Ss1.1-Pig4-TMW8032B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTTCGGTTGGTCGGCTGCGGACCACGGCGCAGACGGTTTTTGCTGCCCAGGCAGTGAG AGGTCTGAGCCCGCCAACTGCTGCCGCGCAGCCCTGGGCAGCAATGGCACTTAAGGACTA CGCTCTCGAGAAAGAAAAAGTGAAGAAGTTTCTACAGGAGTTTTACCAAGATGACGAACT TGGCAAGAAGCAGTTCAAGTATGGGAACCAGTTGGTTCGATTGGCTCATCGGGAGCAAGT GGCAATGTACATAGACCTAGACGACGTCACTGAGGATGATCCTGAGTTGGTGGACTCCAT TTGTGAGAACACCAAGCGCTATGCCAGGCTCTTCGCTGATGCTGTGCAAGAGCTGCTGCC TCAGTACAAGGAGAGGGAGGTGGTAAATAAAGATGTCCTGGATGTTTACATTGAGCACCG GCTGATGATGGAGCAGCGCAGCCGGGACCCAGGGGCAGCCCGGAGTCCCCAAAACCAGTA CCCTCCTGAACTGATGCGCAGATTCGAGCTGTATTTTCAAGGCCCGAGCAGTAGCAAACC TCGTGTGATCCGTGAAGTACGGGCTGACTCTGTGGGGAAATTGGTAACTGTGCGTGGAAT TGTCACTCGCGTTTCTGAAGTCAAACCCAGAATGGTGGTGGCCACTTACACTTGTGACCA GTGTGGGGCAGAGACCTACCAGCCGATCCAGTCTCCCACTTTCATGCCTCTGATCATGTG CCCAAGCCAGGAGTGCCAGACCAACCGCTCAGGAGGGCGACTGTATCTTCAGACACGTGG CTCCAAATTCATCAAATTCCAGGAGATGAAGATGCAAGAACATAGTGACCAAGTGCCCGT GGGAAACATCCCTCGCAGCATCACAGTGCTGGTGGAAGGAGAGAACACGAGGATCGCCCA GCCTGGGGATCATGTCAGTGTCACCGGTATCTTCTTGCCGATCCTGCGCACCGGGTTCCG ACAGGTGGTCCAGGGTTTACTCTCAGAAACTTACCTGGAAGCCCATCGGATTGTGAAGAT GAGTAAGAGTGAGGATGATGAGTCTGGGGCTGGAGAGTTGAGCAGGGAAGAACTGAGACA AATCGCAGAGGAGGATTTCTATGAAAAGCTGGCAGCCTCCATTGCCCCGGAAATATACGG CCATGAAGACGTGAAGAAGGCACTGCTGCTCCTGCTGGTGGGAGGGGTGGACCAGTCTCC TCGAGGCATGAAGATCAGGGGCAACATCAACATCTGTCTGATGGGGGATCCTGGAGTGGC CAAGTCTCAGCTCCTGTCTTACATTGATCGCCTGGCCCCCCGCAGCCAGTACACAACAGG CCGAGGTTCCTCGGGAGTGGGGCTCACGGCCGCCGTGCTGAGAGACTCCGTGAGTGGAGA GCTGACCTTGGAGGGTGGCGCCCTCGTGCTGGCCGACCAGGGCGTCTGCTGCATTGATGA GTTTGACAAGATGGCGGAAGCTGACCGCACAGCCATCCACGAGGTCATGGAGCAGCAAAC CATCTCCATTGCCAAGGCAGGCATTCTCACAACACTTAATGCCCGCTGCTCTATCCTGGC TGCTGCCAACCCTGCCTACGGACGCTACAACCCTCGCCGGAGCCTGGAGCAGAACATACA GCTTCCTGCGGCTCTGCTCTCCCGATTTGACCTCCTCTGGCTAATCCAGGACCGGCCTGA CCGAGACAATGACTTGAGGTTGGCCCAGCACATCACCTACGTGCACCAGCACAGCCGGCA GCCCCCTGCCCAGTTTGAACCTTTGGATATGAAGCTTATGAGGCGTTACATAGCCATGTG CCGGGAGAAGCAGCCCACCGTGCCCGAGTCCCTGGCTGACTACATCACCGCCGCATACGT GGAGATGCGGCGAGAGGCCTGGGCTAGTAAGGATGCCACGTACACTTCCGCCCGGACCCT GCTGGCTATCCTGCGACTGTCCACGGCGCTGGCGCGTCTGCGGATGGTGGACACTGTGGA GAAGGAAGACGTGAACGAAGCCATAAGGCTGATGGAGATGTCCAAGGACTCGCTTCTGGG TGACAAGGGCCAGACAGCTAGGACTCAGAGACCGGCAGATGTGATATTTGCCACTGTCCG TGAGTTGGTTTCAGAGGGCCGAAGTGTCCGATTTTCTGAGGCAGAGCAGCGCTGCATATC TCGGGGCTTCACACCTGCTCAGTTCCAGGCAGCCCTAGATGAGTATGAGGAGCTAAACGT CTGGCAGGTCAATACCGCCCGGACCCGGATCACTTTTGTCTGATTCCGACCTCTTGAGAC ACTGGGGTCTGTCTACTGGGCTTACCGTGCTAACCCCCCTTCCTTTAAAGGCCTAATGAT GCCCTGGGGGGTGGGGAGAGGCCCAGCTGCACTTGTATTCATTCCTTTTGCTAATAAAGT GTGTAGATTTGCTGCCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTTCGGTTGGTCGGCTGCGGACCACGGCGCAGACGGTTTTTGCTGCCCAGGCAGTGAG