Ss1.1-Pig4-TMW8032C16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAATTGATTCTGTCTGCTGAAACTCGGAGGCGAGCAGAGGCCCAGTGGTCTTGCGCGG ATTGGTAAGCGTCTTCGCGGCTCGCGTTCTTGCCAGCTGACCTCAGGTGAGGAGCTGCCA GATACTTTTGCCATATGAGGTTGAATATGGCAGAAGAAGAGGACTATATGTCTGATGCCT TCATTAATGTCCAAGAAGATATCAGGCCGGGCTTGCCAATGCTGAGACAAATCCGGGAAG CCCATCGAAAAGAAGAAAAGCAGCAAGAAGCTAATTTGAAAAATAGGCAGAAGAGTTTAA AAGAAGAAGAACAAGAGAGACGTGACATTGGGTTGAAGAACGCACTAGGCTGTGAAAACA AAGGGTTTGCTTTGCTCCAAAAGATGGGATATAAAAGTGGCCAGGCACTTGGCAAGAGTG GAGATGGTATTGTTGAACCAATTCCTCTCAGTGTCAAAACAGGGAAAAGTGGCATTGGTC ATGAGACATTTTTGAAACGGAAAGCAGAAGAAAAATTAGAAAGCTACAGAAGAAAAATTC ACATGAAAAACCAAGCTGAAGAAAAAGCTGCAGAACAGTTTCGAATGCGACTTAAAAATA AGCAAGATGAAATGAAGCTAGAAGGAGATCTTAGAAGAAGCCAGAGAGCCTGTCAACAAT TGGATACTCAGAAGAACATTCAGGTTCCCAGAGAGGCATGGTACTGGTTGAGTCCTGAAG AGGAGACTGAAGAAGAGGAAGAAGAAGATGAAGATGAATATAAGAGTGAAGATTTAAGTG TACTGGAAAAATTACAAATATTGACTAGTTATTTAAGAGAAGAACATCTGTATTGTATTT GGTGTGGAACAGCCTATGAAGATAAAGAAGACCTGTCTTCAAATTGCCCAGGGCCAACTT CTGCAGATCATGACTAAGATTATTCTCAATAAAGTCAAAGCTTGCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAATTGATTCTGTCTGCTGAAACTCGGAGGCGAGCAGAGGCCCAGTGGTCTTGCGCGG ATTGGTAAGCGTCTTCGCGGCTCGCGTTCTTGCCAGCTGACCTCAGGTGAGGAGCTGCCA GATACTTTTGCCATATGAGGTTGAATATGGCAGAAGAAGAGGACTATATGTCTGATGCCT TCATTAATGTCCAAGAAGATATCAGGCCGGGCTTGCCAATGCTGAGACAAATCCGGGAAG CCCATCGAAAAGAAGAAAAGCAGCAAGAAGCTAATTTGAAAAATAGGCAGAAGAGTTTAA AAGAAGAAGAACAAGAGAGACGTGACATTGGGTTGAAGAACGCACTAGGCTGTGAAAACA AAGGGTTTGCTTTGCTCCAAAAGATGGGATATAAAAGTGGCCAGGCACTTGGCAAGAGTG GAGATGGTATTGTTGAACCAATTCCTCTCAGTGTCAAAACAGGGAAAAGTGGCATTGGTC ATGAGACATTTTTGAAACGGAAAGCAGAAGAAAAATTAGAAAGCTACAGAAGAAAAATTC ACATGAAAAACCAAGCTGAAGAAAAAGCTGCAGAACAGTTTCGAATGCGACTTAAAAATA AGCAAGATGAAATGAAGCTAGAAGGAGATCTTAGAAGAAGCCAGAGAGCCTGTCAACAAT TGGATACTCAGAAGAACATTCAGGTTCCCAGAGAGGCATGGTACTGGTTGAGTCCTGAAG AGGAGACTGAAGAAGAGGAAGAAGAAGATGAAGATGAATATAAGAGTGAAGATTTAAGTG TACTGGAAAAATTACAAATATTGACTAGTTATTTAAGAGAAGAACATCTGTATTGTATTT GGTGTGGAACAGCCTATGAAGATAAAGAAGACCTGTCTTCAAATTGCCCAGGGCCAACTT CTGCAGATCATGACTAAGATTATTCTCAATAAAGTCAAAGCTTGCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 194-424, gnl|bosTau2|chr11 (18712680-18712910) | |
| 194-424, gnl|canFam2|chr17 (32587033-32586876) | |
| 194-424, gnl|danRer3|chr18 (616662-616507) | |
| 194-424, gnl|fr1|chrUn (15217103-15216951) | |
| 194-424, gnl|galGal2|chr3 (28318091-28318248) | |
| 194-424, gnl|Hg17|chr2 (37228434-37228664) | |
| 194-424, gnl|hg17|chr3 (73314848-73315005) | |
| 194-424, gnl|loxAfr1|scaffold_3365 (71082-70925) | |
| 194-424, gnl|mm7|chr17 (77139768-77139612) | |
| 194-424, gnl|Mm7|chr17 (77139541-77139771) | |
| 194-424, gnl|monDom2|scaffold_31 (21843081-21842854) | |
| 194-424, gnl|oryCun1|scaffold_175748 (99258-99102) | |
