Non-Coding RNA Search

Ss1.1-Pig4-TMW8032C19.3

Sequence:


               
               GACACTGAGCCGTAGGCAGCTTATACATCTGAGTGACGGGAAGAGGAAGTGTGTAACAGT
ACATACTAGGTACTTGATTTTATTGACTGACAAGCAGGATTCCAGCTGTGTCAGTGTTGG
TGTGTAACTCCCTTACGCATAAACATTCTTAAGAACGAAGCAAGCTGTAGCTGTGACCGC
TCAGGATGAATTAAAAGAAGTCTTTGAAGATGCCGTGGAGATCAGATTAGTCAGCAAGGA
TGGAAAGAGTAAAGGGATTGCTTATATAGAATTTAAGACAGAAGCTGATGCAGAGAAAAC
CTTGGAAGAAAAGCAGGGAACAGAAATAGATGGGCGATCCATTTCCCTGTACTACACTGG
AGAGAAAGGTCAAAATCAAGACTTTAGAGGTGGAAAGAATAGCACTTGGAGTGGTGAATC
AAAAACTCTGGTTCTAAGCAATCTCGCCTATAGTGCCACAGAAGAAACCCTTCAGGAAGT
ATTTGAGAAGGCAACGTTTATCAAAGTGCCCCAGAACCAAAACGGCAAATCTAAAGGGTA
TGCATTTATAGAATTTGCTTCGTTTGAAGATGCTAAAGAAGCTTTAAATTCATGTAATAA
AAGGGAAATTGAGGGCAGAGCCATCAGACTGGAGTTGCAAGGACCCAGGGGATCACCTAA
CGCAAGAAGCCAGCCATCCAAAACTCTGTTTGTGAAAGGTCTGTCCGAGGAAACCACAGA
AGAGACATTAAAGGAGTCGTTTGACGGCTCTATTCGTGCAAGGATCGTCACTGACCGGGA
GACTGGGTCTTCCAAGGGGTTTGGTTTTGTGGACTTCAACAGTGAGGAAGATGCCAAAGC
CGCCAAGGAGGCCATGGAAGATGGTGAAATTGATGGAAACAAAGTTACTTTGGACTGGGC
CAAGCCTAAGGGCGAAGGTGGCTTTGGTGGCCGAGGAGGAGGCAGGGGCGGCTTTGGAGG
TCGAGGTGGTGGCAGAGGTGGCCGCGGTGGATTTGGTGGCAGAGGCCGGGGAGGCTTTGG
AGGGCGAGGCGGCTTCCGAGGAGGCAGAGGAGGAGGAGGAGGAGACCACAAGCCACAAGG
AAAGAAGACCAAGTTTGAATAGTTTCTTCTATCCCTGTCGTTCCTCTTCCATTTGAAAGA
AAGGACTCTGGGGTTTTTACTCTGTTACCTGATCACTGGCAGAGCCTTCTGAGGACATTC
CAAGACAGCGTGCAGCCCTGTGGTCTCCTTGGAAATCCGTATAGATAACATTTCAAAGGC
GATAACCCTGTTGGTTTTGACTGGATATTGATATAAACTTTTTAAAGAGATGAGTGATAG
AGCTAACCCTTATCTGTAAGTTTTGAATTTATATTGTTTCTTCCCATGTACAAAACCATT
TTTTTCCTACGAAGTTTTTTTTTTTTTTTTTTTTTTTTGCCTTGGGGGGTTGTAAAAGAA
AGCAGAATGTTTTATCATGATTTTTGCTTCAACTTCGGGACAAATTAAAAGTCCTAAACT
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACTGAGCCGTAGGCAGCTTATACATCTGAGTGACGGGAAGAGGAAGTGTGTAACAGT
ACATACTAGGTACTTGATTTTATTGACTGACAAGCAGGATTCCAGCTGTGTCAGTGTTGG
TGTGTAACTCCCTTACGCATAAACATTCTTAAGAACGAAGCAAGCTGTAGCTGTGACCGC
TCAGGATGAATTAAAAGAAGTCTTTGAAGATGCCGTGGAGATCAGATTAGTCAGCAAGGA
TGGAAAGAGTAAAGGGATTGCTTATATAGAATTTAAGACAGAAGCTGATGCAGAGAAAAC
CTTGGAAGAAAAGCAGGGAACAGAAATAGATGGGCGATCCATTTCCCTGTACTACACTGG
AGAGAAAGGTCAAAATCAAGACTTTAGAGGTGGAAAGAATAGCACTTGGAGTGGTGAATC
AAAAACTCTGGTTCTAAGCAATCTCGCCTATAGTGCCACAGAAGAAACCCTTCAGGAAGT
ATTTGAGAAGGCAACGTTTATCAAAGTGCCCCAGAACCAAAACGGCAAATCTAAAGGGTA
TGCATTTATAGAATTTGCTTCGTTTGAAGATGCTAAAGAAGCTTTAAATTCATGTAATAA
