-386, gnl|rheMac2|chr7 (87197932-87198148) | |
| 188-386, gnl|rn3|chr15 (33929326-33929540) | |
| 188-386, gnl|tetNig1|chrUn_random (117579988-117579778) | |
| 188-386, gnl|xenTro1|scaffold_96 (1420364-1420582) | |
| 647-903, gnl|bosTau2|chr10 (12197377-12197121) | |
| 647-903, gnl|Hg17|chr14 (23843083-23843339) | |
| 647-903, gnl|Mm7|chr14 (50620161-50620410) | |
| 993-1260, gnl|bosTau2|chr10 (12196428-12196160) | |
| 993-1260, gnl|canFam2|chr8 (7280861-7281442) | |
| 993-1260, gnl|dasNov1|scaffold_21827 (3557-2962) | |
| 993-1260, gnl|echTel1|scaffold_104751 (1035-518) | |
| 993-1260, gnl|hg17|chr14 (23843652-23844234) | |
| 993-1260, gnl|Hg17|chr14 (23843983-23844250) | |
| 993-1260, gnl|mm7|chr14 (50620726-50621228) | |
| 993-1260, gnl|Mm7|chr14 (50620993-50621402) | |
| 993-1260, gnl|monDom2|scaffold_12 (25404105-25403616) | |
| 993-1260, gnl|oryCun1|scaffold_178102 (189414-189971) | |
| 993-1260, gnl|panTro1|chr15 (22747915-22748497) | |
| 993-1260, gnl|rheMac2|chr7 (87200338-87200913) | |
| 993-1260, gnl|rn3|chr15 (33931491-33932019) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 188-386, gnl|bosTau2|chr10 (12199020-12198822) | |
| 188-386, gnl|canFam2|chr8 (7278668-7278884) | |
| 188-386, gnl|danRer3|chrUn (106844489-106844294) | |
| 188-386, gnl|dasNov1|scaffold_21827 (6727-6511) | |
| 188-386, gnl|echTel1|scaffold_298600 (10098-10312) | |
| 188-386, gnl|hg17|chr14 (23841263-23841479) | |
| 188-386, gnl|Hg17|chr14 (23841275-23841473) | |
| 188-386, gnl|mm7|chr14 (50618391-50618607) | |
| 188-386, gnl|Mm7|chr14 (50618403-50618601) | |
| 188-386, gnl|monDom2|scaffold_12 (25411210-25410996) | |
| 188-386, gnl|oryCun1|scaffold_178102 (187182-187398) | |
| 188-386, gnl|panTro1|chr15 (22745525-22745741) | |
| 188-386, gnl|rheMac2|chr7 (87197932-87198148) | |
| 188-386, gnl|rn3|chr15 (33929326-33929540) | |
| 188-386, gnl|tetNig1|chrUn_random (117579988-117579778) | |
| 188-386, gnl|xenTro1|scaffold_96 (1420364-1420582) | |
| 647-903, gnl|bosTau2|chr10 (12197377-12197121) | |
| 647-903, gnl|Hg17|chr14 (23843083-23843339) | |
| 647-903, gnl|Mm7|chr14 (50620161-50620410) | |
| 993-1260, gnl|bosTau2|chr10 (12196428-12196160) | |
| 993-1260, gnl|canFam2|chr8 (7280861-7281442) | |
| 993-1260, gnl|dasNov1|scaffold_21827 (3557-2962) | |
| 993-1260, gnl|echTel1|scaffold_104751 (1035-518) | |
| 993-1260, gnl|hg17|chr14 (23843652-23844234) | |
| 993-1260, gnl|Hg17|chr14 (23843983-23844250) | |
| 993-1260, gnl|mm7|chr14 (50620726-50621228) | |
| 993-1260, gnl|Mm7|chr14 (50620993-50621402) | |
| 993-1260, gnl|monDom2|scaffold_12 (25404105-25403616) | |
| 993-1260, gnl|oryCun1|scaffold_178102 (189414-189971) | |
| 993-1260, gnl|panTro1|chr15 (22747915-22748497) | |
| 993-1260, gnl|rheMac2|chr7 (87200338-87200913) | |
| 993-1260, gnl|rn3|chr15 (33931491-33932019) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| ldo (0.194005) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cli (0.152812) | |
| cly (0.120642) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.194005) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cli (0.152812) | |
| cly (0.120642) |