Ss1.1-Pig4-TMW8032E02.5.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CTTCCACTTGAAGCTGCAACAGGCATCCCACCCGGAAGCATCCTTCTTAATCCACATACA GGCCAGCCCTTTGTGAATCCAGATGGAAGCCCCGCCATATACAACCCCCCTGCCAGCCAG CAGCCTCTGCGAAGCACGATGGTGGGGCAGTCCCAGCAGCAGCCCCGGCAGCAGCCCTCC CCACCGCAGCAGCAGGTCCAGCCACCTCAGCCGCAGATGGCAGGCCCACTGGTCACTCAG GGGCTGCAAGCTTCCTCCCAGTCAGTGCAATATCCAGCTGTCCCTTTCCCTACCCAGCAT CTCCTGCCAGTGTCTCCGACGCCGCAGTTCCCCATGAGAGAGGATGTGGCCACACAGTTC GGCCAGATGAACCTGAGCCGGCAGTCCTCAGGGGAGACTGCTGAGCCCCCAGCTGGTCCC GTCTACCCGCCGTCCCTCCTGCCACAGCCCACCCAACAGCCAAGCTATGTCATCACCTCC ACAGGCCAGCAGCTCCCAACGGGGGGCTTCTCAGGCTCCGGACCTCCCATCTCCCAGCAA GTCCTCCAGCCCCCTCCCTCGCCACAGGGATTTGTGCAACAGCCTCCAGCTGCACAGATG CCTGTGTATTATTATCCATCTGGCCAGTACCCTACCTCAACTGCTCAGCAGTTCCGGCCT GTAGCCTCAATTCAGTTCAGTGCTCAGAGGGGCCAGCAGATGCCACAGACAGCACAGCAA GCAGGTTACCAGCCGGTCTTGTCTGGTCAACAGGGGTTCCAAAGCCTCATGGGGGTGCAG CAGCCACCTCAGAGTCAGGGTGTGATGAGCAGCCAACAGGGAACTCCAGTGCAAAGCGTC ATGGTCTCCTACCCAACCATGTCTAATTATCAGGTGCCGATGACCCAGGGTTCTCAAGGA CTCCCTCAGCAGTCATACCAACAGCCAATCATGCTACCTAACCAGGCAGGCCAAGGGTCC CTCCCAGCCACTGGAATGCCTGTGTACTGTAACGTCACACCGCCTACCCCTCAAAACAAC CTTAGGCTGATTGGCCCTCACTGCCCTTCCAGCACTGTCCCTGTGATGTCGGCCAGCTGT AGGACCAACTGTGCCAATATGAGCAATGCCGGGTGGCAGGTCAAGTTCTGAGCGCTCTGC CTGTGGTACATTTCTCCAGATATTACTCATGGCCTTTAAGGGAAGAGCAAGGTGGGAAGA TTCACTGAGGACTTAGGTATTCACTCAACACCCAAATGACTGCTGCTGGTATTCTGTAAA AAAACAAAGACTAATCCACACATTAGCTGGTTAATGGTGCATATTTGTCATGTCTGCTAG GTATGCCTTTATAGCTTAGCTAGTGACATGAATTCATCAAGGTAAGATTTTCTCCTACCA CTGAATACCACTGTGTAGATGATAATATCCCTAATTTGGATTATTAGTTTTGTACTTTGT GTTGAGTTTGTGATGCTAAAAGTATTTAAAAATTATATACTGAAATCACATTGTACCAAA GCTGTAATGGTAAAGAAAAGAATTGATGAATGGAAGGAATAATTTATATAACTATAGAGT TTTCTTTTTTTAATGGATATATACTGTATTGTAGTGTTTAATCAAAATAAAACTATTTGA CCTTATGGAGGAAGGTCATGTTTTTACCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CTTCCACTTGAAGCTGCAACAGGCATCCCACCCGGAAGCATCCTTCTTAATCCACATACA GGCCAGCCCTTTGTGAATCCAGATGGAAGCCCCGCCATATACAACCCCCCTGCCAGCCAG CAGCCTCTGCGAAGCACGATGGTGGGGCAGTCCCAGCAGCAGCCCCGGCAGCAGCCCTCC CCACCGCAGCAGCAGGTCCAGCCACCTCAGCCGCAGATGGCAGGCCCACTGGTCACTCAG GGGCTGCAAGCTTCCTCCCAGTCAGTGCAATATCCAGCTGTCCCTTTCCCTACCCAGCAT CTCCTGCCAGTGTCTCCGACGCCGCAGTTCCCCATGAGAGAGGATGTGGCCACACAGTTC GGCCAGATGAACCTGAGCCGGCAGTCCTCAGGGGAGACTGCTGAGCCCCCAGCTGGTCCC GTCTACCCGCCGTCCCTCCTGCCACAGCCCACCCAACAGCCAAGCTATGTCATCACCTCC ACAGGCCAGCAGCTCCCAACGGGGGGCTTCTCAGGCTCCGGACCTCCCATCTCCCAGCAA GTCCTCCAGCCCCCTCCCTCGCCACAGGGATTTGTGCAACAGCCTCCAGCTGCACAGATG CCTGTGTATTATTATCCATCTGGCCAGTACCCTACCTCAACTGCTCAGCAGTTCCGGCCT GTAGCCTCAATTCAGTTCAGTGCTCAGAGGGGCCAGCAGATGCCACAGACAGCACAGCAA