Non-Coding RNA Search

Ss1.1-Pig4-TMW8032E04.3

Sequence:


               
               CTCGAGGGGGCAGCGGGCGCTGTGACTGCCAAGCTGGCTACGGGGGAGAGGCCTGTGGCC
AGTGTGGCCTCGGCTACTTTGAGGCAGAGCGCAACTCCAGCCATCTGGTATGTTCGGCTT
GTTTTGGCCCCTGTGCCCGCTGCTCAGGACCTGAGGAATCAAATTGTTTGCAGTGCAAGA
AGGGCTGGGCCCTGCATCACCTCAAGTGTGTAGACATTGATGAGTGTGGCACAGAGCGAG
CCAGCTGTGGAGCCGACCAGTTCTGCGTGAACACGGAGGGCTCCTATGAGTGCCGGGACT
GTGCCAAGGCCTGCCTGGGCTGCATGGGGGCAGGGCCCGGCCGCTGTAAGAAGTGTAGCC
CTGGCTACCAGCAGGTGGGCTCCAAGTGTCTCGACGTGGATGAATGTGAGACGGCGGTTT
GTCCAGGGGAGAACGAAAAATGTGAGAACACTGAGGGCAGTTACCGCTGCATCTGTGCCG
AGGGCTACAAACAGATTGAGGGCATCTGTGTGAAGGAGCAGATCCCAGAATCAGCGGGCT
TCTTCTCGGAGATGACAGAGGACGAGCTGGTGGTGCTGCAGCAGATGTTCTTCGGGGTCA
TCATCTGTGCGCTGGCCACGCTGGCTGCCAAGGGTGACTTGGTCTTCACCGCCATCTTCA
TTGGGGCTGTGGCCGCCATGACCGGCTACTGGTTGTCAGAGCGCAGTGACCGTGTACTGG
AGGGCTTCATCAAGGGCAGATAATCCTGGCCACACCTGCAGGGTCTCTTCCCCGCCCAGG
CTGCCCCTGAGGGCGGGCCTCCCTCCCGCCTGGACACTTGAGGGACTTGCTTTATTTTTG
AGAGTGGGGTAAGCATCCCCTGCCCACCTTATGGAGCAGCCCAGGCACCCAGGTCTGGGC
AGGTGAGGCCCCTGGGGTGAAAGGATAGCCTTTAAGGGTGGGTACCATGAGACCTTGGCC
CCAGGGGACTGGGCAGGCTTCACAATGTGTGTGAATTTTTTGAAGTGTCTCCTTGTGGTG
GCTGCTAGTGAGCTTTGGCCCCTACCCAGGATGTGTGTGGGGAGGGGTCCCTGCAGGGGT
GGGCCCTTCACAGCCCCCTCCTGCCAGCTGCATGCTGCCAGCTCCTGTTCCGTATTCACC
CCCTGCCTCCCAGCCACTGATTTATTTATTCATCTCAGGAAATAAAGGACGATCTTGGAA
AATAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAGGGGGCAGCGGGCGCTGTGACTGCCAAGCTGGCTACGGGGGAGAGGCCTGTGGCC
AGTGTGGCCTCGGCTACTTTGAGGCAGAGCGCAACTCCAGCCATCTGGTATGTTCGGCTT
GTTTTGGCCCCTGTGCCCGCTGCTCAGGACCTGAGGAATCAAATTGTTTGCAGTGCAAGA
AGGGCTGGGCCCTGCATCACCTCAAGTGTGTAGACATTGATGAGTGTGGCACAGAGCGAG
CCAGCTGTGGAGCCGACCAGTTCTGCGTGAACACGGAGGGCTCCTATGAGTGCCGGGACT
GTGCCAAGGCCTGCCTGGGCTGCATGGGGGCAGGGCCCGGCCGCTGTAAGAAGTGTAGCC
CTGGCTACCAGCAGGTGGGCTCCAAGTGTCTCGACGTGGATGAATGTGAGACGGCGGTTT
GTCCAGGGGAGAACGAAAAATGTGAGAACACTGAGGGCAGTTACCGCTGCATCTGTGCCG
AGGGCTACAAACAGATTGAGGGCATCTGTGTGAAGGAGCAGATCCCAGAATCAGCGGGCT
TCTTCTCGGAGATGACAGAGGACGAGCTGGTGGTGCTGCAGCAGATGTTCTTCGGGGTCA
TCATCTGTGCGCTGGCCACGCTGGCTGCCAAGGGTGACTTGGTCTTCACCGCCATCTTCA
TTGGGGCTGTGGCCGCCATGACCGGCTACTGGTTGTCAGAGCGCAGTGACCGTGTACTGG
AGGGCTTCATCAAGGGCAGATAATCCTGGCCACACCTGCAGGGTCTCTTCCCCGCCCAGG
CTGCCCCTGAGGGCGGGCCTCCCTCCCGCCTGGACACTTGAGGGACTTGCTTTATTTTTG
AGAGTGGGGTAAGCATCCCCTGCCCACCTTATGGAGCAGCCCAGGCACCCAGGTCTGGGC
AGGTGAGGCCCCTGGGGTGAAAGGATAGCCTTTAAGGGTGGGTACCATGAGACCTTGGCC
CCAGGGGACTGGGCAGGCTTCACAATGTGTGTGAATTTTTTGAAGTGTCTCCTTGTGGTG
GCTGCTAGTGAGCTTTGGCCCCTACCCAGGATGTGTGTGGGGAGGGGTCCCTGCAGGGGT
GGGCCCTTCACAGCCCCCTCCTGCCAGCTGCATGCTGCCAGCTCCTGTTCCGTATTCACC
CCCTGCCTCCCAGCCACTGATTTATTTATTCATCTCAGGAAATAAAGGACGATCTTGGAA
AATAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26341208|dbj|BAC34266.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26341208|dbj|BAC34266.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               758-1109, + strand, RNAz p=0.997434

