Ss1.1-Pig4-TMW8032C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGACTCATTCTTCAATATGGGACCGCTGGATTTCGAACGAAAGCAGACCGTCTTGAT CATGTCATGTTTCGAATGGGATTATTAGCTGTCCTGAGGTCAAAGCAGACAAAGTCTACC ATAGGAGTCATGGTAACAGCATCACACAATCCTGAGGACGACAATGGTGTAAAATTGGTT GACCCTTTGGGCGAAATGTTGGCGCCCTCCTGGGAGGAACATGCTACCCATTTGGCAAAT GCTGAGGAGCAAGATTTGGCACGAGCCTTGGTGGCCATCAGCGAGGAAGCAGCTGTGAAT CTGCACCAGGACGCCTTCGTGGTGATCGGTAGAGATACCAGGCCCAGCAGTGAGAAACTT TCAGAGTCTGTGATAGATGGCGTGACTGTCTTAGGAGGTCAATTCCATGACTATGGCTTG TTGACGACACCGCAGCTTCACTACATGGTGTGCTGTCGAAACACCGGTGGCCAGTATGGA GAGGCGACCATAGATGGCTACTACCACAAGCTCTCCACAGCCTTTGTGGAACTTAGCAAA CAGGCCTCCTGCAGTGGAGATGACCACAGAACACTGAAGGTTGACTGTGCAAACGGCATA GGGGCCCTGAAGCTAAAAGAAATGAAACACTACTTGCCCCAGGGGCTGTCAGTTCAGCTA TTTAATGATGGGACCAAAGGGAAACTTAATCATTTCTGTGGGGCCGACTTTGTGAAAAGT CATCAGAAACCTCCAGAGGGAATTGAGATGAAGGCCAATGAAAGATGCTGTTCCTTTGAT GGAGATGCAGACAGAATAATTTACTACTACTGTGATGTCGATGGCCACTTTCATCTTATA GATGGAGACAAGATTGCCACACTAATTAGCAGCTTCCTTAAAGAGCTCCTGTTGGAGATT GGAGAAAGTTTGACTGTTGGTGTTGTGCAAACTGCATATGCAAATGGAAGTTCAACACGG TATCTGGAAGAAGTTATGAAGGTACCTGTCTATTGTACTAAAACTGGTGTGAAACATTTG CACCACAAGGCTCAAGAATTTGACCTTGGAGTTTATTTTGAGGCAAATGGGCATGGCACA GTACTGTTTAGTAAAGCTGCTGAAGCAAAGATAAGACAACTAGCAAAAGAACTGGAAGAT AAGAAAGGGAAAGCTGCTAAGATGCTTGAAAATGTTATAGACCTGTTTAATCAGGCAACT GGTGATGCAATTTCTGACATGCTGGTGATTGAGGCAATCTTGGCTCTGAAGGGCTTGACT ATACAGCAGTGGGATGCTCTCTATACGGATCTTCCAAACAGACAGCTGAAGGTTAAGGTT GCAGACAGGCAAGTAATTAGCACCACAGATGCTGAAAGACAAGTAGTTAAACCTCCCGGA CTCCAGGAAGCGATCAATGACCTGGTAAAGAAGTACAAGCTTTCCCGAGCTTTTGTACGG CCCTCGGGTACGGAAGACGTGGTCCGAGTTTACGCAGAAGCCGACTCGCAGGAAAATGCT GACAGCCTTGCATATGAAGTGAGCTTGGCAGTATTTCAGCAGGCCGGAGGAGTCGGAGAA AGACCTCAGCCAGGTTTCTAAGGACATTGTTTTATATTCTTGAGAAACTGGATTTTTTAA TTTTTTAAAAGTTTTCATAGAATAGTACTGCCATTGTTATGATAGGTTCAAAGACATTTA TAATCATAATATTTATGGTGCACTTTACTAGACTGTTTCTAGATATGATTATTTATCTTA AACACTACTAAAATAATTCTTTAGAAACAGGTAAAAATACTATACTTGTTAAATTCAGTT TTTTAAAATGAAATTTACCTCTGCTATCAGTCTCACTAATGTAAAATTCTGAAGCTCAAC TATATGATTTAATCATTGACTTTATAATATATGCAAGGAAAAATTCATAAAGCTGCTAGA AAATTAAATTTTATTTAATGCCAACTCCTTGTGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGACTCATTCTTCAATATGGGACCGCTGGATTTCGAACGAAAGCAGACCGTCTTGAT CATGTCATGTTTCGAATGGGATTATTAGCTGTCCTGAGGTCAAAGCAGACAAAGTCTACC ATAGGAGTCATGGTAACAGCATCACACAATCCTGAGGACGACAATGGTGTAAAATTGGTT GACCCTTTGGGCGAAATGTTGGCGCCCTCCTGGGAGGAACATGCTACCCATTTGGCAAAT GCTGAGGAGCAAGATTTGGCACGAGCCTTGGTGGCCATCAGCGAGGAAGCAGCTGTGAAT CTGCACCAGGACGCCTTCGTGGTGATCGGTAGAGATACCAGGCCCAGCAGTGAGAAACTT TCAGAGTCTGTGATAGATGGCGTGACTGTCTTAGGAGGTCAATTCCATGACTATGGCTTG TTGACGACACCGCAGCTTCACTACATGGTGTGCTGTCGAAACACCGGTGGCCAGTATGGA GAGGCGACCATAGATGGCTACTACCACAAGCTCTCCACAGCCTTTGTGGAACTTAGCAAA CAGGCCTCCTGCAGTGGAGATGACCACAGAACACTGAAGGTTGACTGTGCAAACGGCATA GGGGCCCTGAAGCTAAAAGAAATGAAACACTACTTGCCCCAGGGGCTGTCAGTTCAGCTA