Ss1.1-Pig4-TMW8032C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCGGTGGCCGACCCGTCAGCAGCCGGCGGCGGTCTCGAGGGGCGGCGCCGCCCTCCT CCCTGCGAGCCGGTCCCGCGGCCGGGCGGGTGGCCGGCCCGAGGCCTCGGCGCCATGAAG CTCTACAGCCTCAGCGTCCTCTACAAAGGCGATCCCAAGGTGGTGCTGCTCAAAGCCGCG TACGACGTGTCCTCCTTCAGCTTCTTCCAGAGGTCCAGTGTTCAGGAATTCATGACCTTC ACAAGTCAGCTGATTGTGGAGCGCTCAGCAAAAGGCAGCAGAGCTTCTGTCAAGGAACAA GAATATCTGTGCCACGTCTACGTGAGAAACGACAGTCTTGCGGGAGTGGTCATTGCTGAC AGTGAATACCCATCCCGGGTGGCTTTTACCTTGCTGGAGAAGGTACTAGACGAATTCTCC AAGCAGGTCGACAGGATAGAATGGCCAGTGGGATCCCCTGCCACCATCCTCTACACAGGC CTGGATGGTCACCTCAGTAGATACCAGAACCCCCGAGAAGCTGACCCCATGAGTAAAGTG CAGGCTGAACTAGACGAGACCAAAATCATCCTGCACAACACCATGGAGTCTTTGTTGGAG CGGGGCGAGAAGCTGGATGACCTGGTGTCCAAGTCCGAAGTGCTGGGGGTGCAGTCTAAA GCCTTCTATAAAACGGCCCGGAAACAAAACTCGTGCTGCGCAATCATGTGACGGCAGCTG GCAGTGCCCCTGCGCCCACCGTCACCGTCATCCGCATCGGAACGCAGCCCCCAGGACGCG GAGCCGCGGGGAACCACCCAGCGTGGGACGGACTCAGTTTTCGCTCTAGGGCTCCTGGGA GGAACGAGGGTGGTGGAAGGGACCGGGGGCGGGTCGTTCACATCCACGTGTCTAGTAATT TTTGAGACGGTCGTTCGAGGCCCCTCAAGCTGTATTTTTTGGCCCAAATGAAACCATAAA GCTCAGTGACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCGGTGGCCGACCCGTCAGCAGCCGGCGGCGGTCTCGAGGGGCGGCGCCGCCCTCCT CCCTGCGAGCCGGTCCCGCGGCCGGGCGGGTGGCCGGCCCGAGGCCTCGGCGCCATGAAG CTCTACAGCCTCAGCGTCCTCTACAAAGGCGATCCCAAGGTGGTGCTGCTCAAAGCCGCG TACGACGTGTCCTCCTTCAGCTTCTTCCAGAGGTCCAGTGTTCAGGAATTCATGACCTTC ACAAGTCAGCTGATTGTGGAGCGCTCAGCAAAAGGCAGCAGAGCTTCTGTCAAGGAACAA GAATATCTGTGCCACGTCTACGTGAGAAACGACAGTCTTGCGGGAGTGGTCATTGCTGAC AGTGAATACCCATCCCGGGTGGCTTTTACCTTGCTGGAGAAGGTACTAGACGAATTCTCC AAGCAGGTCGACAGGATAGAATGGCCAGTGGGATCCCCTGCCACCATCCTCTACACAGGC CTGGATGGTCACCTCAGTAGATACCAGAACCCCCGAGAAGCTGACCCCATGAGTAAAGTG CAGGCTGAACTAGACGAGACCAAAATCATCCTGCACAACACCATGGAGTCTTTGTTGGAG CGGGGCGAGAAGCTGGATGACCTGGTGTCCAAGTCCGAAGTGCTGGGGGTGCAGTCTAAA GCCTTCTATAAAACGGCCCGGAAACAAAACTCGTGCTGCGCAATCATGTGACGGCAGCTG GCAGTGCCCCTGCGCCCACCGTCACCGTCATCCGCATCGGAACGCAGCCCCCAGGACGCG GAGCCGCGGGGAACCACCCAGCGTGGGACGGACTCAGTTTTCGCTCTAGGGCTCCTGGGA GGAACGAGGGTGGTGGAAGGGACCGGGGGCGGGTCGTTCACATCCACGTGTCTAGTAATT TTTGAGACGGTCGTTCGAGGCCCCTCAAGCTGTATTTTTTGGCCCAAATGAAACCATAAA GCTCAGTGACTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-218, gnl|bosTau2|chr4 (39141523-39141740) | |
| 1-218, gnl|Hg17|chr7 (44013838-44014078) | |
| 1-218, gnl|Mm7|chr11 (5907796-5908007) | |
| 300-404, gnl|bosTau2|chr4 (39145375-39145479) | |
| 300-404, gnl|canFam2|chrUn (33583651-33583534) | |
| 300-404, gnl|danRer3|chrUn (27431187-27431302) | |
| 300-404, gnl|echTel1|scaffold_64386 (3487-3371) | |
| 300-404, gnl|fr1|chrUn (114451476-114451593) | |
| 300-404, gnl|hg17|chr7 (44019216-44019333) | |
| 300-404, gnl|Hg17|chr7 (44019222-44019326) | |
| 300-404, gnl|loxAfr1|scaffold_14435 (17547-17431) | |
| 300-404, gnl|mm7|chr11 (5913183-5913300) | |
| 300-404, gnl|Mm7|chr11 (5913189-5913293) | |
| 300-404, gnl|monDom2|scaffold_1 (155894933-155894816) | |
| 300-404, gnl|oryCun1|scaffold_174611 (9846-9946) | |
