Non-Coding RNA Search

Ss1.1-Pig4-TMW8032D22.5

Sequence:


               
               GACCCCCCCCATTCCACACACCACGGCAGTCGGAGCGAGGAACGCCCCTACTGTGAAATC
TGTGAGATGTTCGGGCACTGGGCAACCAACTGCAATGATGACGAGACCTTCTGATGAAGC
CTCCCATCAAGAACTGGGCTTTCTCAGATGCGCTGGCATTGAGGCAGTGACCACCAGCAT
CACGTGTGCGGACTTCAGGAGAACTCACGTTTATTTTTTACCCCCACCAACAAATCTAAG
AAAATATTTTGCTCGTCAACAAATCGCCCTTTTAGTCTCCACCTCTAAGTTTTTAAGTTA
GAATAATAAATAGTTAGGTGAGTTTTCACCTCTAATTTTGTCTTCCTGATTTTTAAAAGT
ATTAACCAGACATTGCACCGGATGCCATTACATTTATTGTCCCTAGGGAAACCTCATAGA
ACAATTCCTACCCTTACAATACCTTATTTAAGTAACTTTAAATTATGCCGTTACTTTTCA
TATTTGCACTAAATATTTCCAGGCTGCATTTGTATATTTAGATGTTTTGGTTAAGCTTCA
ACACTGGAATGAGTTGAAAAAAATGTGCCATTTTGCATTTTCATCTACTCATTTAAAGTA
TTTTATTCTTAAAAGAACTATCTGAGCTCTTTGCACTACCTGATGTTAGTAGTGCCTTTA
TTTCATGCTTGATGATACTTAGGTGTGATTATAAAATCATGAAACAGGTCAAGGGAGGGG
AAAGCCCCTGAACTGCTGTGGGTACATTTTATAATCTCTATGCTGCACCCACGTACTCTA
CTGTGGTGTTCTGTTCATTGGTTTTGCATAATTTCAGCTTCTATATATTATATGTATATA
TTTTTGTAAAATCTATATTTTGGGAAAAAACATACACAATGTGTCTTTCTTTTCAGATTT
TTACCTTTATGAAAAATAAAACACTTCAAGATATTCATCAGGACATAACAGACTAGGCCA
GAAATAGCATCTTGTGGCTTTGCAGCTATTTTCTTCTTTTTGTTTTTATTTCTTTATCAG
ATATAAATCACTGGGAGAATTTTCTCCGGATTTTATTTTCCTTCTCCAGCAGATATCCCC
AGCAGTAATTTAATTAGATAATAAGCCACTACAGAACACCTAAATTAACCGATCTACAAT
CTTTACAAGTTTTTTTTTTACTGTGTTTTTAGATGAATGTATGATGAGAAATTCAACATT
AATAATTTTGGATTTTCTTATCACAAAAAAATAAAAATGAAGGACCTCAACCAGGAGAAC
TTTTATCAACCAGTTTGAATCTATTTATCTTCATTTGAATGTCTTCTAGAATATGTAAAA
AGTAATAAATAAATGTATCATCCATGAGACATGTATAATAAGAAGTTCTATAATTGTATA
TATGCCTTTGATGTATTTTCCCCTCGAGATTATCAACTATGTGTTTGACAAGTGAAAGAT
AAACCTGTAATCAGTTCAAATTTTTGGTTATAAACATGAATAGGAACTGTTTCACAAACT
ATGTGTAAAGCAGTATTAAAATTTGAGCAAACAAGTGTTCTGTATCTACATTAATAAAGG
GTTATTCTTTTTTGCCAGTGGTAGTAAACTGGTATTATTCTCAGGTTTATTTGTTGTAAT
GGTTTTTCTACAAATGAACAAGCACTGTAGATCCAAATAGCAATTTCTACTGCCGTTTGT
TGATAAACAGCTTTTAAGAAGTTATCTCAAAGCATTCTATGACCCATTCAGCATAAAATA
AATACCCAAGGTGCTTATCCATTGCTATGTCACACTCTCATTACATGTAAGTGGCACCAG
GTACAACCAACTACATATTGATGCATGAAGTTTTGCGAAGAAACTGGTGAAAATTGCTGT
GATGTTTACCAAAATGACAAATGAACCGAGCATCTGTTTTATGAGTTCTGACTCCACCAC
AGGTAGATATTAATCCAGAGTAGAGTTACTAGCTGAACATTACTTTGACCTTTAAAAAAA
AAAAATACCCTGATAGTAGTCCTTGACTACAGCATTGACTAAACTGATGAAAAGACTCAA
CTACACTTATTGTGGTCATCATTTCACAGTGTATACAGAAATCATTATGTTGTATACCTA
AAGCTAATATAATGTTATATGTCAATTATATCTCAATAAAAATGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCCCCCCATTCCACACACCACGGCAGTCGGAGCGAGGAACGCCCCTACTGTGAAATC
TGTGAGATGTTCGGGCACTGGGCAACCAACTGCAATGATGACGAGACCTTCTGATGAAGC
CTCCCATCAAGAACTGGGCTTTCTCAGATGCGCTGGCATTGAGGCAGTGACCACCAGCAT
CACGTGTGCGGACTTCAGGAGAACTCACGTTTATTTTTTACCCCCACCAACAAATCTAAG
AAAATATTTTGCTCGTCAACAAATCGCCCTTTTAGTCTCCACCTCTAAGTTTTTAAGTTA
GAATAATAAATAGTTAGGTGAGTTTTCACCTCTAATTTTGTCTTCCTGATTTTTAAAAGT
ATTAACCAGACATTGCACCGGATGCCATTACATTTATTGTCCCTAGGGAAACCTCATAGA
ACAATTCCTACCCTTACAATACCTTATTTAAGTAACTTTAAATTATGCCGTTACTTTTCA
TATTTGCACTAAATATTTCCAGGCTGCATTTGTATATTTAGATGTTTTGGTTAAGCTTCA
ACACTGGAATGAGTTGAAAAAAATGTGCCATTTTGCATTTTCATCTACTCATTTAAAGTA
TTTTATTCTTAAAAGAACTATCTGAGCTCTTTGCACTACCTGATGTTAGTAGTGCCTTTA
TTTCATGCTTGATGATACTTAGGTGTGATTATAAAATCATGAAACAGGTCAAGGGAGGGG
AAAGCCCCTGAACTGCTGTGGGTACATTTTATAATCTCTATGCTGCACCCACGTACTCTA
CTGTGGTGTTCTGTTCATTGGTTTTGCATAATTTCAGCTTCTATATATTATATGTATATA
TTTTTGTAAAATCTATATTTTGGGAAAAAACATACACAATGTGTCTTTCTTTTCAGATTT
TTACCTTTATGAAAAATAAAACACTTCAAGATATTCATCAGGACATAACAGACTAGGCCA
GAAATAGCATCTTGTGGCTTTGCAGCTATTTTCTTCTTTTTGTTTTTATTTCTTTATCAG
ATATAAATCACTGGGAGAATTTTCTCCGGATTTTATTTTCCTTCTCCAGCAGATATCCCC
AGCAGTAATTTAATTAGATAATAAGCCACTACAGAACACCTAAATTAACCGATCTACAAT
CTTTACAAGTTTTTTTTTTACTGTGTTTTTAGATGAATGTATGATGAGAAATTCAACATT
AATAATTTTGGATTTTCTTATCACAAAAAAATAAAAATGAAGGACCTCAACCAGGAGAAC
TTTTATCAACCAGTTTGAATCTATTTATCTTCATTTGAATGTCTTCTAGAATATGTAAAA
AGTAATAAATAAATGTATCATCCATGAGACATGTATAATAAGAAGTTCTATAATTGTATA
TATGCCTTTGATGTATTTTCCCCTCGAGATTATCAACTATGTGTTTGACAAGTGAAAGAT
AAACCTGTAATCAGTTCAAATTTTTGGTTATAAACATGAATAGGAACTGTTTCACAAACT
ATGTGTAAAGCAGTATTAAAATTTGAGCAAACAAGTGTTCTGTATCTACATTAATAAAGG
GTTATTCTTTTTTGCCAGTGGTAGTAAACTGGTATTATTCTCAGGTTTATTTGTTGTAAT
GGTTTTTCTACAAATGAACAAGCACTGTAGATCCAAATAGCAATTTCTACTGCCGTTTGT
TGATAAACAGCTTTTAAGAAGTTATCTCAAAGCATTCTATGACCCATTCAGCATAAAATA
AATACCCAAGGTGCTTATCCATTGCTATGTCACACTCTCATTACATGTAAGTGGCACCAG
GTACAACCAACTACATATTGATGCATGAAGTTTTGCGAAGAAACTGGTGAAAATTGCTGT
GATGTTTACCAAAATGACAAATGAACCGAGCATCTGTTTTATGAGTTCTGACTCCACCAC
AGGTAGATATTAATCCAGAGTAGAGTTACTAGCTGAACATTACTTTGACCTTTAAAAAAA
AAAAATACCCTGATAGTAGTCCTTGACTACAGCATTGACTAAACTGATGAAAAGACTCAA
CTACACTTATTGTGGTCATCATTTCACAGTGTATACAGAAATCATTATGTTGTATACCTA
AAGCTAATATAATGTTATATGTCAATTATATCTCAATAAAAATGCATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               552-744, - strand, RNAz p=0.895371
               