| 194-424, gnl|panTro1|chr12 (38683392-38683237) | |
| 194-424, gnl|rheMac2|chr2 (63018380-63018226) | |
| 194-424, gnl|rn3|chr6 (1623590-1623434) | |
| 194-424, gnl|tetNig1|chr17 (2131926-2132079) | |
| 194-424, gnl|xenTro1|scaffold_446 (677877-678033) | |
| 460-583, gnl|bosTau2|chr11 (18714853-18714976) | |
| 460-583, gnl|canFam2|chr17 (32588833-32588710) | |
| 460-583, gnl|canFam2|chr17 (32588697-32588841) | |
| 460-583, gnl|danRer3|chr18 (618019-617918) | |
| 460-583, gnl|danRer3|chr18 (617905-618039) | |
| 460-583, gnl|dasNov1|scaffold_11249 (17314-17191) | |
| 460-583, gnl|dasNov1|scaffold_11249 (17178-17322) | |
| 460-583, gnl|echTel1|scaffold_233657 (448-325) | |
| 460-583, gnl|echTel1|scaffold_233657 (312-456) | |
| 460-583, gnl|fr1|chrUn (15217319-15217463) | |
| 460-583, gnl|galGal2|chr3 (28316766-28316886) | |
| 460-583, gnl|galGal2|chr3 (28316899-28316757) | |
| 460-583, gnl|hg17|chr2 (37230695-37230839) | |
| 460-583, gnl|Hg17|chr2 (37230707-37230830) | |
| 460-583, gnl|hg17|chr3 (73314682-73314809) | |
| 460-583, gnl|loxAfr1|scaffold_3365 (74153-74034) | |
| 460-583, gnl|loxAfr1|scaffold_3365 (74017-74161) | |
| 460-583, gnl|mm7|chr17 (77141638-77141515) | |
| 460-583, gnl|mm7|chr17 (77141502-77141646) | |
| 460-583, gnl|Mm7|chr17 (77141514-77141637) | |
| 460-583, gnl|monDom2|scaffold_1 (134824790-134824646) | |
| 460-583, gnl|monDom2|scaffold_31 (21843243-21843120) | |
| 460-583, gnl|oryCun1|scaffold_175748 (104508-104389) | |
| 460-583, gnl|oryCun1|scaffold_175748 (104372-104516) | |
| 460-583, gnl|panTro1|chr12 (38685569-38685446) | |
| 460-583, gnl|panTro1|chr12 (38685433-38685577) | |
| 460-583, gnl|rheMac2|chr13 (37080865-37081009) | |
| 460-583, gnl|rheMac2|chr2 (63018543-63018419) | |
| 460-583, gnl|rn3|chr6 (1625271-1625152) | |
| 460-583, gnl|rn3|chr6 (1625135-1625279) | |
| 460-583, gnl|tetNig1|chr17 (2131729-2131585) | |
| 460-583, gnl|xenTro1|scaffold_446 (672772-672888) | |
| 460-583, gnl|xenTro1|scaffold_446 (672896-672765) | |
| 673-782, gnl|bosTau2|chr11 (18716357-18716478) | |
| 673-782, gnl|Hg17|chr2 (37232874-37232992) | |
| 673-782, gnl|Mm7|chr17 (77142665-77142786) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 194-424, gnl|bosTau2|chr11 (18712680-18712910) | |
| 194-424, gnl|canFam2|chr17 (32587033-32586876) | |
| 194-424, gnl|danRer3|chr18 (616662-616507) | |
| 194-424, gnl|fr1|chrUn (15217103-15216951) | |
| 194-424, gnl|galGal2|chr3 (28318091-28318248) | |
| 194-424, gnl|Hg17|chr2 (37228434-37228664) | |
| 194-424, gnl|hg17|chr3 (73314848-73315005) | |
| 194-424, gnl|loxAfr1|scaffold_3365 (71082-70925) | |
| 194-424, gnl|mm7|chr17 (77139768-77139612) | |
| 194-424, gnl|Mm7|chr17 (77139541-77139771) | |
| 194-424, gnl|monDom2|scaffold_31 (21843081-21842854) | |
