Ss1.1-Pig4-TMW8032A13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGAAGGGTAGGGGTCCGCGAAGGGTGGAGCTGACCGCGGCCCCTCCCGCTCTCCCGCC GCTGTGTCCGTCCGCTCCCGCCGCCCCTGCCCTCCATCCAGGACCGGCCGTGGGGCGGGC GACTTCGCGGCGGCTGCCGGTGCTCCCAACTGAAAGGCACTGTTTCCACAGCCCGCGCTG CCCGCCACGTCCCCGGTCTCGGCCGACGGCGCTGCGCGGCGGGTGACCTCTCCGAGCCCG GCGCGATGACGGCTCCTTGCTCCCGGCTGGCCCGGCTTCCTCCGCGCCGCCGGCTCCGGC TCTTGCCGTTCCCGCCGCCGCTGCTGTTGCTGCTGCTGGCGGCCGCGGGCCCCGCGCGCG GCTGGGAGAGCGGAGACCTGGAGTTGTTTGACTTGGTGGAGGAGGTGCAGCTCAACTTCT ACCAGTTCCTCGGGGTGCAGCAGGATGCTTCTTCTGCAGACATTAGGAAAGCATATCGTA AGCTTTCACTAACTTTGCATCCAGACAAGAATAAAGAGGAAAATGCAGAAACTCAGTTTA GACAATTGGTGGCCATTTATGAAGTTTTAAAGGATGATGAACGAAGGCAGAGGTATGATG ATATTCTGATCAATGGACTTCCAGATTGGCGACAGCCTGTATACTACTACAGGCGAGTGA GAAAAATGAGCAATGCTGAGCTGGCATTACTTTTGTTCATTATTCTCACAGTGGGTCATT ATGCTGTGGTATGGTCAATCTACCTGGAAAAACAATTGGATGAACTGCTTAGTAGAAAAA AGAGAGAAAAGAAAAAAAAGACAGGCGGCAAGACTGTGGATGTGTCAAAACTTGGTGCTT CAGAAAAAAATGAAAGATTACTGTTGAAACCACAGTGGCATGATTTGCTTCCATGCAAGC TGGGAATTTGGTTTTGCCTTACACTAAAAGCATTGCCTCATCTAATCCAGGATGCTGGGC AGTTTTATGCTAAGTATAAAGAAACAAAATTGAAGGAAAAGGAAGATGCGTTGACTAGAG CTGAACTTGAAACACTTCAAAAGGAGAAGAAAGTTAAAGTAAAAAAACCAAAACCTGAAT TTCCTGTATATACGCCTTTAGAAAGTGCATATATTCAATCTTACGATCATGGAACTTCCA TAGAAGAAATTGAGGAACAAATGGATGATTGGCTGGAAAACAGAAACAGAACACAGAAAA AACAGGCACCTGAATGGACAGAAGAGGACCTCAGCCAGCTGACAAGAAGTATGGTTAAGT TCCCAGGAGGGACCCCAGGTCGATGGGAAAAGATTGCCCATGAATTGGGTCGATCGGTGA CAGATGTGACAACCAAAGCTAAGCAACTGAAGGATTCAGTTACCTGCTCCCCAGGAATGG TCAGGCTCTCCGACCTCAGACCCACGGCTCAGAATCCCAGGCCCCCCAAGAGCACGGCGG CCCTGCCGGACGATCTCATCACGCAGCGGGAGGAGCCGGCCGCGGAGGAGGCGGAGGAGC AGGGCGAGGCGGAGGAGCAGGAGGCCGAGGTCCCCGAGAGCCGGCCCCGGAGGCGGAGGC CCGCGCGGCTGCCCGAGCCGGAGGAGAAGGTCCGAGCCAAGAGGCAGAAGGACTTCGATT TGTCAGAACAGATGGAGTCCAGCGATGAGGAGAGCCAGAGGAGAGAGAGAACGCGAGCCA CAGAGGAGCCCTGGACTCAGAACCAACAGAAACTTCTGGAATTAGCCTTGCAGCAGTACC CAAAGGGATCCTCTGAGCGCTGGGACAAGATAGCCAAGTGCGTCCCGTCTAAGACTAAGG AAGACTGTATCGCTAGATACAAGCTGCTGGTTGAACTGGTCCAAAAGAAAAAACAAGCTA AAAGCTGAATCCTCTGGAAGATGATGTTTACCTTTATTTTCTGAAATTATTTTAAAAATC TTATGCAGAAATTTGCATTTTGTACCTCAGTATTTCTATACGTCATGTGCCTTAGTAAAA AAAAACAAACAAAAAAAAACACAAAATTTAAAATAAATGTGCTACATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGAAGGGTAGGGGTCCGCGAAGGGTGGAGCTGACCGCGGCCCCTCCCGCTCTCCCGCC GCTGTGTCCGTCCGCTCCCGCCGCCCCTGCCCTCCATCCAGGACCGGCCGTGGGGCGGGC GACTTCGCGGCGGCTGCCGGTGCTCCCAACTGAAAGGCACTGTTTCCACAGCCCGCGCTG CCCGCCACGTCCCCGGTCTCGGCCGACGGCGCTGCGCGGCGGGTGACCTCTCCGAGCCCG GCGCGATGACGGCTCCTTGCTCCCGGCTGGCCCGGCTTCCTCCGCGCCGCCGGCTCCGGC TCTTGCCGTTCCCGCCGCCGCTGCTGTTGCTGCTGCTGGCGGCCGCGGGCCCCGCGCGCG GCTGGGAGAGCGGAGACCTGGAGTTGTTTGACTTGGTGGAGGAGGTGCAGCTCAACTTCT ACCAGTTCCTCGGGGTGCAGCAGGATGCTTCTTCTGCAGACATTAGGAAAGCATATCGTA AGCTTTCACTAACTTTGCATCCAGACAAGAATAAAGAGGAAAATGCAGAAACTCAGTTTA