Non-Coding RNA Search

Ss1.1-Pig4-TMW8032C01.5

Sequence:


               
               CCATGGCGCTCCCGCTTGCAGCTCTGCGCGTCCTTCTGGGCGGCTTCTTCGCGCTCACGG
GGACAGCAAAGCTCTCGGGGCAGATCTCCGCTCCGGTGTCGGAGCAGATGAAAGCTCTGT
TCGTGCAGTTCGCTGAGGTGTTTCCACTGAAGGTGTTCGGCTACCAGCCAGATCCCATGA
GCTACCAAGTAGCTGTGGGCTGGCTGGAACTGCTGGCTGGGTTGCTGCTGGTCCTGGGCC
CACCGATGCTGCAAGAGATCAGTAACTTGCTTTTGACTCTGCTCATGATGGGGGCCATCT
TCACTTTGGCATCTCTGAAAGAGTCACTGAACACCTGCATCCCAGCCATCATCTGCCTGG
GGCTCCTGCTGCTGCTGGATATCTGCTAGCTCTTAGTCTAAACTAAAAAGATGTTCAGAC
CTACTAGGAAGAATTCTCCCAGTGAATTCAAGGACTCCTGGGAGTAGAGTGTCTCTTGCC
TCTTCATGCCATGTCACTGTCAAAGCAGGAACATGGTGGAAGACAAGAGTGCCACCTCAT
TGCCAATACTACCAAGGTCGGCCAGTGTTGAAGTAGACATCTGGTCTACCTGGCCCTGCT
TTCTCGCTTAGATGGTTACCGCTCTTTTTTGAGGGGTACGTGTTACACATTCCAGCATTC
CTCATGTCATTTGAAAATAGTAAGTGTAAATCACCCAAAATTTTAATGCCCCAAGTAACT
ACTTTCAATTCCTTTGTGTAACTGTACCTTCCAACTTTTTTCTGTGCCTTTATTTAGATA
TTGTTTAATGAAAATGAGATTTTATATTTGACTTTATTACCTGCTTTTTAAACCTAATAC
ATTGTAATACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGGCGCTCCCGCTTGCAGCTCTGCGCGTCCTTCTGGGCGGCTTCTTCGCGCTCACGG
GGACAGCAAAGCTCTCGGGGCAGATCTCCGCTCCGGTGTCGGAGCAGATGAAAGCTCTGT
TCGTGCAGTTCGCTGAGGTGTTTCCACTGAAGGTGTTCGGCTACCAGCCAGATCCCATGA
GCTACCAAGTAGCTGTGGGCTGGCTGGAACTGCTGGCTGGGTTGCTGCTGGTCCTGGGCC
CACCGATGCTGCAAGAGATCAGTAACTTGCTTTTGACTCTGCTCATGATGGGGGCCATCT
TCACTTTGGCATCTCTGAAAGAGTCACTGAACACCTGCATCCCAGCCATCATCTGCCTGG
GGCTCCTGCTGCTGCTGGATATCTGCTAGCTCTTAGTCTAAACTAAAAAGATGTTCAGAC
CTACTAGGAAGAATTCTCCCAGTGAATTCAAGGACTCCTGGGAGTAGAGTGTCTCTTGCC
TCTTCATGCCATGTCACTGTCAAAGCAGGAACATGGTGGAAGACAAGAGTGCCACCTCAT
TGCCAATACTACCAAGGTCGGCCAGTGTTGAAGTAGACATCTGGTCTACCTGGCCCTGCT
TTCTCGCTTAGATGGTTACCGCTCTTTTTTGAGGGGTACGTGTTACACATTCCAGCATTC
CTCATGTCATTTGAAAATAGTAAGTGTAAATCACCCAAAATTTTAATGCCCCAAGTAACT
ACTTTCAATTCCTTTGTGTAACTGTACCTTCCAACTTTTTTCTGTGCCTTTATTTAGATA
TTGTTTAATGAAAATGAGATTTTATATTTGACTTTATTACCTGCTTTTTAAACCTAATAC
ATTGTAATACCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8NCS4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8NCS4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               497-612, + strand, RNAz p=0.99817

