Ss1.1-Pig4-TMW8032B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGACTCAGAAAGTGGCGTTTACATGCGATTCATGAGGTCACACAAGTGTTACGACAT CGTTCCAACCAGCTCCAAGCTTGTTGTCTTTGATACCACGTTGCAAGTTAAAAAGGCCTT CTTTGCCTTGGTTGACCCCAGCACTCGAGCAGCGCCTCTGTGGGAGAGTAAAAAACAAAG TTTTGTAGGAATGCTAACAATTACAGATTTCATTAATATACTGCATAGATACTATAAATC GCCCATGGTACAGATTTATGAATTAGAGGAACATAAGATTGAAACATGGAGGGAGCTTTA TTTACAAGAAACATTTAAGCCTTTAGTGAATATATCTCCAGATGCAAGCCTCTTCGATGC TGTACACTCGTTGATCAAAAATAAAATCCACAGATTGCCAGTTATTGACCCCGTCAGTGG GAATGCCCTTTATATACTTACCCACAAAAGAATCCTCAAGTTCCTCCAGCTTTTTATGTC TGACATGCCAAAGCCTGCCTTCATGAAGCAGAACCTGGACGCGCTGGGCATCGGGACCTA CGACAACATCGCCTTCATACACCCGGACACGCCAATCATCAGAGCCTTGAACGTCTTCGT GGAAAGGCGGGTGTCGGCCTTGCCCGTGGTGGACGAGTCAGGAAAAGTTGTAGATATTTA TTCCAAATTTGATGTAATTAACCTTGCTGCTGAGAAAACATACAACAACCTAGACATCAC GGTGACCCAGGCCCTTCAGCACCGGTCGCAGTATTTCGAAGGCGTTGTCAAGTGCAGTAA GCTGGAGATCCTGGAGACCATCGTGGACAGGATAGTGAGGGCCGAGGTCCATCGGCTGGT GGTAGTAAATGAAGCAGATAGTATCGTGGGTATTATTTCCCTGTCGGACATTCTGCAAGC CCTGATCCTCACCCCCGCAGGTGCCAAACAGAAAGAGACAGAAACCGAATGACAGCCATG AGTGCGGGAGCCTTCGCAGGAGAACTTGAACAAGATCCTGGGTCACGCTTTGCCTCATGA ACACGGACCGCGAAAGAACAGAGGAAAACGGCTGAGAATGTGTATCCGGGTTTAGTGATG GGTATTTTTTCCAGTGATGTTGAAACTAAGCATATAAAAGAGAAAGATTTTATGTGTCTG AAGATTCAAGCTCACATTAAAAGACTGTTTTCAGACCACGGTCTGAAAGATCTCAATGCT GTATGTTATTAAAGTGCACTGTGTCCTGAATTTTTATTGTTTTTCATTTTAAAGAATTCA CTGGTATCTAGCAGGTGATATGGCATAAGGCAAGCGTGTGGCACATTCAGATCCAGTGCC TTATGTCCAGCAGCGACAGGCCTTCCCTACCGCCTGTCGCAGCTTGTGAAGTGATACTGC TGGAGTGGGAACGTCTCTGAACCTTTACCAAATCAGTTTGTTTCATTAGATCTGTTGAAC AGCTGTAATTTGAATATGAATACTTACTTTATAAAACTTTAATGATGGTTTTATGTTTAA GTGTTCCGTTCTGAACTACAGTGTAAATGACTGATCTACAACAGCTTTATTTATTTTTAC TTTCGTGCAGTTTTTTTACACCTTTTGGTGGGTAAACTTCCCCATGCCCATTAATAAAGC ATTGGTTTATTAATTTTAAAAGGGCAAATTTCTCATTATTTAAGTTTGGACCTGGAAAGG ATATGACTTCTCAAAGAGCCACTGTTAGGCTTTAAAAGCTGAAGTTTCTAACAGCACGAG TGAGAGCCTGCTCTGCAGGGCTGCAGACCAAGTGCCGGGAAGATGTCTATTTTTTCTTGT GTTTTTACATGAAAATCATGATGTTTGTGTGACTGCTGATGCGATTGTTTTGTAAATTGT ACTGTGGCATATACAGTATTGTCATACAGTTGAGGAGAAACACAATGTTTCCTAATGTAA GTGCTCTGAAAATGTTGACACTGTATATATATATATGAGTATAGTTTGGTTTTTTGTTTT TGGGGGTTTTTTGCAGAATGAAAAATTAAAATAAATCTTACTATCGGCAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGACTCAGAAAGTGGCGTTTACATGCGATTCATGAGGTCACACAAGTGTTACGACAT CGTTCCAACCAGCTCCAAGCTTGTTGTCTTTGATACCACGTTGCAAGTTAAAAAGGCCTT CTTTGCCTTGGTTGACCCCAGCACTCGAGCAGCGCCTCTGTGGGAGAGTAAAAAACAAAG TTTTGTAGGAATGCTAACAATTACAGATTTCATTAATATACTGCATAGATACTATAAATC GCCCATGGTACAGATTTATGAATTAGAGGAACATAAGATTGAAACATGGAGGGAGCTTTA TTTACAAGAAACATTTAAGCCTTTAGTGAATATATCTCCAGATGCAAGCCTCTTCGATGC TGTACACTCGTTGATCAAAAATAAAATCCACAGATTGCCAGTTATTGACCCCGTCAGTGG GAATGCCCTTTATATACTTACCCACAAAAGAATCCTCAAGTTCCTCCAGCTTTTTATGTC TGACATGCCAAAGCCTGCCTTCATGAAGCAGAACCTGGACGCGCTGGGCATCGGGACCTA CGACAACATCGCCTTCATACACCCGGACACGCCAATCATCAGAGCCTTGAACGTCTTCGT GGAAAGGCGGGTGTCGGCCTTGCCCGTGGTGGACGAGTCAGGAAAAGTTGTAGATATTTA TTCCAAATTTGATGTAATTAACCTTGCTGCTGAGAAAACATACAACAACCTAGACATCAC GGTGACCCAGGCCCTTCAGCACCGGTCGCAGTATTTCGAAGGCGTTGTCAAGTGCAGTAA GCTGGAGATCCTGGAGACCATCGTGGACAGGATAGTGAGGGCCGAGGTCCATCGGCTGGT GGTAGTAAATGAAGCAGATAGTATCGTGGGTATTATTTCCCTGTCGGACATTCTGCAAGC CCTGATCCTCACCCCCGCAGGTGCCAAACAGAAAGAGACAGAAACCGAATGACAGCCATG AGTGCGGGAGCCTTCGCAGGAGAACTTGAACAAGATCCTGGGTCACGCTTTGCCTCATGA ACACGGACCGCGAAAGAACAGAGGAAAACGGCTGAGAATGTGTATCCGGGTTTAGTGATG GGTATTTTTTCCAGTGATGTTGAAACTAAGCATATAAAAGAGAAAGATTTTATGTGTCTG AAGATTCAAGCTCACATTAAAAGACTGTTTTCAGACCACGGTCTGAAAGATCTCAATGCT GTATGTTATTAAAGTGCACTGTGTCCTGAATTTTTATTGTTTTTCATTTTAAAGAATTCA CTGGTATCTAGCAGGTGATATGGCATAAGGCAAGCGTGTGGCACATTCAGATCCAGTGCC TTATGTCCAGCAGCGACAGGCCTTCCCTACCGCCTGTCGCAGCTTGTGAAGTGATACTGC TGGAGTGGGAACGTCTCTGAACCTTTACCAAATCAGTTTGTTTCATTAGATCTGTTGAAC AGCTGTAATTTGAATATGAATACTTACTTTATAAAACTTTAATGATGGTTTTATGTTTAA GTGTTCCGTTCTGAACTACAGTGTAAATGACTGATCTACAACAGCTTTATTTATTTTTAC TTTCGTGCAGTTTTTTTACACCTTTTGGTGGGTAAACTTCCCCATGCCCATTAATAAAGC ATTGGTTTATTAATTTTAAAAGGGCAAATTTCTCATTATTTAAGTTTGGACCTGGAAAGG ATATGACTTCTCAAAGAGCCACTGTTAGGCTTTAAAAGCTGAAGTTTCTAACAGCACGAG TGAGAGCCTGCTCTGCAGGGCTGCAGACCAAGTGCCGGGAAGATGTCTATTTTTTCTTGT GTTTTTACATGAAAATCATGATGTTTGTGTGACTGCTGATGCGATTGTTTTGTAAATTGT ACTGTGGCATATACAGTATTGTCATACAGTTGAGGAGAAACACAATGTTTCCTAATGTAA GTGCTCTGAAAATGTTGACACTGTATATATATATATGAGTATAGTTTGGTTTTTTGTTTT TGGGGGTTTTTTGCAGAATGAAAAATTAAAATAAATCTTACTATCGGCAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr4 (63997145-63997252) | |
| 1-108, gnl|canFam2|chr16 (18508987-18509146) | |
| 1-108, gnl|danRer3|chr2 (5788579-5788716) | |
| 1-108, gnl|dasNov1|scaffold_12015 (40254-40102) | |
| 1-108, gnl|echTel1|scaffold_287290 (31631-31490) | |