AGGTCTGAGCCCGCCAACTGCTGCCGCGCAGCCCTGGGCAGCAATGGCACTTAAGGACTA CGCTCTCGAGAAAGAAAAAGTGAAGAAGTTTCTACAGGAGTTTTACCAAGATGACGAACT TGGCAAGAAGCAGTTCAAGTATGGGAACCAGTTGGTTCGATTGGCTCATCGGGAGCAAGT GGCAATGTACATAGACCTAGACGACGTCACTGAGGATGATCCTGAGTTGGTGGACTCCAT TTGTGAGAACACCAAGCGCTATGCCAGGCTCTTCGCTGATGCTGTGCAAGAGCTGCTGCC TCAGTACAAGGAGAGGGAGGTGGTAAATAAAGATGTCCTGGATGTTTACATTGAGCACCG GCTGATGATGGAGCAGCGCAGCCGGGACCCAGGGGCAGCCCGGAGTCCCCAAAACCAGTA CCCTCCTGAACTGATGCGCAGATTCGAGCTGTATTTTCAAGGCCCGAGCAGTAGCAAACC TCGTGTGATCCGTGAAGTACGGGCTGACTCTGTGGGGAAATTGGTAACTGTGCGTGGAAT TGTCACTCGCGTTTCTGAAGTCAAACCCAGAATGGTGGTGGCCACTTACACTTGTGACCA GTGTGGGGCAGAGACCTACCAGCCGATCCAGTCTCCCACTTTCATGCCTCTGATCATGTG CCCAAGCCAGGAGTGCCAGACCAACCGCTCAGGAGGGCGACTGTATCTTCAGACACGTGG CTCCAAATTCATCAAATTCCAGGAGATGAAGATGCAAGAACATAGTGACCAAGTGCCCGT GGGAAACATCCCTCGCAGCATCACAGTGCTGGTGGAAGGAGAGAACACGAGGATCGCCCA GCCTGGGGATCATGTCAGTGTCACCGGTATCTTCTTGCCGATCCTGCGCACCGGGTTCCG ACAGGTGGTCCAGGGTTTACTCTCAGAAACTTACCTGGAAGCCCATCGGATTGTGAAGAT GAGTAAGAGTGAGGATGATGAGTCTGGGGCTGGAGAGTTGAGCAGGGAAGAACTGAGACA AATCGCAGAGGAGGATTTCTATGAAAAGCTGGCAGCCTCCATTGCCCCGGAAATATACGG CCATGAAGACGTGAAGAAGGCACTGCTGCTCCTGCTGGTGGGAGGGGTGGACCAGTCTCC TCGAGGCATGAAGATCAGGGGCAACATCAACATCTGTCTGATGGGGGATCCTGGAGTGGC CAAGTCTCAGCTCCTGTCTTACATTGATCGCCTGGCCCCCCGCAGCCAGTACACAACAGG CCGAGGTTCCTCGGGAGTGGGGCTCACGGCCGCCGTGCTGAGAGACTCCGTGAGTGGAGA GCTGACCTTGGAGGGTGGCGCCCTCGTGCTGGCCGACCAGGGCGTCTGCTGCATTGATGA GTTTGACAAGATGGCGGAAGCTGACCGCACAGCCATCCACGAGGTCATGGAGCAGCAAAC CATCTCCATTGCCAAGGCAGGCATTCTCACAACACTTAATGCCCGCTGCTCTATCCTGGC TGCTGCCAACCCTGCCTACGGACGCTACAACCCTCGCCGGAGCCTGGAGCAGAACATACA GCTTCCTGCGGCTCTGCTCTCCCGATTTGACCTCCTCTGGCTAATCCAGGACCGGCCTGA CCGAGACAATGACTTGAGGTTGGCCCAGCACATCACCTACGTGCACCAGCACAGCCGGCA GCCCCCTGCCCAGTTTGAACCTTTGGATATGAAGCTTATGAGGCGTTACATAGCCATGTG CCGGGAGAAGCAGCCCACCGTGCCCGAGTCCCTGGCTGACTACATCACCGCCGCATACGT GGAGATGCGGCGAGAGGCCTGGGCTAGTAAGGATGCCACGTACACTTCCGCCCGGACCCT GCTGGCTATCCTGCGACTGTCCACGGCGCTGGCGCGTCTGCGGATGGTGGACACTGTGGA GAAGGAAGACGTGAACGAAGCCATAAGGCTGATGGAGATGTCCAAGGACTCGCTTCTGGG TGACAAGGGCCAGACAGCTAGGACTCAGAGACCGGCAGATGTGATATTTGCCACTGTCCG TGAGTTGGTTTCAGAGGGCCGAAGTGTCCGATTTTCTGAGGCAGAGCAGCGCTGCATATC TCGGGGCTTCACACCTGCTCAGTTCCAGGCAGCCCTAGATGAGTATGAGGAGCTAAACGT CTGGCAGGTCAATACCGCCCGGACCCGGATCACTTTTGTCTGATTCCGACCTCTTGAGAC ACTGGGGTCTGTCTACTGGGCTTACCGTGCTAACCCCCCTTCCTTTAAAGGCCTAATGAT GCCCTGGGGGGTGGGGAGAGGCCCAGCTGCACTTGTATTCATTCCTTTTGCTAATAAAGT GTGTAGATTTGCTGCCTTCTGTTAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1407-1523, + strand, RNAz p=0.947712 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1407-1523, + strand, RNAz p=0.947712 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 1-134, gnl|bosTau2|chr25 (33184138-33184004) | |
