Ss1.1-Pig4-TMW8032B03.3
|
GGAAGTGCCAGCCGCGCTCCCTGGGTCCCCCTTCTCCGACAGGGCTGTGCGGGGCGCCCG
GCACGCAGCACGAGCTCTGAAACGATGGCTCTTGTGTTCTCGCGCGCCTGCCAGGGTCGG
CCCGCTGTGATGATGGAAGAAGAGGAAGGGGCCGAGGAGCAGCAGCGATTCTCTTACCGA
CAGAGGCTGAAGGCAGCAGTTCACTACACCGTTGGCTGTCTTTGCGAGGAAGTGGCGTCG
GACAAAGACATGCCATTCAGCAAACAAACCATTGCGGCGATTTCGGAGGCGACCTTTCGA
CAGTGCGAAAATTTTGCCAAAGACCTTGAAATGTTTGCCAGACACGCAAAAAGGAGCACA
ATTAACACTGAAGACGTGAAGCTCTTAGCCAGGAGGAGTAATTCACTGCTAAAATACATC
ACAGAGATAAATGAAAACCTCGCTCAGTTTAACCTGGAACGCAAAGCAAAGAAGAAAAAG
AAGTCAGAGGATGAAAACAAAGATGCAGTGGAGCCAGGAGAGGCTGGTGTAGTGGAAATT
GAGAATTAACCTCTCACCATTTGGAAAAAACAGACTTCAGGTAGAACCACAGAAAACACA
GATTGCCAACGAAGGTAATTTTGAACGGGAAAGTGAGGATCAAAACAAAAAACAAAAACG
ACCAGGAGGCTTTTTGTACTGTATTCTCCGAGACATTGACTGCAAAAGCTTTTTTAAAAG
AGAACTAGAAACTTATGCAAAATACTTCCATGTTTTACTGAAGCATGTGAAAAAGCGTGT
GTTTGGTATGTACTGGAAATTGTATCTGTTGCAATTAATAAACTTGTGTTAGCAATTAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAAGTGCCAGCCGCGCTCCCTGGGTCCCCCTTCTCCGACAGGGCTGTGCGGGGCGCCCG
GCACGCAGCACGAGCTCTGAAACGATGGCTCTTGTGTTCTCGCGCGCCTGCCAGGGTCGG
CCCGCTGTGATGATGGAAGAAGAGGAAGGGGCCGAGGAGCAGCAGCGATTCTCTTACCGA
CAGAGGCTGAAGGCAGCAGTTCACTACACCGTTGGCTGTCTTTGCGAGGAAGTGGCGTCG
GACAAAGACATGCCATTCAGCAAACAAACCATTGCGGCGATTTCGGAGGCGACCTTTCGA
CAGTGCGAAAATTTTGCCAAAGACCTTGAAATGTTTGCCAGACACGCAAAAAGGAGCACA
ATTAACACTGAAGACGTGAAGCTCTTAGCCAGGAGGAGTAATTCACTGCTAAAATACATC
ACAGAGATAAATGAAAACCTCGCTCAGTTTAACCTGGAACGCAAAGCAAAGAAGAAAAAG
AAGTCAGAGGATGAAAACAAAGATGCAGTGGAGCCAGGAGAGGCTGGTGTAGTGGAAATT
GAGAATTAACCTCTCACCATTTGGAAAAAACAGACTTCAGGTAGAACCACAGAAAACACA
GATTGCCAACGAAGGTAATTTTGAACGGGAAAGTGAGGATCAAAACAAAAAACAAAAACG
ACCAGGAGGCTTTTTGTACTGTATTCTCCGAGACATTGACTGCAAAAGCTTTTTTAAAAG
AGAACTAGAAACTTATGCAAAATACTTCCATGTTTTACTGAAGCATGTGAAAAAGCGTGT
GTTTGGTATGTACTGGAAATTGTATCTGTTGCAATTAATAAACTTGTGTTAGCAATTAAA
AAAAAAAAAAAA
|
|
gi|56205685|emb|CAI19199.1| |
Protein identifier
|
gi|56205685|emb|CAI19199.1| |
|
181-305, gnl|bosTau2|chr16 (31865497-31865621) |
|
181-305, gnl|canFam2|chr2 (88370035-88369899) |
|
181-305, gnl|dasNov1|scaffold_76852 (9770-9636) |
|
181-305, gnl|echTel1|scaffold_420 (3657-3793) |
|
181-305, gnl|fr1|chrUn (102553468-102553606) |
|
181-305, gnl|hg17|chr1 (10428155-10428291) |
|
181-305, gnl|Hg17|chr1 (10428162-10428286) |