| 194-424, gnl|oryCun1|scaffold_175748 (99258-99102) | |
| 194-424, gnl|panTro1|chr12 (38683392-38683237) | |
| 194-424, gnl|rheMac2|chr2 (63018380-63018226) | |
| 194-424, gnl|rn3|chr6 (1623590-1623434) | |
| 194-424, gnl|tetNig1|chr17 (2131926-2132079) | |
| 194-424, gnl|xenTro1|scaffold_446 (677877-678033) | |
| 460-583, gnl|bosTau2|chr11 (18714853-18714976) | |
| 460-583, gnl|canFam2|chr17 (32588833-32588710) | |
| 460-583, gnl|canFam2|chr17 (32588697-32588841) | |
| 460-583, gnl|danRer3|chr18 (618019-617918) | |
| 460-583, gnl|danRer3|chr18 (617905-618039) | |
| 460-583, gnl|dasNov1|scaffold_11249 (17314-17191) | |
| 460-583, gnl|dasNov1|scaffold_11249 (17178-17322) | |
| 460-583, gnl|echTel1|scaffold_233657 (448-325) | |
| 460-583, gnl|echTel1|scaffold_233657 (312-456) | |
| 460-583, gnl|fr1|chrUn (15217319-15217463) | |
| 460-583, gnl|galGal2|chr3 (28316766-28316886) | |
| 460-583, gnl|galGal2|chr3 (28316899-28316757) | |
| 460-583, gnl|hg17|chr2 (37230695-37230839) | |
| 460-583, gnl|Hg17|chr2 (37230707-37230830) | |
| 460-583, gnl|hg17|chr3 (73314682-73314809) | |
| 460-583, gnl|loxAfr1|scaffold_3365 (74153-74034) | |
| 460-583, gnl|loxAfr1|scaffold_3365 (74017-74161) | |
| 460-583, gnl|mm7|chr17 (77141638-77141515) | |
| 460-583, gnl|mm7|chr17 (77141502-77141646) | |
| 460-583, gnl|Mm7|chr17 (77141514-77141637) | |
| 460-583, gnl|monDom2|scaffold_1 (134824790-134824646) | |
| 460-583, gnl|monDom2|scaffold_31 (21843243-21843120) | |
| 460-583, gnl|oryCun1|scaffold_175748 (104508-104389) | |
| 460-583, gnl|oryCun1|scaffold_175748 (104372-104516) | |
| 460-583, gnl|panTro1|chr12 (38685569-38685446) | |
| 460-583, gnl|panTro1|chr12 (38685433-38685577) | |
| 460-583, gnl|rheMac2|chr13 (37080865-37081009) | |
| 460-583, gnl|rheMac2|chr2 (63018543-63018419) | |
| 460-583, gnl|rn3|chr6 (1625271-1625152) | |
| 460-583, gnl|rn3|chr6 (1625135-1625279) | |
| 460-583, gnl|tetNig1|chr17 (2131729-2131585) | |
| 460-583, gnl|xenTro1|scaffold_446 (672772-672888) | |
| 460-583, gnl|xenTro1|scaffold_446 (672896-672765) | |
| 673-782, gnl|bosTau2|chr11 (18716357-18716478) | |
| 673-782, gnl|Hg17|chr2 (37232874-37232992) | |
| 673-782, gnl|Mm7|chr17 (77142665-77142786) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cte (0.58548) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| ret (0.3862) | |
| fco (0.314416) | |
| ova (0.258264) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| nca (0.136874) | |
| ste (0.135208) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| cbe (0.478469) | |
| spl (0.429553) | |
| ret (0.3862) | |
| fco (0.314416) | |
| ova (0.258264) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| nca (0.136874) | |
| ste (0.135208) | |
| bla (0.124347) | |
| tra (0.123092) |