| 1-108, gnl|fr1|chrUn (290209027-290209152) | |
| 1-108, gnl|galGal2|chr2 (5769992-5770129) | |
| 1-108, gnl|hg17|chr7 (150730069-150730226) | |
| 1-108, gnl|Hg17|chr7 (150730184-150730077) | |
| 1-108, gnl|loxAfr1|scaffold_9080 (1223-1385) | |
| 1-108, gnl|mm7|chr5 (23929565-23929713) | |
| 1-108, gnl|Mm7|chr5 (23929680-23929573) | |
| 1-108, gnl|monDom2|scaffold_7 (11924970-11925114) | |
| 1-108, gnl|oryCun1|scaffold_128238 (33810-33655) | |
| 1-108, gnl|panTro1|chr6_random (16192356-16192199) | |
| 1-108, gnl|rheMac2|chr3 (188547787-188547941) | |
| 1-108, gnl|rn3|chr4 (5644090-5643942) | |
| 1-108, gnl|tetNig1|chr15 (6483369-6483244) | |
| 1-108, gnl|xenTro1|scaffold_57 (89844-89991) | |
| 347-475, gnl|bosTau2|chr4 (64024603-64024731) | |
| 347-475, gnl|canFam2|chr16 (18483916-18484062) | |
| 347-475, gnl|danRer3|chr2 (5772747-5772892) | |
| 347-475, gnl|dasNov1|scaffold_31579 (44536-44676) | |
| 347-475, gnl|echTel1|scaffold_287290 (44828-44682) | |
| 347-475, gnl|fr1|chrUn (290208111-290208246) | |
| 347-475, gnl|galGal2|chr2 (5752794-5752940) | |
| 347-475, gnl|hg17|chr7 (150703441-150703587) | |
| 347-475, gnl|Hg17|chr7 (150703578-150703450) | |
| 347-475, gnl|loxAfr1|scaffold_36622 (9290-9144) | |
| 347-475, gnl|mm7|chr5 (23914368-23914514) | |
| 347-475, gnl|Mm7|chr5 (23914505-23914377) | |
| 347-475, gnl|monDom2|scaffold_7 (11900818-11900963) | |
| 347-475, gnl|oryCun1|scaffold_128238 (59245-59099) | |
| 347-475, gnl|panTro1|chr6_random (16219101-16218955) | |
| 347-475, gnl|rheMac2|chr3 (188518486-188518632) | |
| 347-475, gnl|rn3|chr4 (5657037-5656891) | |
| 347-475, gnl|tetNig1|chr15 (6484560-6484425) | |
| 347-475, gnl|xenTro1|scaffold_57 (79125-79271) | |
| 476-642, gnl|bosTau2|chr4 (64027454-64027620) | |
| 476-642, gnl|canFam2|chr16 (18480800-18480996) | |
| 476-642, gnl|danRer3|chr2 (5768822-5768993) | |
| 476-642, gnl|dasNov1|scaffold_31579 (44258-44439) | |
| 476-642, gnl|echTel1|scaffold_287290 (47763-47552) | |
| 476-642, gnl|fr1|chrUn (290207791-290207980) | |
| 476-642, gnl|galGal2|chr2 (5751807-5752013) | |
| 476-642, gnl|hg17|chr7 (150700436-150700648) | |
| 476-642, gnl|Hg17|chr7 (150700619-150700453) | |
| 476-642, gnl|loxAfr1|scaffold_36622 (12510-12296) | |
| 476-642, gnl|mm7|chr5 (23911979-23912182) | |
