Ss1.1-Pig4-TMW8032E16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGACTCGGAGGCTTCCGCGGCTTCTGCGGCAGCGACGGGAAGTGAGGCGGCCGGGCCGGG CGGCCTCGGCGGCAGAAACAGAGGCGGAAGAGTCGCTGCGGCGACGACGTCGTCGACCCG GGTGACCGAGAGTGCTGAGCGCCGAGGGGACTCGCCCGCTCGGAAGCCGGATCCCGAGCC GGGCAGGATGGATCATCACCAGCCTGGGACTGGTCGCTACCAGGTGCTTCACAATGAAGA GGATAATTCAGAATCATCTGCAGTAGAGCAGCCATCAACTTCAGACCCAGTACCACAGAC CATGCAGGCTGCTTCTTCAGCATCAGGACTTGAGGCTGACTCTTCTCCTCCACCTTATAG TAGTATTACCGTGGAAGTACCTACAACTTCAGATACAGAAGTTTACAGTGACTTTTATCC TGTGCCACCTCCCTACAGTGTTGCTACCTCCCTTCCTACGTATGATGAAGCTGAGAAGGC CAAAGCTGCTGCCATAGCAGCCGCAGCAGCAGAAACATCTCAAAGAATTCAGGAGGAAGA ATGTCCACCAAGAGATGACTTCAGTGATGCAGACCAGCTCAGAGTGGGTAATGATGGGAT TTTCATGCTGGCATTTTTCATGGCATTTATTTTCAACTGGCTTGGATTTTGTTTATCTTT CTGTATCACCAATACCATAGCTGGAAGGTATGGTGCCATCTGTGGATTTGGCCTTTCATT GATCAAGTGGATTCTTATTGTCAGGTTTTCTGATTATTTTACTGGATATTTCAATGGACA ATATTGGCTTTGGTGGATATTTCTTGTACTTGGCCTGCTTCTTTTCTTCAGAGGATTTGT TAATTACCTGAAAGTCAGAAACATGTCTGAAAGTATGGCAGCTGCTCATAGAACAAGATA TTTCTTCTTATTATAGAGACTGCATCGACCAGACATTCCTTTCTTATACCAATGTGAAAT TTCCAGATCATCTGTAAATCTGCAACTTTAATAGGATAGAAGACTACTAAAAACGGAAGA CAAATTAGTGAAGAAAAGATAGAGCTTCAAAATTGAATGGCAGAGTGGTTTATGCTTAAA AGCCATTTCTGTTCATTCTCTTAATATTTCATTTGCTTTGCGCATTTGCATATGTGCCCA TTTAAAAGATTTGCATATTCTTGAAAGAAACCAGAAACCGTAAAGTTGTAGCAGTAAAGT TTCGTCATATTTGATTAGTGTTTGATATAATTGAAAGAGTTGAGTGATAAACAGTCTTCC AGCATGTAAATGTCATTGACTTCTGACCTGACATTTAGTATAATAAAAATGAAATGATTA ACCATGTCAAATGCTTTAGTTTCTGGCTCTTAGATTTATCTAGTAACTCTGCACATCCTT TGTTATATATAAAATTTTTTGAAACTTGCAGTGCTGATTATTAGAAAGGCTTTGTCAGAT TTTTGAACATGATATTTACATCATTATTTAGCAAAACGTTATGTAAATAACCATGCATAA ATTACTTTCTGCATTGTTTTCTTAGAAATTGTGTCTAGATATCTTTTCATTAATTTTAAA TTAAGTGGACTTAATATATATAGAAAATTTTGCCGTCAAAGATAGTTTGTTTTAGGACAA ATTTTAAGAAAAATGTGGGTATTCCTCATGTCCTTTGTAAGAAAATCCTTTTTTTTTTTA AAGGGACATGCCAGTTTTAGGAATTCTCAAATGAGAAGCTTGGTTTTCAGCCATTGTCCA TCCTAGATATTCTTGCAGGCAGAATTGTATTAGATATTATATTTATTTCATTTAAGACTT TTTGAAAATTAATTTTCTGAATAAGATATTCTCATTTGCATTTTGTCTTTTAAAAGGCCA ATAAAAGTATCTTTCAATATCATTGCAATATTTTTCTTCTTTAGATGTTTAACTTAGGAA AGAAAAACTTGTGCTTTTAAAAGCTTCTTGCTTTATGATTGTAGGCTTAAATTGTAAAAA TCATTTCCTGAATTGAGATATACAAAATATCTGTTTTCAAGTTATGCAAATGTGTCTGTG GAATATAGGGGTTGTGAGTGTGGTTTGTGAGAGTGTGAGTATGTATTGTTACTGCTGGAA