Ss1.1-Pig4-TMW8032C15.3
|
CGATCAAGATGTGGCACCTTAAACTCTTTGCAGTACTCGTCATCTGCCTGTTGCTGGCAG
TCCAGGTCCACGGCTCCCCGATACCGGAACTGAGTTCCGCCAAGAAAAGGCCGAGGAGAA
TGACTCCATTTTGGAGAGCGGTTTCCCTCAGGCCCATTGGAGCCTCTTGCAGAGATGATT
CGGAGTGCCTCACGAGGCTGTGCAGAAAAAGACGCTGTTCCCTAAGTGTGGCCCAGGAAT
GATGTAAATACCAGGGGGAGAGGACAGCACTTACCTGCGACAATGCTCCGTTCTATGGAA
TATTGGTTAACTGCATTTGACTGGAGACACTTAAGTGAAGCAACCTTGTGTTTTTAAAGA
CAGATGTATGCTTTAAATCGGTCTCCATTTCTTCTTAGAATGTTCATATGTAGATAAGCC
TAACAACTTGTCAACTTAAGAGTTTATTTTTCTATGTGTACTATTATTTAAACTGTGGCA
GCCTGGAATTCACACTTTTGAGGAAAAGGATTCATTTTGTGGAAGACAGGAAAACACCGC
ACTGCCTAATAACAATGTGCTAACTTCTTAATCTGGAACGTGCAGTGAGAGCATTTTTTT
CAAGAAATAACCAACAGCAGGCTCCAGGCAAAAGTTTAGTAATAGCTAATGATCAGCCTT
GCCAAGTTCATAAACTGGACGCTACTCCTTCACTCCATGTAAAGAACTCTCCAGGGAGGT
ACCAAAGATGGGGAATGCTTGCAACTCGCTACCTGATGATGTACCTCAGTCTGTTCATAA
ATAGAGGCAGAACTGGAAGAACAACCAGTGAAACGAAACAATAAAAGCCCAAGCCACCAA
GAGTCACAAAAAAGAAGGTGTCTGAGATTTCTGTTGGAGCGTGGCAAATTCTGAGCTATG
CACGAGGACCCCTGGCCAACCAGTTCAGAATTTCTGTAGTCAGAAATTAAGATCTGTACT
GGCAGGACCAGACTTTGCAAGAGTGAAATGGACTCTTAAATGGGAAAGAGGAATTATACA
AAGAGGGCAAAGAAAGAGCTGAAGAAGTGTAGAGAGCACAGTGTTTATAAACTTTAATAC
AGAAAATCTATTTGATATTTATTAAACTTGGTTTCTCCAGCTATGGTTTGGCATTATACA
AAGCATCTTAATGACACAGTAGAGTTAAAAAGATCTTTACAAATTGAAATGTGATACCCT
TGTCTCCAAATATTTTAATTGCCATAAATTTGTTTAAAAATACACATTAAACGCATGTTT
GACACTCTAAACGTTCTATAATCTCAATACCACAAAATACATATAATATACTATACAGAT
GTGGAAAAATCTAGTTAGTATATAATACTTTGCTCACCATTAACAGCTTTATTATGTGAA
ATGCACATACTGACTTAGAAATCCTAGCTTTTGAGCCCCAAAGTACCTCTGATATTTTTA
ATGTATTGCAACAAATAAAAAAATCACAGTATATAATTGAAATTTTGGTTGAAAATGTCA
GATGCCTAAATATTTTGGATAAGAGAAATGTAAAACAAAGATCTGGATCATGTACAAAAC
AAAGGCATCCTATCAGACACTAACAGTACCTTTCTGCAGAATCAACAAGGCTTTTTAATT
TATCAGCGGCATTACCTCCCCTCCAAAACCCTCCCCAACTATCAAACCAGTATTCACCAA
ATAATTTTAATTTCAAATAAGATAAAAGGATTTTCAATAAATATATAAGCATTTCTATCC
TCCATATACAAAATTTCTTAAAACCATTCAAAACGGAGGCTAGATAGAAATTTTCCTAAC
TGTGCTTACCAACCCCACACCTGGCCCTCAAAGGTGATGCCTCTGCAGGCACTACCAACT
GGGCCAGCTCTGTTGGTGAGCCCTATCCACTGTAATCTGTTCATTGGGTGCCTGTAAAGA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGATCAAGATGTGGCACCTTAAACTCTTTGCAGTACTCGTCATCTGCCTGTTGCTGGCAG
TCCAGGTCCACGGCTCCCCGATACCGGAACTGAGTTCCGCCAAGAAAAGGCCGAGGAGAA
TGACTCCATTTTGGAGAGCGGTTTCCCTCAGGCCCATTGGAGCCTCTTGCAGAGATGATT
CGGAGTGCCTCACGAGGCTGTGCAGAAAAAGACGCTGTTCCCTAAGTGTGGCCCAGGAAT
GATGTAAATACCAGGGGGAGAGGACAGCACTTACCTGCGACAATGCTCCGTTCTATGGAA
TATTGGTTAACTGCATTTGACTGGAGACACTTAAGTGAAGCAACCTTGTGTTTTTAAAGA
CAGATGTATGCTTTAAATCGGTCTCCATTTCTTCTTAGAATGTTCATATGTAGATAAGCC
TAACAACTTGTCAACTTAAGAGTTTATTTTTCTATGTGTACTATTATTTAAACTGTGGCA
GCCTGGAATTCACACTTTTGAGGAAAAGGATTCATTTTGTGGAAGACAGGAAAACACCGC
ACTGCCTAATAACAATGTGCTAACTTCTTAATCTGGAACGTGCAGTGAGAGCATTTTTTT
CAAGAAATAACCAACAGCAGGCTCCAGGCAAAAGTTTAGTAATAGCTAATGATCAGCCTT
GCCAAGTTCATAAACTGGACGCTACTCCTTCACTCCATGTAAAGAACTCTCCAGGGAGGT
ACCAAAGATGGGGAATGCTTGCAACTCGCTACCTGATGATGTACCTCAGTCTGTTCATAA
ATAGAGGCAGAACTGGAAGAACAACCAGTGAAACGAAACAATAAAAGCCCAAGCCACCAA
GAGTCACAAAAAAGAAGGTGTCTGAGATTTCTGTTGGAGCGTGGCAAATTCTGAGCTATG
CACGAGGACCCCTGGCCAACCAGTTCAGAATTTCTGTAGTCAGAAATTAAGATCTGTACT
GGCAGGACCAGACTTTGCAAGAGTGAAATGGACTCTTAAATGGGAAAGAGGAATTATACA
AAGAGGGCAAAGAAAGAGCTGAAGAAGTGTAGAGAGCACAGTGTTTATAAACTTTAATAC
AGAAAATCTATTTGATATTTATTAAACTTGGTTTCTCCAGCTATGGTTTGGCATTATACA
AAGCATCTTAATGACACAGTAGAGTTAAAAAGATCTTTACAAATTGAAATGTGATACCCT
TGTCTCCAAATATTTTAATTGCCATAAATTTGTTTAAAAATACACATTAAACGCATGTTT
GACACTCTAAACGTTCTATAATCTCAATACCACAAAATACATATAATATACTATACAGAT
GTGGAAAAATCTAGTTAGTATATAATACTTTGCTCACCATTAACAGCTTTATTATGTGAA
ATGCACATACTGACTTAGAAATCCTAGCTTTTGAGCCCCAAAGTACCTCTGATATTTTTA
ATGTATTGCAACAAATAAAAAAATCACAGTATATAATTGAAATTTTGGTTGAAAATGTCA
GATGCCTAAATATTTTGGATAAGAGAAATGTAAAACAAAGATCTGGATCATGTACAAAAC
AAAGGCATCCTATCAGACACTAACAGTACCTTTCTGCAGAATCAACAAGGCTTTTTAATT
TATCAGCGGCATTACCTCCCCTCCAAAACCCTCCCCAACTATCAAACCAGTATTCACCAA
ATAATTTTAATTTCAAATAAGATAAAAGGATTTTCAATAAATATATAAGCATTTCTATCC
TCCATATACAAAATTTCTTAAAACCATTCAAAACGGAGGCTAGATAGAAATTTTCCTAAC
TGTGCTTACCAACCCCACACCTGGCCCTCAAAGGTGATGCCTCTGCAGGCACTACCAACT
GGGCCAGCTCTGTTGGTGAGCCCTATCCACTGTAATCTGTTCATTGGGTGCCTGTAAAGA |
|
gi|15282132|emb|CAC51475.1| |
Protein identifier
|
gi|15282132|emb|CAC51475.1| |
|
280-391, + strand, RNAz p=0.761935 |
|
926-1037, + strand, RNAz p=0.79913 |
|
1278-1397, - strand, RNAz p=0.689818 |
|
1746-1889, - strand, RNAz p=0.973426 |
|
1757-1889, - strand, RNAz p=0.98097 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
280-391, + strand, RNAz p=0.761935 |
|
926-1037, + strand, RNAz p=0.79913 |
|
1278-1397, - strand, RNAz p=0.689818 |
|
1746-1889, - strand, RNAz p=0.973426 |
|
1757-1889, - strand, RNAz p=0.98097 |
|
3' of AY052782, + |
|
5' of AF173886, - |
Human gene identifier and UTR site,
human gene reading direction
|
3' of AY052782, + |
|
5' of AF173886, - |
|
204-666, gnl|bosTau2|chr7 (28501217-28501709) |
|
204-666, gnl|Hg17|chr5 (132237999-132238458) |
|
204-666, gnl|Mm7|chr11 (53379208-53378759) |
| |
|
926-1889, gnl|bosTau2|chr7 (28502401-28503362) |
|
926-1889, gnl|canFam2|chr11 (24164097-24164720) |
|
926-1889, gnl|dasNov1|scaffold_1780 (44501-45111) |
|