GACAATTGGTGGCCATTTATGAAGTTTTAAAGGATGATGAACGAAGGCAGAGGTATGATG ATATTCTGATCAATGGACTTCCAGATTGGCGACAGCCTGTATACTACTACAGGCGAGTGA GAAAAATGAGCAATGCTGAGCTGGCATTACTTTTGTTCATTATTCTCACAGTGGGTCATT ATGCTGTGGTATGGTCAATCTACCTGGAAAAACAATTGGATGAACTGCTTAGTAGAAAAA AGAGAGAAAAGAAAAAAAAGACAGGCGGCAAGACTGTGGATGTGTCAAAACTTGGTGCTT CAGAAAAAAATGAAAGATTACTGTTGAAACCACAGTGGCATGATTTGCTTCCATGCAAGC TGGGAATTTGGTTTTGCCTTACACTAAAAGCATTGCCTCATCTAATCCAGGATGCTGGGC AGTTTTATGCTAAGTATAAAGAAACAAAATTGAAGGAAAAGGAAGATGCGTTGACTAGAG CTGAACTTGAAACACTTCAAAAGGAGAAGAAAGTTAAAGTAAAAAAACCAAAACCTGAAT TTCCTGTATATACGCCTTTAGAAAGTGCATATATTCAATCTTACGATCATGGAACTTCCA TAGAAGAAATTGAGGAACAAATGGATGATTGGCTGGAAAACAGAAACAGAACACAGAAAA AACAGGCACCTGAATGGACAGAAGAGGACCTCAGCCAGCTGACAAGAAGTATGGTTAAGT TCCCAGGAGGGACCCCAGGTCGATGGGAAAAGATTGCCCATGAATTGGGTCGATCGGTGA CAGATGTGACAACCAAAGCTAAGCAACTGAAGGATTCAGTTACCTGCTCCCCAGGAATGG TCAGGCTCTCCGACCTCAGACCCACGGCTCAGAATCCCAGGCCCCCCAAGAGCACGGCGG CCCTGCCGGACGATCTCATCACGCAGCGGGAGGAGCCGGCCGCGGAGGAGGCGGAGGAGC AGGGCGAGGCGGAGGAGCAGGAGGCCGAGGTCCCCGAGAGCCGGCCCCGGAGGCGGAGGC CCGCGCGGCTGCCCGAGCCGGAGGAGAAGGTCCGAGCCAAGAGGCAGAAGGACTTCGATT TGTCAGAACAGATGGAGTCCAGCGATGAGGAGAGCCAGAGGAGAGAGAGAACGCGAGCCA CAGAGGAGCCCTGGACTCAGAACCAACAGAAACTTCTGGAATTAGCCTTGCAGCAGTACC CAAAGGGATCCTCTGAGCGCTGGGACAAGATAGCCAAGTGCGTCCCGTCTAAGACTAAGG AAGACTGTATCGCTAGATACAAGCTGCTGGTTGAACTGGTCCAAAAGAAAAAACAAGCTA AAAGCTGAATCCTCTGGAAGATGATGTTTACCTTTATTTTCTGAAATTATTTTAAAAATC TTATGCAGAAATTTGCATTTTGTACCTCAGTATTTCTATACGTCATGTGCCTTAGTAAAA AAAAACAAACAAAAAAAAACACAAAATTTAAAATAAATGTGCTACATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 591-759, + strand, RNAz p=0.989981 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 591-759, + strand, RNAz p=0.989981 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of CR613772, + | |
| 5' of CR613772, + |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 441-545, gnl|bosTau2|chr13 (11344452-11344348) | |
| 441-545, gnl|canFam2|chr2 (14087529-14087412) | |
| 441-545, gnl|danRer3|chr2 (12424783-12424672) | |
| 441-545, gnl|dasNov1|scaffold_15428 (21833-21950) | |
| 441-545, gnl|echTel1|scaffold_294446 (6000-5884) | |
| 441-545, gnl|fr1|chrUn (288072062-288072176) | |
| 441-545, gnl|galGal2|chr2 (17163590-17163473) | |
| 441-545, gnl|hg17|chr10 (22257968-22258085) | |
| 441-545, gnl|Hg17|chr10 (22258079-22257975) | |
| 441-545, gnl|loxAfr1|scaffold_10192 (52232-52349) | |
| 441-545, gnl|mm7|chr2 (18382051-18382167) | |
| 441-545, gnl|Mm7|chr2 (18382162-18382058) | |
| 441-545, gnl|monDom2|scaffold_7 (47007983-47007866) | |
| 441-545, gnl|oryCun1|scaffold_182681 (849-732) | |
| 441-545, gnl|panTro1|chr8 (22467042-22467159) | |
| 441-545, gnl|rheMac2|chr9 (22138630-22138747) | |
| 441-545, gnl|rn3|chr17 (92484797-92484913) | |