| 1-134, gnl|Hg17|chr7 (99343671-99343538) | |
| 1-134, gnl|Mm7|chr5 (137117380-137117248) | |
| 214-387, gnl|bosTau2|chr25 (33182184-33182011) | |
| 214-387, gnl|Hg17|chr7 (99342028-99341839) | |
| 214-387, gnl|Mm7|chr5 (137115247-137115077) | |
| 506-685, gnl|bosTau2|chr25 (33181652-33181473) | |
| 506-685, gnl|canFam2|chr6 (12501649-12501526) | |
| 506-685, gnl|danRer3|chr19 (59523191-59523068) | |
| 506-685, gnl|dasNov1|scaffold_41458 (11209-11092) | |
| 506-685, gnl|echTel1|scaffold_294936 (41798-41921) | |
| 506-685, gnl|fr1|chrUn (263131037-263130917) | |
| 506-685, gnl|hg17|chr7 (99341285-99341408) | |
| 506-685, gnl|Hg17|chr7 (99341476-99341297) | |
| 506-685, gnl|loxAfr1|scaffold_113792 (537-414) | |
| 506-685, gnl|mm7|chr5 (137114608-137114731) | |
| 506-685, gnl|Mm7|chr5 (137114799-137114620) | |
| 506-685, gnl|monDom2|scaffold_66 (1976343-1976479) | |
| 506-685, gnl|oryCun1|scaffold_189975 (5764-5645) | |
| 506-685, gnl|panTro1|chr6 (101124413-101124536) | |
| 506-685, gnl|rheMac2|chr3 (47377870-47377993) | |
| 506-685, gnl|rn3|chr12 (17601399-17601522) | |
| 506-685, gnl|tetNig1|chr1 (5479987-5480100) | |
| 506-685, gnl|xenTro1|scaffold_814 (526894-527019) | |
| 821-974, gnl|bosTau2|chr25 (33180742-33180589) | |
| 821-974, gnl|canFam2|chr6 (12502541-12502383) | |
| 821-974, gnl|danRer3|chr19 (59524100-59523945) | |
| 821-974, gnl|echTel1|scaffold_294936 (40897-41055) | |
| 821-974, gnl|fr1|chrUn (263131483-263131325) | |
| 821-974, gnl|hg17|chr7 (99340408-99340566) | |
| 821-974, gnl|Hg17|chr7 (99340567-99340414) | |
| 821-974, gnl|loxAfr1|scaffold_113792 (1438-1280) | |
| 821-974, gnl|mm7|chr5 (137113849-137114005) | |
| 821-974, gnl|Mm7|chr5 (137114023-137113853) | |
| 821-974, gnl|monDom2|scaffold_66 (1975412-1975568) | |
| 821-974, gnl|oryCun1|scaffold_189975 (6574-6416) | |
| 821-974, gnl|panTro1|chr6 (101123536-101123694) | |
| 821-974, gnl|rheMac2|chr3 (47376994-47377152) | |
| 821-974, gnl|rn3|chr12 (17600536-17600692) | |
| 821-974, gnl|tetNig1|chr1 (5479513-5479671) | |
| 821-974, gnl|xenTro1|scaffold_814 (526017-526175) | |
| 1211-1523, gnl|bosTau2|chr14 (9832315-9832002) | |
| 1211-1523, gnl|Hg17|chr8 (49045684-49045997) | |
| 1211-1523, gnl|Mm7|chr16 (15169246-15168936) | |
| 1781-1957, gnl|bosTau2|chr25 (33178254-33178078) | |
| 1781-1957, gnl|canFam2|chr6 (12505228-12505035) | |
| 1781-1957, gnl|danRer3|chr19 (59526368-59526186) | |
| 1781-1957, gnl|dasNov1|scaffold_41458 (14722-14518) | |
| 1781-1957, gnl|echTel1|scaffold_294936 (37793-37993) | |
| 1781-1957, gnl|fr1|chrUn (263133152-263132950) | |
| 1781-1957, gnl|hg17|chr7 (99336433-99336628) | |
| 1781-1957, gnl|Hg17|chr7 (99336617-99336441) | |
| 1781-1957, gnl|loxAfr1|scaffold_113792 (4852-4653) | |
| 1781-1957, gnl|mm7|chr5 (137111411-137111614) | |
| 1781-1957, gnl|Mm7|chr5 (137111601-137111425) | |
| 1781-1957, gnl|monDom2|scaffold_66 (1972572-1972786) | |
| 1781-1957, gnl|oryCun1|scaffold_193147 (5972-6177) | |
| 1781-1957, gnl|panTro1|chr6 (101118956-101119151) | |
| 1781-1957, gnl|rheMac2|chr3 (47373313-47373508) | |
| 1781-1957, gnl|rn3|chr12 (17598057-17598260) | |
| 1781-1957, gnl|tetNig1|chr1 (5477926-5478109) | |
| 1781-1957, gnl|xenTro1|scaffold_2315 (6170-5978) | |
| 2055-2427, gnl|bosTau2|chr25 (33177105-33176722) | |
| 2055-2427, gnl|Hg17|chr7 (99335414-99335023) | |
| 2055-2427, gnl|Mm7|chr5 (137110447-137110106) | |
| 2059-2402, gnl|bosTau2|chr10 (95407-95059) | |
| 2059-2402, gnl|Hg17|chr7 (99335410-99335067) | |
| 2059-2402, gnl|Mm7|chr5 (137110444-137110131) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-134, gnl|bosTau2|chr25 (33184138-33184004) | |
| 1-134, gnl|Hg17|chr7 (99343671-99343538) | |
| 1-134, gnl|Mm7|chr5 (137117380-137117248) | |
| 214-387, gnl|bosTau2|chr25 (33182184-33182011) | |
| 214-387, gnl|Hg17|chr7 (99342028-99341839) | |
| 214-387, gnl|Mm7|chr5 (137115247-137115077) | |
| 506-685, gnl|bosTau2|chr25 (33181652-33181473) | |
| 506-685, gnl|canFam2|chr6 (12501649-12501526) | |
| 506-685, gnl|danRer3|chr19 (59523191-59523068) | |
| 506-685, gnl|dasNov1|scaffold_41458 (11209-11092) | |
| 506-685, gnl|echTel1|scaffold_294936 (41798-41921) | |
| 506-685, gnl|fr1|chrUn (263131037-263130917) | |
| 506-685, gnl|hg17|chr7 (99341285-99341408) | |
| 506-685, gnl|Hg17|chr7 (99341476-99341297) | |
| 506-685, gnl|loxAfr1|scaffold_113792 (537-414) | |
| 506-685, gnl|mm7|chr5 (137114608-137114731) | |
| 506-685, gnl|Mm7|chr5 (137114799-137114620) | |
| 506-685, gnl|monDom2|scaffold_66 (1976343-1976479) | |
| 506-685, gnl|oryCun1|scaffold_189975 (5764-5645) | |
| 506-685, gnl|panTro1|chr6 (101124413-101124536) | |
| 506-685, gnl|rheMac2|chr3 (47377870-47377993) | |
| 506-685, gnl|rn3|chr12 (17601399-17601522) | |
| 506-685, gnl|tetNig1|chr1 (5479987-5480100) | |
| 506-685, gnl|xenTro1|scaffold_814 (526894-527019) | |
| 821-974, gnl|bosTau2|chr25 (33180742-33180589) | |
| 821-974, gnl|canFam2|chr6 (12502541-12502383) | |
| 821-974, gnl|danRer3|chr19 (59524100-59523945) | |
| 821-974, gnl|echTel1|scaffold_294936 (40897-41055) | |
| 821-974, gnl|fr1|chrUn (263131483-263131325) | |
| 821-974, gnl|hg17|chr7 (99340408-99340566) | |
| 821-974, gnl|Hg17|chr7 (99340567-99340414) | |