AAGGGAAATTGAGGGCAGAGCCATCAGACTGGAGTTGCAAGGACCCAGGGGATCACCTAA
CGCAAGAAGCCAGCCATCCAAAACTCTGTTTGTGAAAGGTCTGTCCGAGGAAACCACAGA
AGAGACATTAAAGGAGTCGTTTGACGGCTCTATTCGTGCAAGGATCGTCACTGACCGGGA
GACTGGGTCTTCCAAGGGGTTTGGTTTTGTGGACTTCAACAGTGAGGAAGATGCCAAAGC
CGCCAAGGAGGCCATGGAAGATGGTGAAATTGATGGAAACAAAGTTACTTTGGACTGGGC
CAAGCCTAAGGGCGAAGGTGGCTTTGGTGGCCGAGGAGGAGGCAGGGGCGGCTTTGGAGG
TCGAGGTGGTGGCAGAGGTGGCCGCGGTGGATTTGGTGGCAGAGGCCGGGGAGGCTTTGG
AGGGCGAGGCGGCTTCCGAGGAGGCAGAGGAGGAGGAGGAGGAGACCACAAGCCACAAGG
AAAGAAGACCAAGTTTGAATAGTTTCTTCTATCCCTGTCGTTCCTCTTCCATTTGAAAGA
AAGGACTCTGGGGTTTTTACTCTGTTACCTGATCACTGGCAGAGCCTTCTGAGGACATTC
CAAGACAGCGTGCAGCCCTGTGGTCTCCTTGGAAATCCGTATAGATAACATTTCAAAGGC
GATAACCCTGTTGGTTTTGACTGGATATTGATATAAACTTTTTAAAGAGATGAGTGATAG
AGCTAACCCTTATCTGTAAGTTTTGAATTTATATTGTTTCTTCCCATGTACAAAACCATT
TTTTTCCTACGAAGTTTTTTTTTTTTTTTTTTTTTTTTGCCTTGGGGGGTTGTAAAAGAA
AGCAGAATGTTTTATCATGATTTTTGCTTCAACTTCGGGACAAATTAAAAGTCCTAAACT
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ZS99_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ZS99_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1420-1527, - strand, RNAz p=0.685745

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1420-1527, - strand, RNAz p=0.685745

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1074-1527, gnl|bosTau2|chr1 (28792483-28792048)
               

               
               1074-1527, gnl|Hg17|chr2 (232145435-232144971)
               

               
               1074-1527, gnl|Mm7|chr7 (51484654-51484197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1074-1527, gnl|bosTau2|chr1 (28792483-28792048)
               

               
               1074-1527, gnl|Hg17|chr2 (232145435-232144971)
               

               
               1074-1527, gnl|Mm7|chr7 (51484654-51484197)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               nca (0.136874)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	1074-1527, gnl\|bosTau2\|chr1 (28792483-28792048)
	1074-1527, gnl\|Hg17\|chr2 (232145435-232144971)
	1074-1527, gnl\|Mm7\|chr7 (51484654-51484197)

	amn (0.417711)
	elu (0.385356)
	ssp (0.271039)
	nms (0.213858)
	cty (0.20816)
	col (0.195008)
	mcp (0.170648)
	nco (0.161734)
	lun (0.150489)
	nca (0.136874)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	nbm (0.0993246)