| 441-545, gnl|xenTro1|scaffold_42 (2811276-2811159) | |
| 591-759, gnl|bosTau2|chr13 (11337719-11337551) | |
| 591-759, gnl|canFam2|chr2 (14094547-14094366) | |
| 591-759, gnl|danRer3|chr2 (12425531-12425350) | |
| 591-759, gnl|dasNov1|scaffold_15428 (14995-15176) | |
| 591-759, gnl|echTel1|scaffold_294446 (13238-13057) | |
| 591-759, gnl|fr1|chrUn (288071587-288071763) | |
| 591-759, gnl|galGal2|chr2 (17171387-17171206) | |
| 591-759, gnl|hg17|chr10 (22249724-22249905) | |
| 591-759, gnl|Hg17|chr10 (22249900-22249732) | |
| 591-759, gnl|loxAfr1|scaffold_10192 (44801-44982) | |
| 591-759, gnl|mm7|chr2 (18373934-18374118) | |
| 591-759, gnl|Mm7|chr2 (18374110-18373942) | |
| 591-759, gnl|monDom2|scaffold_7 (47014771-47014590) | |
| 591-759, gnl|oryCun1|scaffold_182681 (11153-10972) | |
| 591-759, gnl|panTro1|chr8 (22458810-22458991) | |
| 591-759, gnl|rheMac2|chr9 (22130365-22130546) | |
| 591-759, gnl|rn3|chr17 (92477330-92477511) | |
| 591-759, gnl|tetNig1|chrUn_random (171636709-171636887) | |
| 591-759, gnl|xenTro1|scaffold_42 (2820551-2820370) | |
| 1045-1206, gnl|bosTau2|chr13 (11317341-11317180) | |
| 1045-1206, gnl|canFam2|chr2 (14123166-14122995) | |
| 1045-1206, gnl|danRer3|chr2 (12426292-12426131) | |
| 1045-1206, gnl|dasNov1|scaffold_125915 (296-467) | |
| 1045-1206, gnl|echTel1|scaffold_166377 (2039-1868) | |
| 1045-1206, gnl|galGal2|chr2 (17192129-17191955) | |
| 1045-1206, gnl|hg17|chr10 (22211212-22211377) | |
| 1045-1206, gnl|Hg17|chr10 (22211371-22211216) | |
| 1045-1206, gnl|loxAfr1|scaffold_51083 (16719-16890) | |
| 1045-1206, gnl|mm7|chr2 (18349777-18349948) | |
| 1045-1206, gnl|Mm7|chr2 (18349942-18349781) | |
| 1045-1206, gnl|monDom2|scaffold_7 (47070997-47070823) | |
| 1045-1206, gnl|panTro1|chr8 (22420373-22420538) | |
| 1045-1206, gnl|rheMac2|chr9 (22093844-22094009) | |
| 1045-1206, gnl|rn3|chr17 (92456493-92456664) | |
| 1372-1800, gnl|bosTau2|chr13 (11238398-11237967) | |
| 1372-1800, gnl|Hg17|chr10 (22088556-22088104) | |
| 1372-1800, gnl|Mm7|chr2 (18285061-18284609) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 441-545, gnl|bosTau2|chr13 (11344452-11344348) | |
| 441-545, gnl|canFam2|chr2 (14087529-14087412) | |
| 441-545, gnl|danRer3|chr2 (12424783-12424672) | |
| 441-545, gnl|dasNov1|scaffold_15428 (21833-21950) | |
| 441-545, gnl|echTel1|scaffold_294446 (6000-5884) | |
| 441-545, gnl|fr1|chrUn (288072062-288072176) | |
| 441-545, gnl|galGal2|chr2 (17163590-17163473) | |
| 441-545, gnl|hg17|chr10 (22257968-22258085) | |
| 441-545, gnl|Hg17|chr10 (22258079-22257975) | |
| 441-545, gnl|loxAfr1|scaffold_10192 (52232-52349) | |
| 441-545, gnl|mm7|chr2 (18382051-18382167) | |
| 441-545, gnl|Mm7|chr2 (18382162-18382058) | |