TTTAATGATGGGACCAAAGGGAAACTTAATCATTTCTGTGGGGCCGACTTTGTGAAAAGT CATCAGAAACCTCCAGAGGGAATTGAGATGAAGGCCAATGAAAGATGCTGTTCCTTTGAT GGAGATGCAGACAGAATAATTTACTACTACTGTGATGTCGATGGCCACTTTCATCTTATA GATGGAGACAAGATTGCCACACTAATTAGCAGCTTCCTTAAAGAGCTCCTGTTGGAGATT GGAGAAAGTTTGACTGTTGGTGTTGTGCAAACTGCATATGCAAATGGAAGTTCAACACGG TATCTGGAAGAAGTTATGAAGGTACCTGTCTATTGTACTAAAACTGGTGTGAAACATTTG CACCACAAGGCTCAAGAATTTGACCTTGGAGTTTATTTTGAGGCAAATGGGCATGGCACA GTACTGTTTAGTAAAGCTGCTGAAGCAAAGATAAGACAACTAGCAAAAGAACTGGAAGAT AAGAAAGGGAAAGCTGCTAAGATGCTTGAAAATGTTATAGACCTGTTTAATCAGGCAACT GGTGATGCAATTTCTGACATGCTGGTGATTGAGGCAATCTTGGCTCTGAAGGGCTTGACT ATACAGCAGTGGGATGCTCTCTATACGGATCTTCCAAACAGACAGCTGAAGGTTAAGGTT GCAGACAGGCAAGTAATTAGCACCACAGATGCTGAAAGACAAGTAGTTAAACCTCCCGGA CTCCAGGAAGCGATCAATGACCTGGTAAAGAAGTACAAGCTTTCCCGAGCTTTTGTACGG CCCTCGGGTACGGAAGACGTGGTCCGAGTTTACGCAGAAGCCGACTCGCAGGAAAATGCT GACAGCCTTGCATATGAAGTGAGCTTGGCAGTATTTCAGCAGGCCGGAGGAGTCGGAGAA AGACCTCAGCCAGGTTTCTAAGGACATTGTTTTATATTCTTGAGAAACTGGATTTTTTAA TTTTTTAAAAGTTTTCATAGAATAGTACTGCCATTGTTATGATAGGTTCAAAGACATTTA TAATCATAATATTTATGGTGCACTTTACTAGACTGTTTCTAGATATGATTATTTATCTTA AACACTACTAAAATAATTCTTTAGAAACAGGTAAAAATACTATACTTGTTAAATTCAGTT TTTTAAAATGAAATTTACCTCTGCTATCAGTCTCACTAATGTAAAATTCTGAAGCTCAAC TATATGATTTAATCATTGACTTTATAATATATGCAAGGAAAAATTCATAAAGCTGCTAGA AAATTAAATTTTATTTAATGCCAACTCCTTGTGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 980-1083, + strand, RNAz p=0.731415 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 980-1083, + strand, RNAz p=0.731415 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-157, gnl|bosTau2|chr9 (10098778-10098622) | |
| 1-157, gnl|Hg17|chr6 (83957402-83957246) | |
| 1-157, gnl|Mm7|chr9 (86673712-86673556) | |
| 541-743, gnl|bosTau2|chr9 (10089251-10089049) | |
| 541-743, gnl|Hg17|chr6 (83948372-83948170) | |
| 541-743, gnl|Mm7|chr9 (86668230-86668028) | |
| 980-1083, gnl|bosTau2|chr9 (10079888-10079785) | |
| 980-1083, gnl|canFam2|chr12 (46593459-46593567) | |
| 980-1083, gnl|danRer3|chrNA (223432159-223432050) | |
| 980-1083, gnl|dasNov1|scaffold_10642 (42629-42734) | |
| 980-1083, gnl|echTel1|scaffold_284160 (53081-52984) | |
| 980-1083, gnl|fr1|chrUn (110864280-110864172) | |
| 980-1083, gnl|galGal2|chr3 (76268411-76268303) | |
| 980-1083, gnl|hg17|chr6 (83942395-83942503) | |
| 980-1083, gnl|Hg17|chr6 (83942500-83942397) | |
| 980-1083, gnl|loxAfr1|scaffold_2725 (90096-89988) | |
| 980-1083, gnl|mm7|chr9 (86662765-86662873) | |
| 980-1083, gnl|Mm7|chr9 (86662870-86662767) | |
| 980-1083, gnl|monDom2|scaffold_0 (146981487-146981379) | |
| 980-1083, gnl|oryCun1|scaffold_198405 (109720-109612) | |
| 980-1083, gnl|panTro1|chr5 (85578144-85578252) | |
| 980-1083, gnl|rheMac2|chr4 (79204995-79205103) | |
| 980-1083, gnl|rn3|chr8 (91833817-91833925) | |
