Non-Coding RNA Search

Ss1.1-Pig4-TMW8032C20.5

Sequence:


               
               TCAGAATGACACCATATTCTTAAACATATTCCTCCCCTGAAGCGTGTATGTGTGTGATGC
CATATTTCTTTTTCAGGTAAACGCAGTCTTCCTTATAAAAATGAAATTAAACCTATTGCT
CTCTCAGTTCTTTCATATTCTAACAATAAATAAAACAAAAAAGATCACTGACTGTGCATT
GTACCTGTATATTATAGCTTATGGTTGTTACCAGGAAGCTCTCTGAGAAAAAAAGGTAAG
CCTCCAGGTAAACAGCTAGTGGAGGTTTTACATTTGTTTGCACATCTCAGTATATTCTGT
TGAGGTCAAGTTTGCACAGTCTTCTGACTTCTGAACAAACGATAGAATTTAATTGTTTAA
AATTTGTCTTAAATGCCAGTAATATGGCTCTGGATTATCAGCTAATCTTCAATTCTGTGG
TAAATCTTTGAGCTATTGAGTATCTTTGAGATGGGTTGAATTCAACTTATATTCAACTGA
AAACTGTCTTAATCTTTCCTCTATGTGTATGAATTATTTTTGTTACAAAGCCACTGATAT
GTGCACAATTGTAATTTTACTCAAGTATGTTGCAGTTGTAAATATTAGAGAGTTTAATCT
CTTGCTCTACTTTTAATTTAGCAATTACCTGATTTGCCAGTAGCGTTTTAATTTTTTTTA
AGATAATTGTTCATTATTTTGTCAATGTTATTTGAACTTAGGATACTAGGAGCCTCTTTC
TAGGGACTTTGCCTAGCTAGCATGTCCTAACTTTGTTCTTGTCTTGCATAACTTTAGTAA
TCTTTGTCATTACATGTAACTTTGTTGCTCTGTATGGCATATTATTGTATCCATAAACGT
GGTAATTTTGATACAGTTATACTTTTACAGTGGTACATAATCCAAGGACTAGTATAGAAT
TAAGATGAGTGCAAGATGAGGGAGGGAAGGGTTTTCTTCTTGGTAATTTAGATGTGAAAC
CTCTAAGGAGCTATCATGTGAAACGACATAGGGTTGTTGTGCTACTGTATAATTGGGGGT
GATGATACCAAGAATTTTAATAAGATTTTGTAAAGAATATCCAGAAAAGTAGTGAGCTTA
TTTTCAGTATGACATAGAAAAACAATGTGAATATTTAAGGTCTGTGACTATACTTAAACT
TCACTAAGGATTTCAGAATTGTTTTGAGATGTGAGAATAAAGGTAATTTTGTTGAATCTT
TATTGGTGCTAATGATGGACAGTTTAAAAGGTAGCTAGTGTATATTGTTATGGGTCAGTA
CTTATTAGTACTTCCAAAATTGAATTTGAAATGCTGTGTATTCACTTTTCACTCTGTAAA
TGTAATTCTTTACAATGACTATTTATTAAAGGGCAGCCAGTTGTAATTTTTACAGGATTG
TGTGAGCTATTCAAACTCTTTAACCTCTGAACAGGATATTAGCTTCCAAAACAATGGGGA
TAAATATGGAAATTCTTTCAAGCTTCATTTCCACTAAATGAGAACCCTTATAATTCATAT
TGCCATGAATTTAACCATCTCATTTGCATAAAGTAGTTTCATCAGCCTGGTCCCAATAGG
CTCAACCAAAGAAAAAGACTCCCATGAATGGACATTATTACTGAGTCTTCTTGTAAGTAG
CCATAAATAAACCAAAATAGTATCAAATTTAGGTATAAAATTCCACATGTGCAAAGTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGAATGACACCATATTCTTAAACATATTCCTCCCCTGAAGCGTGTATGTGTGTGATGC
CATATTTCTTTTTCAGGTAAACGCAGTCTTCCTTATAAAAATGAAATTAAACCTATTGCT
CTCTCAGTTCTTTCATATTCTAACAATAAATAAAACAAAAAAGATCACTGACTGTGCATT
GTACCTGTATATTATAGCTTATGGTTGTTACCAGGAAGCTCTCTGAGAAAAAAAGGTAAG
CCTCCAGGTAAACAGCTAGTGGAGGTTTTACATTTGTTTGCACATCTCAGTATATTCTGT
TGAGGTCAAGTTTGCACAGTCTTCTGACTTCTGAACAAACGATAGAATTTAATTGTTTAA
AATTTGTCTTAAATGCCAGTAATATGGCTCTGGATTATCAGCTAATCTTCAATTCTGTGG
TAAATCTTTGAGCTATTGAGTATCTTTGAGATGGGTTGAATTCAACTTATATTCAACTGA
AAACTGTCTTAATCTTTCCTCTATGTGTATGAATTATTTTTGTTACAAAGCCACTGATAT
GTGCACAATTGTAATTTTACTCAAGTATGTTGCAGTTGTAAATATTAGAGAGTTTAATCT
CTTGCTCTACTTTTAATTTAGCAATTACCTGATTTGCCAGTAGCGTTTTAATTTTTTTTA
AGATAATTGTTCATTATTTTGTCAATGTTATTTGAACTTAGGATACTAGGAGCCTCTTTC
TAGGGACTTTGCCTAGCTAGCATGTCCTAACTTTGTTCTTGTCTTGCATAACTTTAGTAA
TCTTTGTCATTACATGTAACTTTGTTGCTCTGTATGGCATATTATTGTATCCATAAACGT
GGTAATTTTGATACAGTTATACTTTTACAGTGGTACATAATCCAAGGACTAGTATAGAAT
TAAGATGAGTGCAAGATGAGGGAGGGAAGGGTTTTCTTCTTGGTAATTTAGATGTGAAAC
CTCTAAGGAGCTATCATGTGAAACGACATAGGGTTGTTGTGCTACTGTATAATTGGGGGT
GATGATACCAAGAATTTTAATAAGATTTTGTAAAGAATATCCAGAAAAGTAGTGAGCTTA
TTTTCAGTATGACATAGAAAAACAATGTGAATATTTAAGGTCTGTGACTATACTTAAACT
TCACTAAGGATTTCAGAATTGTTTTGAGATGTGAGAATAAAGGTAATTTTGTTGAATCTT
TATTGGTGCTAATGATGGACAGTTTAAAAGGTAGCTAGTGTATATTGTTATGGGTCAGTA
CTTATTAGTACTTCCAAAATTGAATTTGAAATGCTGTGTATTCACTTTTCACTCTGTAAA
TGTAATTCTTTACAATGACTATTTATTAAAGGGCAGCCAGTTGTAATTTTTACAGGATTG
TGTGAGCTATTCAAACTCTTTAACCTCTGAACAGGATATTAGCTTCCAAAACAATGGGGA
TAAATATGGAAATTCTTTCAAGCTTCATTTCCACTAAATGAGAACCCTTATAATTCATAT
TGCCATGAATTTAACCATCTCATTTGCATAAAGTAGTTTCATCAGCCTGGTCCCAATAGG
CTCAACCAAAGAAAAAGACTCCCATGAATGGACATTATTACTGAGTCTTCTTGTAAGTAG
CCATAAATAAACCAAAATAGTATCAAATTTAGGTATAAAATTCCACATGTGCAAAGTACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1124-1337, gnl|bosTau2|chr1 (93586537-93586750)
               

               
               1124-1337, gnl|Hg17|chr2 (135548068-135548271)
               

               
               1124-1337, gnl|Mm7|chrX (82516635-82516414)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1124-1337, gnl|bosTau2|chr1 (93586537-93586750)
               

               
               1124-1337, gnl|Hg17|chr2 (135548068-135548271)
               

               
               1124-1337, gnl|Mm7|chrX (82516635-82516414)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               ret (0.643666)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1124-1337, gnl\|bosTau2\|chr1 (93586537-93586750)
	1124-1337, gnl\|Hg17\|chr2 (135548068-135548271)
	1124-1337, gnl\|Mm7\|chrX (82516635-82516414)

	ret (0.643666)
	gul (0.355177)
	sin (0.349895)
	lin (0.145603)
	spl (0.143184)
	nmm (0.132802)
	sug (0.127291)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)
	ldo (0.0970026)