               
               1633-1751, - strand, RNAz p=0.86812

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-744, - strand, RNAz p=0.895371
               

               
               1633-1751, - strand, RNAz p=0.86812

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-2040, gnl|bosTau2|chr17 (29026773-29028808)
               

               
               1-2040, gnl|Hg17|chr12 (121282415-121278575)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2040, gnl|bosTau2|chr17 (29026773-29028808)
               

               
               1-2040, gnl|Hg17|chr12 (121282415-121278575)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               bfe (1.19886)
               

               
               fco (1.10046)
               

               
               tbr (0.925069)
               

               
               liv (0.877706)
               

               
               clu (0.598229)
               

               
               sag (0.548145)
               

               
               cbl (0.45919)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.19886)
               

               
               fco (1.10046)
               

               
               tbr (0.925069)
               

               
               liv (0.877706)
               

               
               clu (0.598229)
               

               
               sag (0.548145)
               

               
               cbl (0.45919)
               

               
               lyg (0.399308)
               

               
               aor (0.390549)
               

               
               csk (0.281492)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)

	552-744, - strand, RNAz p=0.895371
	1633-1751, - strand, RNAz p=0.86812

	1-2040, gnl\|bosTau2\|chr17 (29026773-29028808)
	1-2040, gnl\|Hg17\|chr12 (121282415-121278575)

	bfe (1.19886)
	fco (1.10046)
	tbr (0.925069)
	liv (0.877706)
	clu (0.598229)
	sag (0.548145)
	cbl (0.45919)
	lyg (0.399308)
	aor (0.390549)
	csk (0.281492)
	ste (0.270416)
	kid (0.259471)
	nms (0.213858)
	mas (0.210305)
	gul (0.177588)
	rec (0.17307)
	isp (0.150376)
	spl (0.143184)
	nca (0.136874)
	ute (0.132784)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)