| 980-1083, gnl|tetNig1|chr14 (6291029-6291137) | |
| 980-1083, gnl|xenTro1|scaffold_73 (2391590-2391482) | |
| 1192-1328, gnl|bosTau2|chr9 (10077170-10077034) | |
| 1192-1328, gnl|Hg17|chr6 (83938500-83938364) | |
| 1192-1328, gnl|Mm7|chr9 (86660983-86660844) | |
| 1484-1956, gnl|bosTau2|chr9 (10075000-10074527) | |
| 1484-1956, gnl|Hg17|chr6 (83935769-83935335) | |
| 1484-1956, gnl|Mm7|chr9 (86658766-86658355) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-157, gnl|bosTau2|chr9 (10098778-10098622) | |
| 1-157, gnl|Hg17|chr6 (83957402-83957246) | |
| 1-157, gnl|Mm7|chr9 (86673712-86673556) | |
| 541-743, gnl|bosTau2|chr9 (10089251-10089049) | |
| 541-743, gnl|Hg17|chr6 (83948372-83948170) | |
| 541-743, gnl|Mm7|chr9 (86668230-86668028) | |
| 980-1083, gnl|bosTau2|chr9 (10079888-10079785) | |
| 980-1083, gnl|canFam2|chr12 (46593459-46593567) | |
| 980-1083, gnl|danRer3|chrNA (223432159-223432050) | |
| 980-1083, gnl|dasNov1|scaffold_10642 (42629-42734) | |
| 980-1083, gnl|echTel1|scaffold_284160 (53081-52984) | |
| 980-1083, gnl|fr1|chrUn (110864280-110864172) | |
| 980-1083, gnl|galGal2|chr3 (76268411-76268303) | |
| 980-1083, gnl|hg17|chr6 (83942395-83942503) | |
| 980-1083, gnl|Hg17|chr6 (83942500-83942397) | |
| 980-1083, gnl|loxAfr1|scaffold_2725 (90096-89988) | |
| 980-1083, gnl|mm7|chr9 (86662765-86662873) | |
| 980-1083, gnl|Mm7|chr9 (86662870-86662767) | |
| 980-1083, gnl|monDom2|scaffold_0 (146981487-146981379) | |
| 980-1083, gnl|oryCun1|scaffold_198405 (109720-109612) | |
| 980-1083, gnl|panTro1|chr5 (85578144-85578252) | |
| 980-1083, gnl|rheMac2|chr4 (79204995-79205103) | |
| 980-1083, gnl|rn3|chr8 (91833817-91833925) | |
| 980-1083, gnl|tetNig1|chr14 (6291029-6291137) | |
| 980-1083, gnl|xenTro1|scaffold_73 (2391590-2391482) | |
| 1192-1328, gnl|bosTau2|chr9 (10077170-10077034) | |
| 1192-1328, gnl|Hg17|chr6 (83938500-83938364) | |
| 1192-1328, gnl|Mm7|chr9 (86660983-86660844) | |
| 1484-1956, gnl|bosTau2|chr9 (10075000-10074527) | |
| 1484-1956, gnl|Hg17|chr6 (83935769-83935335) | |
| 1484-1956, gnl|Mm7|chr9 (86658766-86658355) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cmu (0.55918) | |
| tbr (0.308356) | |
| csk (0.281492) | |
| ova (0.258264) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| col (0.195008) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nje (0.16592) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (0.55918) | |
| tbr (0.308356) | |
| csk (0.281492) | |
| ova (0.258264) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| col (0.195008) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cut (0.169924) | |
| nje (0.16592) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ret (0.128733) | |
| bla (0.124347) | |
| eep (0.122564) | |
| eru (0.120048) |