Ss1.1-Pig4-TMW8032A20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCGGGATTCGGGGGCGCTAAAGTCGCAAGGGCAGGGCGGGAAGGAAGATCCGGAACGG GGCAGAGGATCCGGAGCTGGAGCCCCCCCAGAACCTTCCCTCCGTGAAGAAGAGAGCAGG TCGGGACGAGTGAGGCTGGCCCCATGTACCCGGAATCGACCACGGGCTCCCCGGCTCGGC TCTCCCTGCGGCAGACGGGCTCCCCCGGCATGATCTACAGTACTCGGTATGGGAGCCCCA AAAGACAGCTCCAGTTTTACAGGAACCTGGGCAAGTCCGGCCTGAGGGTCTCCTGCCTGG GGCTCGGAACATGGGTGACCTTCGGAGGCCAGATCACGGACGAGATGGCAGAGCAGCTAA TGACCTTGGCCTACGACAACGGCATCAACCTCTTCGATACTGCAGAGGTCTACGCTGCGG GCAAGGCTGAGGTGGTTCTAGGAAACATCATCAAGAAGAAGGGATGGAGGCGATCCAGCC TCGTCATCACCACCAAAGTCTTCTGGGGAGGAAAAGCGGAGACCGAGAGGGGCCTTTCCC GGAAGCACATCATAGAAGGTCTGAAAGCCTCCCTGGAGCGGCTGCAGTTGGAGTATGTGG ACGTGGTGTTCGCCAACCGCCCGGACCCCAACACGCCCATGGAAGAGACGGTGCGCGCCA TGACCCACGTCATCAACCAGGGGATGGCCATGTATTGGGGCACGTCACGCTGGAGCTCCA TGGAGATCATGGAGGCCTACTCCGTGGCCCGGCAGTTCAACCTGATCCCGCCCATCTGCG AGCAGGCCGAGTACCACATGTTCCAGCGCGAGAAGGTGGAGGTGCAGCTGCCAGAGCTCT TCCACAAAATAGGAGTGGGCGCCATGACCTGGTCCCCTCTGGCCTGCGGCATCGTTTCTG GAAAGTATGACAGTGGCATCCCGCCCTACTCGAGAGCCTCCTTGAAGGGCTACCAGTGGC TGAAGGACAAGATCCTGAGTGAGGAGGGCCGGCGCCAGCAGGCCAAGCTGAAGGAGCTGC AGGCCATCGCCGAGCGCCTGGGCTGCACCCTCCCGCAGCTGGCCATAGCCTGGTGCCTGA GGAATGAGGGGGTCAGCTCCGTGCTCCTGGGTGCTTCCAGCGCAGACCAGCTGATGGAAA ACATTGGAGCAATTCAGGTTCTTCCAAAACTGTCGTCTTCCACTATCCACGAGATCGATA GTATTTTGGGCAATAAACCCTACAGCAAAAAGGACTACAGATCCTAAGAAGCCCCACCAC CACCACCCTGGCCATTCGCCTGGACAGTTTCGTTCCCCTCCTAGTCTCTGTTCGCTCGCT TAAGCTGTCTTGAAGCCAAGTCAAGAGTCTGGTTTGCAGCAAAAACAAAACAACGCACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCGGGATTCGGGGGCGCTAAAGTCGCAAGGGCAGGGCGGGAAGGAAGATCCGGAACGG GGCAGAGGATCCGGAGCTGGAGCCCCCCCAGAACCTTCCCTCCGTGAAGAAGAGAGCAGG TCGGGACGAGTGAGGCTGGCCCCATGTACCCGGAATCGACCACGGGCTCCCCGGCTCGGC TCTCCCTGCGGCAGACGGGCTCCCCCGGCATGATCTACAGTACTCGGTATGGGAGCCCCA AAAGACAGCTCCAGTTTTACAGGAACCTGGGCAAGTCCGGCCTGAGGGTCTCCTGCCTGG GGCTCGGAACATGGGTGACCTTCGGAGGCCAGATCACGGACGAGATGGCAGAGCAGCTAA TGACCTTGGCCTACGACAACGGCATCAACCTCTTCGATACTGCAGAGGTCTACGCTGCGG GCAAGGCTGAGGTGGTTCTAGGAAACATCATCAAGAAGAAGGGATGGAGGCGATCCAGCC TCGTCATCACCACCAAAGTCTTCTGGGGAGGAAAAGCGGAGACCGAGAGGGGCCTTTCCC GGAAGCACATCATAGAAGGTCTGAAAGCCTCCCTGGAGCGGCTGCAGTTGGAGTATGTGG ACGTGGTGTTCGCCAACCGCCCGGACCCCAACACGCCCATGGAAGAGACGGTGCGCGCCA TGACCCACGTCATCAACCAGGGGATGGCCATGTATTGGGGCACGTCACGCTGGAGCTCCA TGGAGATCATGGAGGCCTACTCCGTGGCCCGGCAGTTCAACCTGATCCCGCCCATCTGCG AGCAGGCCGAGTACCACATGTTCCAGCGCGAGAAGGTGGAGGTGCAGCTGCCAGAGCTCT TCCACAAAATAGGAGTGGGCGCCATGACCTGGTCCCCTCTGGCCTGCGGCATCGTTTCTG GAAAGTATGACAGTGGCATCCCGCCCTACTCGAGAGCCTCCTTGAAGGGCTACCAGTGGC TGAAGGACAAGATCCTGAGTGAGGAGGGCCGGCGCCAGCAGGCCAAGCTGAAGGAGCTGC AGGCCATCGCCGAGCGCCTGGGCTGCACCCTCCCGCAGCTGGCCATAGCCTGGTGCCTGA GGAATGAGGGGGTCAGCTCCGTGCTCCTGGGTGCTTCCAGCGCAGACCAGCTGATGGAAA ACATTGGAGCAATTCAGGTTCTTCCAAAACTGTCGTCTTCCACTATCCACGAGATCGATA GTATTTTGGGCAATAAACCCTACAGCAAAAAGGACTACAGATCCTAAGAAGCCCCACCAC CACCACCCTGGCCATTCGCCTGGACAGTTTCGTTCCCCTCCTAGTCTCTGTTCGCTCGCT TAAGCTGTCTTGAAGCCAAGTCAAGAGTCTGGTTTGCAGCAAAAACAAAACAACGCACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 736-1273, + strand, RNAz p=0.79516 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 736-1273, + strand, RNAz p=0.79516 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 731-853, gnl|bosTau2|chr16 (35039372-35039250) | |
