Non-Coding RNA Search

Ss1.1-Pig4-TMW8032C10.5

Sequence:


               
               TAAGGAGGTTTTATGAAAATGAGACCTTTTTGGTTTGATCTTTTTCTCAAATAAGAAATA
AGTAGCAAGAGTTTGCATTAAGTTTATAATATTTGAATTTTTTTCTCCGTGAATGCAACT
AATTTTCATAAGCAAATACTGGGTTTTATAATATTAAAAAATGTGTCAGTATCATATGCA
CAGGGGGTGACTATGTAGGTGGCTGATAGGAACTGCTATGGACAGGTAGAGCAAGTAAGT
ACTGCGTGAAGGTTTTCTACTTCCAAAGATTAAGAATCATTCTGCCTGCAAACAAAATAT
ATTCTGAAGCCTATTTATTTTGTAATCCTTGTTCTGAAGTTTTGGGGGTCTGAAATTTAT
AAAAAAAGTATGAAATTATAAAATACTAAGCAGCTTGGCTTTATTTTAAAGTAGTACGTT
ACTTTAAAAGAAAAGCATTAATAAGTAATAAAACAAGATAGAATGAAATTAGTCATTATA
AATTCCACCTATATTTAAAGTATTCTAAAATACTGTATTTAACTTATGGTAGCTATTTTT
TTCTAGCTGGTTGAGTGAAATTTATTATTTTTTTTATTTTTTAAATGACCAGTATGGTTA
TGAACAAGATTTGTATAGTCAGCTTCTTTGTTTCATAACACTTCAGTAAAAGTTATTTTA
AAAGCTGTAACATAAAATTAAACTCTTAAAAAATGGCAGATGTCATGCTGGTATCTTATG
GAAGTTTCATAAGCGTTCTTTTGTCCTAACTCAGAAAAATATATGTCAGAGTTCTGGAAT
ATATCTTTAGTCAAAAATTTTATCCACATAAATATGTTTACAACCTATATAAAGCAAAAA
AGAATGTGTGTAACTATAGTGAGCAATATAATTTTGCTCATGTTATCTGATGTTGTTAAA
AGAAAAATAAAAGAATGAATTAAATCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGAGGTTTTATGAAAATGAGACCTTTTTGGTTTGATCTTTTTCTCAAATAAGAAATA
AGTAGCAAGAGTTTGCATTAAGTTTATAATATTTGAATTTTTTTCTCCGTGAATGCAACT
AATTTTCATAAGCAAATACTGGGTTTTATAATATTAAAAAATGTGTCAGTATCATATGCA
CAGGGGGTGACTATGTAGGTGGCTGATAGGAACTGCTATGGACAGGTAGAGCAAGTAAGT
ACTGCGTGAAGGTTTTCTACTTCCAAAGATTAAGAATCATTCTGCCTGCAAACAAAATAT
ATTCTGAAGCCTATTTATTTTGTAATCCTTGTTCTGAAGTTTTGGGGGTCTGAAATTTAT
AAAAAAAGTATGAAATTATAAAATACTAAGCAGCTTGGCTTTATTTTAAAGTAGTACGTT
ACTTTAAAAGAAAAGCATTAATAAGTAATAAAACAAGATAGAATGAAATTAGTCATTATA
AATTCCACCTATATTTAAAGTATTCTAAAATACTGTATTTAACTTATGGTAGCTATTTTT
TTCTAGCTGGTTGAGTGAAATTTATTATTTTTTTTATTTTTTAAATGACCAGTATGGTTA
TGAACAAGATTTGTATAGTCAGCTTCTTTGTTTCATAACACTTCAGTAAAAGTTATTTTA
AAAGCTGTAACATAAAATTAAACTCTTAAAAAATGGCAGATGTCATGCTGGTATCTTATG
GAAGTTTCATAAGCGTTCTTTTGTCCTAACTCAGAAAAATATATGTCAGAGTTCTGGAAT
ATATCTTTAGTCAAAAATTTTATCCACATAAATATGTTTACAACCTATATAAAGCAAAAA
AGAATGTGTGTAACTATAGTGAGCAATATAATTTTGCTCATGTTATCTGATGTTGTTAAA
AGAAAAATAAAAGAATGAATTAAATCAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               133-703, gnl|bosTau2|chr11 (66603421-66602838)
               

               
               133-703, gnl|Hg17|chr8 (92167629-92168232)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-703, gnl|bosTau2|chr11 (66603421-66602838)
               

               
               133-703, gnl|Hg17|chr8 (92167629-92168232)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fco (0.471624)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               liv (0.292569)
               

               
               lyg (0.266205)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)

	133-703, gnl\|bosTau2\|chr11 (66603421-66602838)
	133-703, gnl\|Hg17\|chr8 (92167629-92168232)

	fco (0.471624)
	tbr (0.308356)
	fat (0.294855)
	liv (0.292569)
	lyg (0.266205)
	fcc (0.197785)
	col (0.195008)
	isp (0.150376)
	lin (0.145603)
	spl (0.143184)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)