| 441-545, gnl|monDom2|scaffold_7 (47007983-47007866) | |
| 441-545, gnl|oryCun1|scaffold_182681 (849-732) | |
| 441-545, gnl|panTro1|chr8 (22467042-22467159) | |
| 441-545, gnl|rheMac2|chr9 (22138630-22138747) | |
| 441-545, gnl|rn3|chr17 (92484797-92484913) | |
| 441-545, gnl|xenTro1|scaffold_42 (2811276-2811159) | |
| 591-759, gnl|bosTau2|chr13 (11337719-11337551) | |
| 591-759, gnl|canFam2|chr2 (14094547-14094366) | |
| 591-759, gnl|danRer3|chr2 (12425531-12425350) | |
| 591-759, gnl|dasNov1|scaffold_15428 (14995-15176) | |
| 591-759, gnl|echTel1|scaffold_294446 (13238-13057) | |
| 591-759, gnl|fr1|chrUn (288071587-288071763) | |
| 591-759, gnl|galGal2|chr2 (17171387-17171206) | |
| 591-759, gnl|hg17|chr10 (22249724-22249905) | |
| 591-759, gnl|Hg17|chr10 (22249900-22249732) | |
| 591-759, gnl|loxAfr1|scaffold_10192 (44801-44982) | |
| 591-759, gnl|mm7|chr2 (18373934-18374118) | |
| 591-759, gnl|Mm7|chr2 (18374110-18373942) | |
| 591-759, gnl|monDom2|scaffold_7 (47014771-47014590) | |
| 591-759, gnl|oryCun1|scaffold_182681 (11153-10972) | |
| 591-759, gnl|panTro1|chr8 (22458810-22458991) | |
| 591-759, gnl|rheMac2|chr9 (22130365-22130546) | |
| 591-759, gnl|rn3|chr17 (92477330-92477511) | |
| 591-759, gnl|tetNig1|chrUn_random (171636709-171636887) | |
| 591-759, gnl|xenTro1|scaffold_42 (2820551-2820370) | |
| 1045-1206, gnl|bosTau2|chr13 (11317341-11317180) | |
| 1045-1206, gnl|canFam2|chr2 (14123166-14122995) | |
| 1045-1206, gnl|danRer3|chr2 (12426292-12426131) | |
| 1045-1206, gnl|dasNov1|scaffold_125915 (296-467) | |
| 1045-1206, gnl|echTel1|scaffold_166377 (2039-1868) | |
| 1045-1206, gnl|galGal2|chr2 (17192129-17191955) | |
| 1045-1206, gnl|hg17|chr10 (22211212-22211377) | |
| 1045-1206, gnl|Hg17|chr10 (22211371-22211216) | |
| 1045-1206, gnl|loxAfr1|scaffold_51083 (16719-16890) | |
| 1045-1206, gnl|mm7|chr2 (18349777-18349948) | |
| 1045-1206, gnl|Mm7|chr2 (18349942-18349781) | |
| 1045-1206, gnl|monDom2|scaffold_7 (47070997-47070823) | |
| 1045-1206, gnl|panTro1|chr8 (22420373-22420538) | |
| 1045-1206, gnl|rheMac2|chr9 (22093844-22094009) | |
| 1045-1206, gnl|rn3|chr17 (92456493-92456664) | |
| 1372-1800, gnl|bosTau2|chr13 (11238398-11237967) | |
| 1372-1800, gnl|Hg17|chr10 (22088556-22088104) | |
| 1372-1800, gnl|Mm7|chr2 (18285061-18284609) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cki (0.495704) | |
| cut (0.339847) | |
| cte (0.29274) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cje (0.165235) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.495704) | |
| cut (0.339847) | |
| cte (0.29274) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cje (0.165235) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cty (0.10408) |