TCTGTTTTACATTCATAAGCTACTACATTTTGCAAATCATTTTATGTCTCATCTGTTTTC TTTTCAGTTATATCTTTGCTTTTGAATGCCAGCATTAAAAATGATGGGAATTATATCATC TTTTAAACTTAAAAATCATTTAATACAGCTATATAGAACTCATAAAACTGATTGCTTGTT TATTATTAGACACCGACTACTAAAAGGTACATCTAAAACGATTCAGGATCACTTGTTCCA TTTCTGAACACAAAATTTATTACGCTTTATAACTTCTTTTGTATTTCTCTGTATTTTCTT ATTTACTTCATTGTCTTTGATAAATAAAACATGCAGTTTTGTTTTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGACTCGGAGGCTTCCGCGGCTTCTGCGGCAGCGACGGGAAGTGAGGCGGCCGGGCCGGG CGGCCTCGGCGGCAGAAACAGAGGCGGAAGAGTCGCTGCGGCGACGACGTCGTCGACCCG GGTGACCGAGAGTGCTGAGCGCCGAGGGGACTCGCCCGCTCGGAAGCCGGATCCCGAGCC GGGCAGGATGGATCATCACCAGCCTGGGACTGGTCGCTACCAGGTGCTTCACAATGAAGA GGATAATTCAGAATCATCTGCAGTAGAGCAGCCATCAACTTCAGACCCAGTACCACAGAC CATGCAGGCTGCTTCTTCAGCATCAGGACTTGAGGCTGACTCTTCTCCTCCACCTTATAG TAGTATTACCGTGGAAGTACCTACAACTTCAGATACAGAAGTTTACAGTGACTTTTATCC TGTGCCACCTCCCTACAGTGTTGCTACCTCCCTTCCTACGTATGATGAAGCTGAGAAGGC CAAAGCTGCTGCCATAGCAGCCGCAGCAGCAGAAACATCTCAAAGAATTCAGGAGGAAGA ATGTCCACCAAGAGATGACTTCAGTGATGCAGACCAGCTCAGAGTGGGTAATGATGGGAT TTTCATGCTGGCATTTTTCATGGCATTTATTTTCAACTGGCTTGGATTTTGTTTATCTTT CTGTATCACCAATACCATAGCTGGAAGGTATGGTGCCATCTGTGGATTTGGCCTTTCATT GATCAAGTGGATTCTTATTGTCAGGTTTTCTGATTATTTTACTGGATATTTCAATGGACA ATATTGGCTTTGGTGGATATTTCTTGTACTTGGCCTGCTTCTTTTCTTCAGAGGATTTGT TAATTACCTGAAAGTCAGAAACATGTCTGAAAGTATGGCAGCTGCTCATAGAACAAGATA TTTCTTCTTATTATAGAGACTGCATCGACCAGACATTCCTTTCTTATACCAATGTGAAAT TTCCAGATCATCTGTAAATCTGCAACTTTAATAGGATAGAAGACTACTAAAAACGGAAGA CAAATTAGTGAAGAAAAGATAGAGCTTCAAAATTGAATGGCAGAGTGGTTTATGCTTAAA AGCCATTTCTGTTCATTCTCTTAATATTTCATTTGCTTTGCGCATTTGCATATGTGCCCA TTTAAAAGATTTGCATATTCTTGAAAGAAACCAGAAACCGTAAAGTTGTAGCAGTAAAGT TTCGTCATATTTGATTAGTGTTTGATATAATTGAAAGAGTTGAGTGATAAACAGTCTTCC AGCATGTAAATGTCATTGACTTCTGACCTGACATTTAGTATAATAAAAATGAAATGATTA ACCATGTCAAATGCTTTAGTTTCTGGCTCTTAGATTTATCTAGTAACTCTGCACATCCTT TGTTATATATAAAATTTTTTGAAACTTGCAGTGCTGATTATTAGAAAGGCTTTGTCAGAT TTTTGAACATGATATTTACATCATTATTTAGCAAAACGTTATGTAAATAACCATGCATAA ATTACTTTCTGCATTGTTTTCTTAGAAATTGTGTCTAGATATCTTTTCATTAATTTTAAA TTAAGTGGACTTAATATATATAGAAAATTTTGCCGTCAAAGATAGTTTGTTTTAGGACAA ATTTTAAGAAAAATGTGGGTATTCCTCATGTCCTTTGTAAGAAAATCCTTTTTTTTTTTA AAGGGACATGCCAGTTTTAGGAATTCTCAAATGAGAAGCTTGGTTTTCAGCCATTGTCCA TCCTAGATATTCTTGCAGGCAGAATTGTATTAGATATTATATTTATTTCATTTAAGACTT TTTGAAAATTAATTTTCTGAATAAGATATTCTCATTTGCATTTTGTCTTTTAAAAGGCCA