| 476-642, gnl|Mm7|chr5 (23912152-23911986) | |
| 476-642, gnl|monDom2|scaffold_7 (11897707-11897920) | |
| 476-642, gnl|oryCun1|scaffold_128238 (62238-62025) | |
| 476-642, gnl|panTro1|chr6_random (16222096-16221884) | |
| 476-642, gnl|rheMac2|chr3 (188515476-188515689) | |
| 476-642, gnl|rn3|chr4 (5659361-5659148) | |
| 476-642, gnl|tetNig1|chr15 (6484892-6484706) | |
| 476-642, gnl|xenTro1|scaffold_57 (74579-74791) | |
| 680-838, gnl|bosTau2|chr4 (64029561-64029719) | |
| 680-838, gnl|Hg17|chr7 (150698958-150698800) | |
| 680-838, gnl|Mm7|chr5 (23909770-23909618) | |
| 917-1944, gnl|bosTau2|chr4 (64037006-64038062) | |
| 917-1944, gnl|Hg17|chr7 (150691970-150690948) | |
| 917-1944, gnl|Mm7|chr5 (23904384-23903348) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr4 (63997145-63997252) | |
| 1-108, gnl|canFam2|chr16 (18508987-18509146) | |
| 1-108, gnl|danRer3|chr2 (5788579-5788716) | |
| 1-108, gnl|dasNov1|scaffold_12015 (40254-40102) | |
| 1-108, gnl|echTel1|scaffold_287290 (31631-31490) | |
| 1-108, gnl|fr1|chrUn (290209027-290209152) | |
| 1-108, gnl|galGal2|chr2 (5769992-5770129) | |
| 1-108, gnl|hg17|chr7 (150730069-150730226) | |
| 1-108, gnl|Hg17|chr7 (150730184-150730077) | |
| 1-108, gnl|loxAfr1|scaffold_9080 (1223-1385) | |
| 1-108, gnl|mm7|chr5 (23929565-23929713) | |
| 1-108, gnl|Mm7|chr5 (23929680-23929573) | |
| 1-108, gnl|monDom2|scaffold_7 (11924970-11925114) | |
| 1-108, gnl|oryCun1|scaffold_128238 (33810-33655) | |
| 1-108, gnl|panTro1|chr6_random (16192356-16192199) | |
| 1-108, gnl|rheMac2|chr3 (188547787-188547941) | |
| 1-108, gnl|rn3|chr4 (5644090-5643942) | |
| 1-108, gnl|tetNig1|chr15 (6483369-6483244) | |
| 1-108, gnl|xenTro1|scaffold_57 (89844-89991) | |
| 347-475, gnl|bosTau2|chr4 (64024603-64024731) | |
| 347-475, gnl|canFam2|chr16 (18483916-18484062) | |
| 347-475, gnl|danRer3|chr2 (5772747-5772892) | |
| 347-475, gnl|dasNov1|scaffold_31579 (44536-44676) | |
| 347-475, gnl|echTel1|scaffold_287290 (44828-44682) | |
| 347-475, gnl|fr1|chrUn (290208111-290208246) | |
| 347-475, gnl|galGal2|chr2 (5752794-5752940) | |
| 347-475, gnl|hg17|chr7 (150703441-150703587) | |
| 347-475, gnl|Hg17|chr7 (150703578-150703450) | |
| 347-475, gnl|loxAfr1|scaffold_36622 (9290-9144) | |
