Ss1.1-Pig4-TMW8032B17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGCGGCGGCGGCGGCGGTACTGGTGGAGGAGTCGGCCCTTGGGCGGATGTTGACA TTGTGTTGTTGTTGTTGCTGACGGTAATGGCGGCGGCGGCGGCGATGGCCGGGACCCCAT CTCCTCTGTAGCCGAAGCCAAGACAATCCAGAGCGAACTCCGCGGCCTCGGAGCCCGCGG CAGCGACTCCGCTCAGCCTCGGCTGCCTCGCCAGCCCGTATCCCGGCCGCAGCCCCTGGA GTCAGGCCCCTTCGGGCGGGGGGCCGCGGAGGCTCAGGATGGCGGATTTCGACGAGATCT ACGAGGAGGAAGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGG ACCCGGTGGTGGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTG AATCAGAATTCCCTTCTTCTTTAACTGGAAAAGTAGCTCCTGAAGAATTTAAAGCCAGCA TCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTT GTGGCTGCCTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCA GTAAAAGAACACGAAGATCGATTGAGAAGTTATTAGAATGGGAAAACAATAGGTTATACC ACAAGCTGTGCTTGCACTGGAGACTGAGCAAAAGGAAATGTGAAACGAATAACATGATGG AATATGTCATCCTCATAGAATTTTTACCAAAGACACCGATTTTTCGACCAGATTAGCATT TGCTTTATTTATAGAGACTTTCCAAGTATGTTGTCTTTCCAATGGTGCCTTGCTTGGTGC TCTCCTGGTGGTGACATAGCATTGGTTCTACAGAATCGTGTGGTGTTTTTTTGTTTTGTT TGTTTGTTTTGTTTTTTAATAACCGCATGTTCTAAGTGTGCATTTTTGTCAAACTTTGCA ACAGTTATTTCATACAGATGTTTAATACTTAAGTTATTGTGCTCTTTTCTGTTATGTATT CTGATTTTCAAGGATTACTTTTTTGTATTATCAAAAAAAAAATACATTTGAACTTAGCAT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGCGGCGGCGGCGGCGGTACTGGTGGAGGAGTCGGCCCTTGGGCGGATGTTGACA TTGTGTTGTTGTTGTTGCTGACGGTAATGGCGGCGGCGGCGGCGATGGCCGGGACCCCAT CTCCTCTGTAGCCGAAGCCAAGACAATCCAGAGCGAACTCCGCGGCCTCGGAGCCCGCGG CAGCGACTCCGCTCAGCCTCGGCTGCCTCGCCAGCCCGTATCCCGGCCGCAGCCCCTGGA GTCAGGCCCCTTCGGGCGGGGGGCCGCGGAGGCTCAGGATGGCGGATTTCGACGAGATCT ACGAGGAGGAAGAGGACGAGGAGCGGGCCCTGGAGGAGCAGCTGCTCAAGTACTCGCCGG ACCCGGTGGTGGTCCGCGGCTCCGGTCACGTCACCGTATTTGGACTGAGCAACAAATTTG AATCAGAATTCCCTTCTTCTTTAACTGGAAAAGTAGCTCCTGAAGAATTTAAAGCCAGCA TCAACAGAGTTAACAGTTGTCTTAAGAAGAACCTTCCTGTTAATGTACGTTGGCTACTTT GTGGCTGCCTTTGTTGCTGCTGCACATTAGGTTGCAGTATGTGGCCAGTTATTTGCCTCA GTAAAAGAACACGAAGATCGATTGAGAAGTTATTAGAATGGGAAAACAATAGGTTATACC ACAAGCTGTGCTTGCACTGGAGACTGAGCAAAAGGAAATGTGAAACGAATAACATGATGG AATATGTCATCCTCATAGAATTTTTACCAAAGACACCGATTTTTCGACCAGATTAGCATT TGCTTTATTTATAGAGACTTTCCAAGTATGTTGTCTTTCCAATGGTGCCTTGCTTGGTGC TCTCCTGGTGGTGACATAGCATTGGTTCTACAGAATCGTGTGGTGTTTTTTTGTTTTGTT TGTTTGTTTTGTTTTTTAATAACCGCATGTTCTAAGTGTGCATTTTTGTCAAACTTTGCA ACAGTTATTTCATACAGATGTTTAATACTTAAGTTATTGTGCTCTTTTCTGTTATGTATT CTGATTTTCAAGGATTACTTTTTTGTATTATCAAAAAAAAAATACATTTGAACTTAGCAT AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-397, gnl|bosTau2|chr6 (34747195-34747589) | |
| 1-397, gnl|Hg17|chr4 (54771687-54771277) | |
| 1-397, gnl|Mm7|chr5 (74462817-74462430) | |
| 453-608, gnl|bosTau2|chr24 (6478851-6478696) | |
| 453-608, gnl|canFam2|chrX (60282248-60282423) | |
| 453-608, gnl|danRer3|chr14 (57003810-57003980) | |
| 453-608, gnl|dasNov1|scaffold_53013 (7233-7058) | |
| 453-608, gnl|echTel1|scaffold_217853 (7606-7781) | |
| 453-608, gnl|fr1|chrUn (149485939-149486114) | |