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               758-1109, + strand, RNAz p=0.997434

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015513, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015513, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-117, gnl|bosTau2|chr22 (12038663-12038779)
               

               
               1-117, gnl|canFam2|chr20 (11340014-11339862)
               

               
               1-117, gnl|danRer3|chrNA (124326651-124326496)
               

               
               1-117, gnl|echTel1|scaffold_325473 (111490-111642)
               

               
               1-117, gnl|fr1|chrUn (73063919-73064074)
               

               
               1-117, gnl|hg17|chr3 (9957561-9957713)
               

               
               1-117, gnl|Hg17|chr3 (9957594-9957710)
               

               
               1-117, gnl|loxAfr1|scaffold_46977 (16677-16525)
               

               
               1-117, gnl|mm7|chr6 (113650390-113650542)
               

               
               1-117, gnl|Mm7|chr6 (113650423-113650539)
               

               
               1-117, gnl|monDom2|scaffold_5 (36708518-36708670)
               

               
               1-117, gnl|oryCun1|scaffold_158277 (5385-5233)
               

               
               1-117, gnl|panTro1|chr2 (10332949-10333101)
               

               
               1-117, gnl|rheMac2|chr2 (51029718-51029566)
               

               
               1-117, gnl|rn3|chr4 (149626311-149626463)
               

               
               1-117, gnl|tetNig1|chr9 (6706759-6706634)
               

               
               1-117, gnl|xenTro1|scaffold_395 (1092055-1091903)
               


               
               526-1203, gnl|bosTau2|chr22 (12041271-12041932)
               

               
               526-1203, gnl|Hg17|chr3 (9961040-9961711)
               

               
               526-1203, gnl|Mm7|chr6 (113653613-113654266)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-117, gnl|bosTau2|chr22 (12038663-12038779)
               

               
               1-117, gnl|canFam2|chr20 (11340014-11339862)
               

               
               1-117, gnl|danRer3|chrNA (124326651-124326496)
               

               
               1-117, gnl|echTel1|scaffold_325473 (111490-111642)
               

               
               1-117, gnl|fr1|chrUn (73063919-73064074)
               

               
               1-117, gnl|hg17|chr3 (9957561-9957713)
               

               
               1-117, gnl|Hg17|chr3 (9957594-9957710)
               

               
               1-117, gnl|loxAfr1|scaffold_46977 (16677-16525)
               

               
               1-117, gnl|mm7|chr6 (113650390-113650542)
               

               
               1-117, gnl|Mm7|chr6 (113650423-113650539)
               

               
               1-117, gnl|monDom2|scaffold_5 (36708518-36708670)
               

               
               1-117, gnl|oryCun1|scaffold_158277 (5385-5233)
               

               
               1-117, gnl|panTro1|chr2 (10332949-10333101)
               

               
               1-117, gnl|rheMac2|chr2 (51029718-51029566)
               

               
               1-117, gnl|rn3|chr4 (149626311-149626463)
               

               
               1-117, gnl|tetNig1|chr9 (6706759-6706634)
               

               
               1-117, gnl|xenTro1|scaffold_395 (1092055-1091903)
               


               
               526-1203, gnl|bosTau2|chr22 (12041271-12041932)
               

               
               526-1203, gnl|Hg17|chr3 (9961040-9961711)
               

               
               526-1203, gnl|Mm7|chr6 (113653613-113654266)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               ecc (0.345105)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	1-117, gnl\|bosTau2\|chr22 (12038663-12038779)
	1-117, gnl\|canFam2\|chr20 (11340014-11339862)
	1-117, gnl\|danRer3\|chrNA (124326651-124326496)
	1-117, gnl\|echTel1\|scaffold_325473 (111490-111642)
	1-117, gnl\|fr1\|chrUn (73063919-73064074)
	1-117, gnl\|hg17\|chr3 (9957561-9957713)
	1-117, gnl\|Hg17\|chr3 (9957594-9957710)
	1-117, gnl\|loxAfr1\|scaffold_46977 (16677-16525)
	1-117, gnl\|mm7\|chr6 (113650390-113650542)
	1-117, gnl\|Mm7\|chr6 (113650423-113650539)
	1-117, gnl\|monDom2\|scaffold_5 (36708518-36708670)
	1-117, gnl\|oryCun1\|scaffold_158277 (5385-5233)
	1-117, gnl\|panTro1\|chr2 (10332949-10333101)
	1-117, gnl\|rheMac2\|chr2 (51029718-51029566)
	1-117, gnl\|rn3\|chr4 (149626311-149626463)
	1-117, gnl\|tetNig1\|chr9 (6706759-6706634)
	1-117, gnl\|xenTro1\|scaffold_395 (1092055-1091903)

	526-1203, gnl\|bosTau2\|chr22 (12041271-12041932)
	526-1203, gnl\|Hg17\|chr3 (9961040-9961711)
	526-1203, gnl\|Mm7\|chr6 (113653613-113654266)

	ecc (0.345105)
	fbs (0.175346)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	cag (0.151194)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)