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               497-612, + strand, RNAz p=0.99817

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-110, gnl|bosTau2|chr3 (77804453-77804562)
               

               
               1-110, gnl|dasNov1|scaffold_7280 (41631-41460)
               

               
               1-110, gnl|echTel1|scaffold_237964 (2561-2420)
               

               
               1-110, gnl|galGal2|chr23 (3926166-3925972)
               

               
               1-110, gnl|hg17|chr1 (35119881-35120030)
               

               
               1-110, gnl|Hg17|chr1 (35120001-35119892)
               

               
               1-110, gnl|loxAfr1|scaffold_62408 (5545-5373)
               

               
               1-110, gnl|mm7|chr4 (126570852-126570716)
               

               
               1-110, gnl|Mm7|chr4 (126570734-126570840)
               

               
               1-110, gnl|oryCun1|scaffold_126768 (10726-10559)
               

               
               1-110, gnl|panTro1|chr1 (35886906-35887055)
               

               
               1-110, gnl|rheMac2|chr1 (37783437-37783586)
               

               
               1-110, gnl|rn3|chr5 (146578858-146578722)
               


               
               284-612, gnl|bosTau2|chr3 (77807139-77807467)
               

               
               284-612, gnl|Hg17|chr1 (35116821-35116497)
               

               
               284-612, gnl|Mm7|chr4 (126573493-126573769)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-110, gnl|bosTau2|chr3 (77804453-77804562)
               

               
               1-110, gnl|dasNov1|scaffold_7280 (41631-41460)
               

               
               1-110, gnl|echTel1|scaffold_237964 (2561-2420)
               

               
               1-110, gnl|galGal2|chr23 (3926166-3925972)
               

               
               1-110, gnl|hg17|chr1 (35119881-35120030)
               

               
               1-110, gnl|Hg17|chr1 (35120001-35119892)
               

               
               1-110, gnl|loxAfr1|scaffold_62408 (5545-5373)
               

               
               1-110, gnl|mm7|chr4 (126570852-126570716)
               

               
               1-110, gnl|Mm7|chr4 (126570734-126570840)
               

               
               1-110, gnl|oryCun1|scaffold_126768 (10726-10559)
               

               
               1-110, gnl|panTro1|chr1 (35886906-35887055)
               

               
               1-110, gnl|rheMac2|chr1 (37783437-37783586)
               

               
               1-110, gnl|rn3|chr5 (146578858-146578722)
               


               
               284-612, gnl|bosTau2|chr3 (77807139-77807467)
               

               
               284-612, gnl|Hg17|chr1 (35116821-35116497)
               

               
               284-612, gnl|Mm7|chr4 (126573493-126573769)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	1-110, gnl\|bosTau2\|chr3 (77804453-77804562)
	1-110, gnl\|dasNov1\|scaffold_7280 (41631-41460)
	1-110, gnl\|echTel1\|scaffold_237964 (2561-2420)
	1-110, gnl\|galGal2\|chr23 (3926166-3925972)
	1-110, gnl\|hg17\|chr1 (35119881-35120030)
	1-110, gnl\|Hg17\|chr1 (35120001-35119892)
	1-110, gnl\|loxAfr1\|scaffold_62408 (5545-5373)
	1-110, gnl\|mm7\|chr4 (126570852-126570716)
	1-110, gnl\|Mm7\|chr4 (126570734-126570840)
	1-110, gnl\|oryCun1\|scaffold_126768 (10726-10559)
	1-110, gnl\|panTro1\|chr1 (35886906-35887055)
	1-110, gnl\|rheMac2\|chr1 (37783437-37783586)
	1-110, gnl\|rn3\|chr5 (146578858-146578722)

	284-612, gnl\|bosTau2\|chr3 (77807139-77807467)
	284-612, gnl\|Hg17\|chr1 (35116821-35116497)
	284-612, gnl\|Mm7\|chr4 (126573493-126573769)

	mgp (0.230681)
	sag (0.182715)
	rec (0.17307)
	pty (0.142714)
	lyg (0.133103)
	cov (0.132153)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	pgl (0.118483)