GCAGGTTACCAGCCGGTCTTGTCTGGTCAACAGGGGTTCCAAAGCCTCATGGGGGTGCAG CAGCCACCTCAGAGTCAGGGTGTGATGAGCAGCCAACAGGGAACTCCAGTGCAAAGCGTC ATGGTCTCCTACCCAACCATGTCTAATTATCAGGTGCCGATGACCCAGGGTTCTCAAGGA CTCCCTCAGCAGTCATACCAACAGCCAATCATGCTACCTAACCAGGCAGGCCAAGGGTCC CTCCCAGCCACTGGAATGCCTGTGTACTGTAACGTCACACCGCCTACCCCTCAAAACAAC CTTAGGCTGATTGGCCCTCACTGCCCTTCCAGCACTGTCCCTGTGATGTCGGCCAGCTGT AGGACCAACTGTGCCAATATGAGCAATGCCGGGTGGCAGGTCAAGTTCTGAGCGCTCTGC CTGTGGTACATTTCTCCAGATATTACTCATGGCCTTTAAGGGAAGAGCAAGGTGGGAAGA TTCACTGAGGACTTAGGTATTCACTCAACACCCAAATGACTGCTGCTGGTATTCTGTAAA AAAACAAAGACTAATCCACACATTAGCTGGTTAATGGTGCATATTTGTCATGTCTGCTAG GTATGCCTTTATAGCTTAGCTAGTGACATGAATTCATCAAGGTAAGATTTTCTCCTACCA CTGAATACCACTGTGTAGATGATAATATCCCTAATTTGGATTATTAGTTTTGTACTTTGT GTTGAGTTTGTGATGCTAAAAGTATTTAAAAATTATATACTGAAATCACATTGTACCAAA GCTGTAATGGTAAAGAAAAGAATTGATGAATGGAAGGAATAATTTATATAACTATAGAGT TTTCTTTTTTTAATGGATATATACTGTATTGTAGTGTTTAATCAAAATAAAACTATTTGA CCTTATGGAGGAAGGTCATGTTTTTACCACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
489-600, - strand, RNAz p=0.962993 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
489-600, - strand, RNAz p=0.962993 |
Aligned organism(s): 33 entry(ies) | More info |
Aligned organism(s): 33 entry(ies) | Help | Less info |
59-241, gnl|bosTau2|chr22 (6865860-6866045) | |
59-241, gnl|canFam2|chr23 (8830509-8830651) | |
59-241, gnl|dasNov1|scaffold_69460 (4946-4804) | |
59-241, gnl|echTel1|scaffold_170567 (2640-2495) | |
59-241, gnl|galGal2|chr2 (44592829-44592959) | |
59-241, gnl|hg17|chr3 (35753664-35753809) | |
59-241, gnl|Hg17|chr3 (35753671-35753859) | |
59-241, gnl|loxAfr1|scaffold_9054 (39325-39183) | |
59-241, gnl|mm7|chr9 (111825793-111825651) | |
59-241, gnl|Mm7|chr9 (111825784-111825599) | |
59-241, gnl|monDom2|scaffold_170 (446930-446792) | |
59-241, gnl|oryCun1|scaffold_211680 (13986-13844) | |
59-241, gnl|panTro1|chr2 (36771588-36771733) | |
59-241, gnl|rheMac2|chr2 (178146693-178146838) | |
59-241, gnl|rn3|chr8 (116755264-116755122) | |
59-241, gnl|tetNig1|chr21 (1231438-1231322) | |
336-600, gnl|bosTau2|chr22 (6868190-6868439) | |
336-600, gnl|canFam2|chr23 (8832592-8832809) | |
336-600, gnl|dasNov1|scaffold_69460 (2791-2571) | |
336-600, gnl|echTel1|scaffold_170567 (226-4) | |
336-600, gnl|fr1|chrUn (206326525-206326760) | |
336-600, gnl|galGal2|chr2 (44597541-44597745) | |
336-600, gnl|hg17|chr3 (35755785-35756008) | |
336-600, gnl|Hg17|chr3 (35755812-35756076) | |
336-600, gnl|loxAfr1|scaffold_9054 (36911-36688) | |
336-600, gnl|mm7|chr9 (111823342-111823128) | |
336-600, gnl|Mm7|chr9 (111823322-111823058) | |