| 347-475, gnl|mm7|chr5 (23914368-23914514) | |
| 347-475, gnl|Mm7|chr5 (23914505-23914377) | |
| 347-475, gnl|monDom2|scaffold_7 (11900818-11900963) | |
| 347-475, gnl|oryCun1|scaffold_128238 (59245-59099) | |
| 347-475, gnl|panTro1|chr6_random (16219101-16218955) | |
| 347-475, gnl|rheMac2|chr3 (188518486-188518632) | |
| 347-475, gnl|rn3|chr4 (5657037-5656891) | |
| 347-475, gnl|tetNig1|chr15 (6484560-6484425) | |
| 347-475, gnl|xenTro1|scaffold_57 (79125-79271) | |
| 476-642, gnl|bosTau2|chr4 (64027454-64027620) | |
| 476-642, gnl|canFam2|chr16 (18480800-18480996) | |
| 476-642, gnl|danRer3|chr2 (5768822-5768993) | |
| 476-642, gnl|dasNov1|scaffold_31579 (44258-44439) | |
| 476-642, gnl|echTel1|scaffold_287290 (47763-47552) | |
| 476-642, gnl|fr1|chrUn (290207791-290207980) | |
| 476-642, gnl|galGal2|chr2 (5751807-5752013) | |
| 476-642, gnl|hg17|chr7 (150700436-150700648) | |
| 476-642, gnl|Hg17|chr7 (150700619-150700453) | |
| 476-642, gnl|loxAfr1|scaffold_36622 (12510-12296) | |
| 476-642, gnl|mm7|chr5 (23911979-23912182) | |
| 476-642, gnl|Mm7|chr5 (23912152-23911986) | |
| 476-642, gnl|monDom2|scaffold_7 (11897707-11897920) | |
| 476-642, gnl|oryCun1|scaffold_128238 (62238-62025) | |
| 476-642, gnl|panTro1|chr6_random (16222096-16221884) | |
| 476-642, gnl|rheMac2|chr3 (188515476-188515689) | |
| 476-642, gnl|rn3|chr4 (5659361-5659148) | |
| 476-642, gnl|tetNig1|chr15 (6484892-6484706) | |
| 476-642, gnl|xenTro1|scaffold_57 (74579-74791) | |
| 680-838, gnl|bosTau2|chr4 (64029561-64029719) | |
| 680-838, gnl|Hg17|chr7 (150698958-150698800) | |
| 680-838, gnl|Mm7|chr5 (23909770-23909618) | |
| 917-1944, gnl|bosTau2|chr4 (64037006-64038062) | |
| 917-1944, gnl|Hg17|chr7 (150691970-150690948) | |
| 917-1944, gnl|Mm7|chr5 (23904384-23903348) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| cmu (0.55918) | |
| sag (0.36543) | |
| sto (0.359648) | |
| gul (0.355177) | |
| spc (0.340097) | |
| cut (0.339847) | |
| fce (0.271592) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ldo (0.0970026) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.55918) | |
| sag (0.36543) | |
| sto (0.359648) | |
| gul (0.355177) | |
| spc (0.340097) | |
| cut (0.339847) | |
| fce (0.271592) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ldo (0.0970026) |