|
181-305, gnl|loxAfr1|scaffold_4842 (83662-83523) |
|
181-305, gnl|mm7|chr4 (148121937-148121800) |
|
181-305, gnl|Mm7|chr4 (148121927-148121803) |
|
181-305, gnl|oryCun1|scaffold_197884 (4257-4393) |
|
181-305, gnl|panTro1|chr1 (10624742-10624878) |
|
181-305, gnl|rheMac2|chr1 (13523056-13523192) |
|
181-305, gnl|rn3|chr5 (166217456-166217320) |
|
181-305, gnl|tetNig1|chr11 (4573857-4573729) |
|
181-305, gnl|xenTro1|scaffold_745 (585959-586090) |
| |
|
408-838, gnl|bosTau2|chr16 (31873364-31873792) |
|
408-838, gnl|Hg17|chr1 (10436587-10437030) |
|
408-838, gnl|Mm7|chr4 (148118471-148118108) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
181-305, gnl|bosTau2|chr16 (31865497-31865621) |
|
181-305, gnl|canFam2|chr2 (88370035-88369899) |
|
181-305, gnl|dasNov1|scaffold_76852 (9770-9636) |
|
181-305, gnl|echTel1|scaffold_420 (3657-3793) |
|
181-305, gnl|fr1|chrUn (102553468-102553606) |
|
181-305, gnl|hg17|chr1 (10428155-10428291) |
|
181-305, gnl|Hg17|chr1 (10428162-10428286) |
|
181-305, gnl|loxAfr1|scaffold_4842 (83662-83523) |
|
181-305, gnl|mm7|chr4 (148121937-148121800) |
|
181-305, gnl|Mm7|chr4 (148121927-148121803) |
|
181-305, gnl|oryCun1|scaffold_197884 (4257-4393) |
|
181-305, gnl|panTro1|chr1 (10624742-10624878) |
|
181-305, gnl|rheMac2|chr1 (13523056-13523192) |
|
181-305, gnl|rn3|chr5 (166217456-166217320) |
|
181-305, gnl|tetNig1|chr11 (4573857-4573729) |
|
181-305, gnl|xenTro1|scaffold_745 (585959-586090) |
| |
|
408-838, gnl|bosTau2|chr16 (31873364-31873792) |
|
408-838, gnl|Hg17|chr1 (10436587-10437030) |
|
408-838, gnl|Mm7|chr4 (148118471-148118108) |
|
mgp (0.461361) |
|
tes (0.415628) |
|
cmu (0.372787) |
|
eye (0.341006) |
|
cte (0.29274) |
|
fce (0.271592) |
|
pan (0.23596) |
|
spc (0.226732) |
|
sag (0.182715) |
|
rec (0.17307) |
|
lnt (0.142308) |
|
che (0.136314) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
nbm (0.0993246) |
|
mgp (0.461361) |
|
tes (0.415628) |
|
cmu (0.372787) |
|
eye (0.341006) |
|
cte (0.29274) |
|
fce (0.271592) |
|
pan (0.23596) |
|
spc (0.226732) |
|
sag (0.182715) |
|
rec (0.17307) |
|
lnt (0.142308) |
|
che (0.136314) |
|
lyg (0.133103) |
|
nmm (0.132802) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
nbm (0.0993246) |