926-1889, gnl|echTel1|scaffold_307517 (4099-4728) |
|
926-1889, gnl|galGal2|chr13 (16102472-16103117) |
|
926-1889, gnl|hg17|chr18 (61955839-61956418) |
|
926-1889, gnl|Hg17|chr5 (132238846-132239790) |
|
926-1889, gnl|loxAfr1|scaffold_38190 (14925-14302) |
|
926-1889, gnl|mm7|chr11 (53377991-53377372) |
|
926-1889, gnl|Mm7|chr11 (53378140-53377201) |
|
926-1889, gnl|monDom2|scaffold_6 (92348871-92348208) |
|
926-1889, gnl|oryCun1|scaffold_213787 (18196-18827) |
|
926-1889, gnl|panTro1|chr17 (58815550-58816129) |
|
926-1889, gnl|rheMac2|chr6 (129280278-129280901) |
|
926-1889, gnl|rn3|chr10 (38888866-38888250) |
|
926-1889, gnl|xenTro1|scaffold_473 (833565-834162) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
204-666, gnl|bosTau2|chr7 (28501217-28501709) |
|
204-666, gnl|Hg17|chr5 (132237999-132238458) |
|
204-666, gnl|Mm7|chr11 (53379208-53378759) |
| |
|
926-1889, gnl|bosTau2|chr7 (28502401-28503362) |
|
926-1889, gnl|canFam2|chr11 (24164097-24164720) |
|
926-1889, gnl|dasNov1|scaffold_1780 (44501-45111) |
|
926-1889, gnl|echTel1|scaffold_307517 (4099-4728) |
|
926-1889, gnl|galGal2|chr13 (16102472-16103117) |
|
926-1889, gnl|hg17|chr18 (61955839-61956418) |
|
926-1889, gnl|Hg17|chr5 (132238846-132239790) |
|
926-1889, gnl|loxAfr1|scaffold_38190 (14925-14302) |
|
926-1889, gnl|mm7|chr11 (53377991-53377372) |
|
926-1889, gnl|Mm7|chr11 (53378140-53377201) |
|
926-1889, gnl|monDom2|scaffold_6 (92348871-92348208) |
|
926-1889, gnl|oryCun1|scaffold_213787 (18196-18827) |
|
926-1889, gnl|panTro1|chr17 (58815550-58816129) |
|
926-1889, gnl|rheMac2|chr6 (129280278-129280901) |
|
926-1889, gnl|rn3|chr10 (38888866-38888250) |
|
926-1889, gnl|xenTro1|scaffold_473 (833565-834162) |
|
aor (0.585823) |
|
gul (0.532765) |
|
sin (0.524843) |
|
pro (0.512033) |
|
kid (0.389206) |
|
mga (0.32041) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
fco (0.157208) |
|
isp (0.150376) |
|
ski (0.146735) |
|
nca (0.136874) |
|
ova (0.129132) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ese (0.126502) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
aor (0.585823) |
|
gul (0.532765) |
|
sin (0.524843) |
|
pro (0.512033) |
|
kid (0.389206) |
|
mga (0.32041) |
|
tra (0.246184) |
|
cbe (0.239234) |
|
ebs (0.236602) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
fco (0.157208) |
|
isp (0.150376) |
|
ski (0.146735) |
|
nca (0.136874) |
|
ova (0.129132) |
|
ret (0.128733) |
|
sug (0.127291) |
|
ese (0.126502) |
|
spc (0.113366) |
|
jej (0.0989218) |