| 453-608, gnl|galGal2|chr4 (11886877-11887061) | |
| 453-608, gnl|hg17|chrX (72587266-72587441) | |
| 453-608, gnl|Hg17|chrX (72587274-72587429) | |
| 453-608, gnl|loxAfr1|scaffold_33251 (4196-4371) | |
| 453-608, gnl|mm7|chrX (98700950-98701127) | |
| 453-608, gnl|Mm7|chrX (98700958-98701113) | |
| 453-608, gnl|monDom2|scaffold_207 (96211-96040) | |
| 453-608, gnl|oryCun1|scaffold_183974 (6897-6722) | |
| 453-608, gnl|rheMac2|chrX (72686620-72686795) | |
| 453-608, gnl|rn3|chrX (91414405-91414582) | |
| 453-608, gnl|tetNig1|chrUn_random (162772585-162772410) | |
| 453-608, gnl|xenTro1|scaffold_69 (2316093-2315923) | |
| 887-1089, gnl|bosTau2|chr20 (8346290-8346494) | |
| 887-1089, gnl|Hg17|chr4 (54717077-54716883) | |
| 887-1089, gnl|Mm7|chr5 (74424855-74424669) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-397, gnl|bosTau2|chr6 (34747195-34747589) | |
| 1-397, gnl|Hg17|chr4 (54771687-54771277) | |
| 1-397, gnl|Mm7|chr5 (74462817-74462430) | |
| 453-608, gnl|bosTau2|chr24 (6478851-6478696) | |
| 453-608, gnl|canFam2|chrX (60282248-60282423) | |
| 453-608, gnl|danRer3|chr14 (57003810-57003980) | |
| 453-608, gnl|dasNov1|scaffold_53013 (7233-7058) | |
| 453-608, gnl|echTel1|scaffold_217853 (7606-7781) | |
| 453-608, gnl|fr1|chrUn (149485939-149486114) | |
| 453-608, gnl|galGal2|chr4 (11886877-11887061) | |
| 453-608, gnl|hg17|chrX (72587266-72587441) | |
| 453-608, gnl|Hg17|chrX (72587274-72587429) | |
| 453-608, gnl|loxAfr1|scaffold_33251 (4196-4371) | |
| 453-608, gnl|mm7|chrX (98700950-98701127) | |
| 453-608, gnl|Mm7|chrX (98700958-98701113) | |
| 453-608, gnl|monDom2|scaffold_207 (96211-96040) | |
| 453-608, gnl|oryCun1|scaffold_183974 (6897-6722) | |
| 453-608, gnl|rheMac2|chrX (72686620-72686795) | |
| 453-608, gnl|rn3|chrX (91414405-91414582) | |
| 453-608, gnl|tetNig1|chrUn_random (162772585-162772410) | |
| 453-608, gnl|xenTro1|scaffold_69 (2316093-2315923) | |
| 887-1089, gnl|bosTau2|chr20 (8346290-8346494) | |
| 887-1089, gnl|Hg17|chr4 (54717077-54716883) | |
| 887-1089, gnl|Mm7|chr5 (74424855-74424669) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| lyg (0.931718) | |
| thg (0.507164) | |
| mga (0.480615) | |
| rec (0.346141) | |
| cje (0.330469) | |
| sme (0.305437) | |
| ste (0.270416) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| duo (0.172801) | |
| csp (0.161186) | |
| isp (0.150376) | |
| ski (0.146735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.931718) | |
| thg (0.507164) | |
| mga (0.480615) | |
| rec (0.346141) | |
| cje (0.330469) | |
| sme (0.305437) | |
| ste (0.270416) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| sag (0.182715) | |
| gul (0.177588) | |
| duo (0.172801) | |
| csp (0.161186) | |
| isp (0.150376) | |
| ski (0.146735) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| jej (0.0989218) |