| 731-853, gnl|canFam2|chr5 (63016023-63016169) | |
| 731-853, gnl|danRer3|chr23 (23560646-23560520) | |
| 731-853, gnl|dasNov1|scaffold_12367 (7874-7746) | |
| 731-853, gnl|echTel1|scaffold_319550 (39024-38876) | |
| 731-853, gnl|fr1|chrUn (251556278-251556127) | |
| 731-853, gnl|galGal2|chr21 (582664-582536) | |
| 731-853, gnl|hg17|chr1 (6089629-6089775) | |
| 731-853, gnl|Hg17|chr1 (6089648-6089770) | |
| 731-853, gnl|loxAfr1|scaffold_36356 (2552-2409) | |
| 731-853, gnl|mm7|chr4 (151384808-151384663) | |
| 731-853, gnl|Mm7|chr4 (151384788-151384666) | |
| 731-853, gnl|monDom2|scaffold_78 (2481504-2481364) | |
| 731-853, gnl|oryCun1|scaffold_101665 (8782-8638) | |
| 731-853, gnl|panTro1|chr1 (6013933-6014079) | |
| 731-853, gnl|rheMac2|chr1 (9094919-9095065) | |
| 731-853, gnl|rn3|chr5 (169636520-169636382) | |
| 731-853, gnl|tetNig1|chr11 (3943045-3942909) | |
| 731-853, gnl|xenTro1|scaffold_46 (463644-463788) | |
| 946-1066, gnl|bosTau2|chr16 (35038067-35037947) | |
| 946-1066, gnl|Hg17|chr1 (6090960-6091142) | |
| 946-1066, gnl|Mm7|chr4 (151383953-151383834) | |
| 1155-1380, gnl|bosTau2|chr16 (35035457-35035248) | |
| 1155-1380, gnl|Hg17|chr1 (6092808-6093020) | |
| 1155-1380, gnl|Mm7|chr4 (151382669-151382447) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 731-853, gnl|bosTau2|chr16 (35039372-35039250) | |
| 731-853, gnl|canFam2|chr5 (63016023-63016169) | |
| 731-853, gnl|danRer3|chr23 (23560646-23560520) | |
| 731-853, gnl|dasNov1|scaffold_12367 (7874-7746) | |
| 731-853, gnl|echTel1|scaffold_319550 (39024-38876) | |
| 731-853, gnl|fr1|chrUn (251556278-251556127) | |
| 731-853, gnl|galGal2|chr21 (582664-582536) | |
| 731-853, gnl|hg17|chr1 (6089629-6089775) | |
| 731-853, gnl|Hg17|chr1 (6089648-6089770) | |
| 731-853, gnl|loxAfr1|scaffold_36356 (2552-2409) | |
| 731-853, gnl|mm7|chr4 (151384808-151384663) | |
| 731-853, gnl|Mm7|chr4 (151384788-151384666) | |
| 731-853, gnl|monDom2|scaffold_78 (2481504-2481364) | |
| 731-853, gnl|oryCun1|scaffold_101665 (8782-8638) | |
| 731-853, gnl|panTro1|chr1 (6013933-6014079) | |
| 731-853, gnl|rheMac2|chr1 (9094919-9095065) | |
| 731-853, gnl|rn3|chr5 (169636520-169636382) | |
| 731-853, gnl|tetNig1|chr11 (3943045-3942909) | |
| 731-853, gnl|xenTro1|scaffold_46 (463644-463788) | |
| 946-1066, gnl|bosTau2|chr16 (35038067-35037947) | |
| 946-1066, gnl|Hg17|chr1 (6090960-6091142) | |
| 946-1066, gnl|Mm7|chr4 (151383953-151383834) | |
| 1155-1380, gnl|bosTau2|chr16 (35035457-35035248) | |
| 1155-1380, gnl|Hg17|chr1 (6092808-6093020) | |
| 1155-1380, gnl|Mm7|chr4 (151382669-151382447) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| med (0.116252) | |
| cty (0.10408) |