| 821-974, gnl|loxAfr1|scaffold_113792 (1438-1280) | |
| 821-974, gnl|mm7|chr5 (137113849-137114005) | |
| 821-974, gnl|Mm7|chr5 (137114023-137113853) | |
| 821-974, gnl|monDom2|scaffold_66 (1975412-1975568) | |
| 821-974, gnl|oryCun1|scaffold_189975 (6574-6416) | |
| 821-974, gnl|panTro1|chr6 (101123536-101123694) | |
| 821-974, gnl|rheMac2|chr3 (47376994-47377152) | |
| 821-974, gnl|rn3|chr12 (17600536-17600692) | |
| 821-974, gnl|tetNig1|chr1 (5479513-5479671) | |
| 821-974, gnl|xenTro1|scaffold_814 (526017-526175) | |
| 1211-1523, gnl|bosTau2|chr14 (9832315-9832002) | |
| 1211-1523, gnl|Hg17|chr8 (49045684-49045997) | |
| 1211-1523, gnl|Mm7|chr16 (15169246-15168936) | |
| 1781-1957, gnl|bosTau2|chr25 (33178254-33178078) | |
| 1781-1957, gnl|canFam2|chr6 (12505228-12505035) | |
| 1781-1957, gnl|danRer3|chr19 (59526368-59526186) | |
| 1781-1957, gnl|dasNov1|scaffold_41458 (14722-14518) | |
| 1781-1957, gnl|echTel1|scaffold_294936 (37793-37993) | |
| 1781-1957, gnl|fr1|chrUn (263133152-263132950) | |
| 1781-1957, gnl|hg17|chr7 (99336433-99336628) | |
| 1781-1957, gnl|Hg17|chr7 (99336617-99336441) | |
| 1781-1957, gnl|loxAfr1|scaffold_113792 (4852-4653) | |
| 1781-1957, gnl|mm7|chr5 (137111411-137111614) | |
| 1781-1957, gnl|Mm7|chr5 (137111601-137111425) | |
| 1781-1957, gnl|monDom2|scaffold_66 (1972572-1972786) | |
| 1781-1957, gnl|oryCun1|scaffold_193147 (5972-6177) | |
| 1781-1957, gnl|panTro1|chr6 (101118956-101119151) | |
| 1781-1957, gnl|rheMac2|chr3 (47373313-47373508) | |
| 1781-1957, gnl|rn3|chr12 (17598057-17598260) | |
| 1781-1957, gnl|tetNig1|chr1 (5477926-5478109) | |
| 1781-1957, gnl|xenTro1|scaffold_2315 (6170-5978) | |
| 2055-2427, gnl|bosTau2|chr25 (33177105-33176722) | |
| 2055-2427, gnl|Hg17|chr7 (99335414-99335023) | |
| 2055-2427, gnl|Mm7|chr5 (137110447-137110106) | |
| 2059-2402, gnl|bosTau2|chr10 (95407-95059) | |
| 2059-2402, gnl|Hg17|chr7 (99335410-99335067) | |
| 2059-2402, gnl|Mm7|chr5 (137110444-137110131) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| fty (0.879198) | |
| nbm (0.595948) | |
| nep (0.36785) | |
| csp (0.322373) | |
| cag (0.302389) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| med (0.232504) | |
| ecc (0.23007) | |
| fli (0.202881) | |
| eye (0.170503) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.879198) | |
| nbm (0.595948) | |
| nep (0.36785) | |
| csp (0.322373) | |
| cag (0.302389) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| med (0.232504) | |
| ecc (0.23007) | |
| fli (0.202881) | |
| eye (0.170503) | |
| nco (0.161734) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jej (0.0989218) |