| 300-404, gnl|panTro1|chr6_random (30933539-30933422) | |
| 300-404, gnl|rheMac2|chr3 (82130137-82130020) | |
| 300-404, gnl|rn3|chr14 (86643903-86644020) | |
| 300-404, gnl|tetNig1|chr12 (3317974-3317860) | |
| 675-972, gnl|bosTau2|chr4 (39149016-39149317) | |
| 675-972, gnl|canFam2|chr16 (46927994-46928240) | |
| 675-972, gnl|dasNov1|scaffold_10321 (68067-67785) | |
| 675-972, gnl|hg17|chr6 (159312457-159312714) | |
| 675-972, gnl|Hg17|chr7 (44025085-44025385) | |
| 675-972, gnl|loxAfr1|scaffold_14435 (12779-13082) | |
| 675-972, gnl|Mm7|chr11 (5918011-5918294) | |
| 675-972, gnl|mm7|chrX (72680118-72679870) | |
| 675-972, gnl|oryCun1|scaffold_174611 (10496-10270) | |
| 675-972, gnl|panTro1|chr5 (163151657-163151914) | |
| 675-972, gnl|rheMac2|chr4 (104004226-104003969) | |
| 675-972, gnl|rn3|chrX (63056468-63056217) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-218, gnl|bosTau2|chr4 (39141523-39141740) | |
| 1-218, gnl|Hg17|chr7 (44013838-44014078) | |
| 1-218, gnl|Mm7|chr11 (5907796-5908007) | |
| 300-404, gnl|bosTau2|chr4 (39145375-39145479) | |
| 300-404, gnl|canFam2|chrUn (33583651-33583534) | |
| 300-404, gnl|danRer3|chrUn (27431187-27431302) | |
| 300-404, gnl|echTel1|scaffold_64386 (3487-3371) | |
| 300-404, gnl|fr1|chrUn (114451476-114451593) | |
| 300-404, gnl|hg17|chr7 (44019216-44019333) | |
| 300-404, gnl|Hg17|chr7 (44019222-44019326) | |
| 300-404, gnl|loxAfr1|scaffold_14435 (17547-17431) | |
| 300-404, gnl|mm7|chr11 (5913183-5913300) | |
| 300-404, gnl|Mm7|chr11 (5913189-5913293) | |
| 300-404, gnl|monDom2|scaffold_1 (155894933-155894816) | |
| 300-404, gnl|oryCun1|scaffold_174611 (9846-9946) | |
| 300-404, gnl|panTro1|chr6_random (30933539-30933422) | |
| 300-404, gnl|rheMac2|chr3 (82130137-82130020) | |
| 300-404, gnl|rn3|chr14 (86643903-86644020) | |
| 300-404, gnl|tetNig1|chr12 (3317974-3317860) | |
| 675-972, gnl|bosTau2|chr4 (39149016-39149317) | |
| 675-972, gnl|canFam2|chr16 (46927994-46928240) | |
| 675-972, gnl|dasNov1|scaffold_10321 (68067-67785) | |
| 675-972, gnl|hg17|chr6 (159312457-159312714) | |
| 675-972, gnl|Hg17|chr7 (44025085-44025385) | |
| 675-972, gnl|loxAfr1|scaffold_14435 (12779-13082) | |
| 675-972, gnl|Mm7|chr11 (5918011-5918294) | |
| 675-972, gnl|mm7|chrX (72680118-72679870) | |
| 675-972, gnl|oryCun1|scaffold_174611 (10496-10270) | |
| 675-972, gnl|panTro1|chr5 (163151657-163151914) | |
| 675-972, gnl|rheMac2|chr4 (104004226-104003969) | |
| 675-972, gnl|rn3|chrX (63056468-63056217) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| amn (0.417711) | |
| elu (0.385356) | |
| cga (0.279096) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| csp (0.161186) | |
| cli (0.152812) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| elu (0.385356) | |
| cga (0.279096) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| csp (0.161186) | |
| cli (0.152812) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |