Non-Coding RNA Search

Ss1.1-Pig4-TMW8032D05.3

Sequence:


               
               GGGCGTCGTGCAGCAGTTCCTGGTGTCACTGACGACCAGCTCCGACGAGAGCCTGCGCTT
CCTGAGCTTCAGGCTGGACTTCAACGAGCACTACCGGGCACGGGAGCCCCGGCTGCGCGT
GTCCCTGGGCACCAGAGGCCGCCGCAGCTCCCACACGTGAGGCGCCCGCCCGCCTCCTCC
CGCGGCCACGCAGCCCTGCCTCGGATCTGCCGCGGGGCCAGACGGCTTGTCCACGTCGGA
GGTGAAGGTGTCTGCAACATCACTGCGCTAGACAGGCTGGCTGCACTATTCAGATTTATT
TTTAAAGTCTTCGTATTTAAAATATTCCACACTTTGTTGAGGCTTCTTAAGCCGTCCACG
ATATATTTGCCACTTTTTAAAAAATCTTCATTTCTTTTAGAGAAAATTAGGGCGATGGAT
ATTCATTCATCAGTTAAGATGGTAAATGTCAGTGCTATTTTTTTAACATCCTCTTTAGAG
ATACGTTTTGTTAATATAATAAATGAAATGGAAACTGAATGTCCCTACTAAGAAAACTAT
TATATAGAGCATTTTATTTTGTTTTTTAGTGTAAAATATTAACCTCTGTAAGGACCTTTC
TATCTCAGTGCATTTTCACGTTTATCTTTTTTTCTCTTCCTTCAAAGTTTACATTTTTAT
ATTTAATTTACTCTCTTAGATCACTTGGAAAATAGTGTAGAAAAAGAGCAGGTGTGACAT
AGAACAAAACATCCTGAAGCCTGGATTTCTTGAACCATCAGCTGAATCAGCATGTAAATA
TGAATGACTAGAAAGCTGATGAAGTATTTTATTTTCAAAATTCTGATAAGCGTTGGAGAG
CAGCTGACTTGAATAATGAAGATTCTCTTTTTCCTTTGCCTATTTTTTCATTGTAAATAT
TTGTATACTATTGACCAGATGTTGGGGGGACATTTTTTGTAAAAATGTCATATCAGGTCA
CATAAATCTGCCTTTATCATGTTGCATAAGTGAAAACTTATAAAATTAAAAGCAATTATC
TTCAGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGTCGTGCAGCAGTTCCTGGTGTCACTGACGACCAGCTCCGACGAGAGCCTGCGCTT
CCTGAGCTTCAGGCTGGACTTCAACGAGCACTACCGGGCACGGGAGCCCCGGCTGCGCGT
GTCCCTGGGCACCAGAGGCCGCCGCAGCTCCCACACGTGAGGCGCCCGCCCGCCTCCTCC
CGCGGCCACGCAGCCCTGCCTCGGATCTGCCGCGGGGCCAGACGGCTTGTCCACGTCGGA
GGTGAAGGTGTCTGCAACATCACTGCGCTAGACAGGCTGGCTGCACTATTCAGATTTATT
TTTAAAGTCTTCGTATTTAAAATATTCCACACTTTGTTGAGGCTTCTTAAGCCGTCCACG
ATATATTTGCCACTTTTTAAAAAATCTTCATTTCTTTTAGAGAAAATTAGGGCGATGGAT
ATTCATTCATCAGTTAAGATGGTAAATGTCAGTGCTATTTTTTTAACATCCTCTTTAGAG
ATACGTTTTGTTAATATAATAAATGAAATGGAAACTGAATGTCCCTACTAAGAAAACTAT
TATATAGAGCATTTTATTTTGTTTTTTAGTGTAAAATATTAACCTCTGTAAGGACCTTTC
TATCTCAGTGCATTTTCACGTTTATCTTTTTTTCTCTTCCTTCAAAGTTTACATTTTTAT
ATTTAATTTACTCTCTTAGATCACTTGGAAAATAGTGTAGAAAAAGAGCAGGTGTGACAT
AGAACAAAACATCCTGAAGCCTGGATTTCTTGAACCATCAGCTGAATCAGCATGTAAATA
TGAATGACTAGAAAGCTGATGAAGTATTTTATTTTCAAAATTCTGATAAGCGTTGGAGAG
CAGCTGACTTGAATAATGAAGATTCTCTTTTTCCTTTGCCTATTTTTTCATTGTAAATAT
TTGTATACTATTGACCAGATGTTGGGGGGACATTTTTTGTAAAAATGTCATATCAGGTCA
CATAAATCTGCCTTTATCATGTTGCATAAGTGAAAACTTATAAAATTAAAAGCAATTATC
TTCAGAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61861482|ref|XP_607013.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861482|ref|XP_607013.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1026, gnl|bosTau2|chr12 (47157033-47158039)
               

               
               1-1026, gnl|Hg17|chr13 (112188467-112187324)
               

               
               1-1026, gnl|Mm7|chr8 (12589517-12588497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1026, gnl|bosTau2|chr12 (47157033-47158039)
               

               
               1-1026, gnl|Hg17|chr13 (112188467-112187324)
               

               
               1-1026, gnl|Mm7|chr8 (12589517-12588497)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               tra (0.492368)
               

               
               liv (0.438853)
               

               
               elu (0.385356)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               ret (0.257467)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               liv (0.438853)
               

               
               elu (0.385356)
               

               
               rec (0.346141)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               ret (0.257467)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-1026, gnl\|bosTau2\|chr12 (47157033-47158039)
	1-1026, gnl\|Hg17\|chr13 (112188467-112187324)
	1-1026, gnl\|Mm7\|chr8 (12589517-12588497)

	tra (0.492368)
	liv (0.438853)
	elu (0.385356)
	rec (0.346141)
	sme (0.305437)
	bfe (0.299715)
	cte (0.29274)
	ret (0.257467)
	pgl (0.236967)
	mgp (0.230681)
	gul (0.177588)
	cki (0.165235)
	mga (0.160205)
	fco (0.157208)
	tbr (0.154178)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	ste (0.135208)
	ova (0.129132)
	thg (0.126791)
	spc (0.113366)
	ldo (0.0970026)