336-600, gnl|monDom2|scaffold_170 (445512-445311) | |
336-600, gnl|oryCun1|scaffold_211680 (11168-10945) | |
336-600, gnl|panTro1|chr2 (36773708-36773931) | |
336-600, gnl|rheMac2|chr2 (178148816-178149039) | |
336-600, gnl|rn3|chr8 (116752613-116752402) | |
336-600, gnl|tetNig1|chr11 (2790671-2790897) |
Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
59-241, gnl|bosTau2|chr22 (6865860-6866045) | |
59-241, gnl|canFam2|chr23 (8830509-8830651) | |
59-241, gnl|dasNov1|scaffold_69460 (4946-4804) | |
59-241, gnl|echTel1|scaffold_170567 (2640-2495) | |
59-241, gnl|galGal2|chr2 (44592829-44592959) | |
59-241, gnl|hg17|chr3 (35753664-35753809) | |
59-241, gnl|Hg17|chr3 (35753671-35753859) | |
59-241, gnl|loxAfr1|scaffold_9054 (39325-39183) | |
59-241, gnl|mm7|chr9 (111825793-111825651) | |
59-241, gnl|Mm7|chr9 (111825784-111825599) | |
59-241, gnl|monDom2|scaffold_170 (446930-446792) | |
59-241, gnl|oryCun1|scaffold_211680 (13986-13844) | |
59-241, gnl|panTro1|chr2 (36771588-36771733) | |
59-241, gnl|rheMac2|chr2 (178146693-178146838) | |
59-241, gnl|rn3|chr8 (116755264-116755122) | |
59-241, gnl|tetNig1|chr21 (1231438-1231322) | |
336-600, gnl|bosTau2|chr22 (6868190-6868439) | |
336-600, gnl|canFam2|chr23 (8832592-8832809) | |
336-600, gnl|dasNov1|scaffold_69460 (2791-2571) | |
336-600, gnl|echTel1|scaffold_170567 (226-4) | |
336-600, gnl|fr1|chrUn (206326525-206326760) | |
336-600, gnl|galGal2|chr2 (44597541-44597745) | |
336-600, gnl|hg17|chr3 (35755785-35756008) | |
336-600, gnl|Hg17|chr3 (35755812-35756076) | |
336-600, gnl|loxAfr1|scaffold_9054 (36911-36688) | |
336-600, gnl|mm7|chr9 (111823342-111823128) | |
336-600, gnl|Mm7|chr9 (111823322-111823058) | |
336-600, gnl|monDom2|scaffold_170 (445512-445311) | |
336-600, gnl|oryCun1|scaffold_211680 (11168-10945) | |
336-600, gnl|panTro1|chr2 (36773708-36773931) | |
336-600, gnl|rheMac2|chr2 (178148816-178149039) | |
336-600, gnl|rn3|chr8 (116752613-116752402) | |
336-600, gnl|tetNig1|chr11 (2790671-2790897) |
Expressed library(ies): 11 entry(ies) | More info |
Expressed library(ies): 11 entry(ies) | Help | Less info |
thg (1.01433) | |
fhi (0.508733) | |
fcc (0.197785) | |
fty (0.17584) | |
fbs (0.175346) | |
bfe (0.149858) | |
ssp (0.13552) | |
ste (0.135208) | |
ese (0.126502) | |
med (0.116252) | |
ecc (0.115035) |
Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
thg (1.01433) | |
fhi (0.508733) | |
fcc (0.197785) | |
fty (0.17584) | |
fbs (0.175346) | |
bfe (0.149858) | |
ssp (0.13552) | |
ste (0.135208) | |
ese (0.126502) | |
med (0.116252) | |
ecc (0.115035) |