ATAAAAGTATCTTTCAATATCATTGCAATATTTTTCTTCTTTAGATGTTTAACTTAGGAA AGAAAAACTTGTGCTTTTAAAAGCTTCTTGCTTTATGATTGTAGGCTTAAATTGTAAAAA TCATTTCCTGAATTGAGATATACAAAATATCTGTTTTCAAGTTATGCAAATGTGTCTGTG GAATATAGGGGTTGTGAGTGTGGTTTGTGAGAGTGTGAGTATGTATTGTTACTGCTGGAA TCTGTTTTACATTCATAAGCTACTACATTTTGCAAATCATTTTATGTCTCATCTGTTTTC TTTTCAGTTATATCTTTGCTTTTGAATGCCAGCATTAAAAATGATGGGAATTATATCATC TTTTAAACTTAAAAATCATTTAATACAGCTATATAGAACTCATAAAACTGATTGCTTGTT TATTATTAGACACCGACTACTAAAAGGTACATCTAAAACGATTCAGGATCACTTGTTCCA TTTCTGAACACAAAATTTATTACGCTTTATAACTTCTTTTGTATTTCTCTGTATTTTCTT ATTTACTTCATTGTCTTTGATAAATAAAACATGCAGTTTTGTTTTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-150, + strand, RNAz p=0.812517 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-150, + strand, RNAz p=0.812517 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC026126, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-226, gnl|bosTau2|chr12 (31013434-31013209) | |
| 1-226, gnl|Hg17|chr13 (78953435-78953660) | |
| 1-226, gnl|Mm7|chr14 (99688429-99688663) | |
| 387-526, gnl|bosTau2|chr12 (30973375-30973236) | |
| 387-526, gnl|canFam2|chr22 (35710319-35710463) | |
| 387-526, gnl|danRer3|chr14 (23033067-23033162) | |
| 387-526, gnl|dasNov1|scaffold_43059 (4341-4197) | |
| 387-526, gnl|fr1|chrUn (29023993-29023896) | |
| 387-526, gnl|hg17|chr13 (79005454-79005598) | |
| 387-526, gnl|Hg17|chr13 (79005453-79005592) | |
| 387-526, gnl|mm7|chr14 (99721888-99722032) | |
| 387-526, gnl|Mm7|chr14 (99721887-99722026) | |
| 387-526, gnl|monDom2|scaffold_8 (17798585-17798729) | |
| 387-526, gnl|oryCun1|scaffold_190066 (24893-25033) | |
| 387-526, gnl|panTro1|chr14 (61664033-61664177) | |
| 387-526, gnl|rheMac2|chr17 (60037659-60037803) | |
| 387-526, gnl|rn3|chr15 (89377339-89377483) | |
| 387-526, gnl|tetNig1|chr3 (4444690-4444801) | |
| 387-526, gnl|xenTro1|scaffold_141 (952537-952399) | |
| 616-745, gnl|bosTau2|chr12 (30955093-30954963) | |
| 616-745, gnl|canFam2|chr22 (35727166-35727324) | |
| 616-745, gnl|danRer3|chr1 (794128-794280) | |
| 616-745, gnl|dasNov1|scaffold_25154 (7056-7179) | |
| 616-745, gnl|echTel1|scaffold_268440 (825-667) | |
| 616-745, gnl|fr1|chrUn (29023521-29023376) | |
| 616-745, gnl|galGal2|chr1 (149779810-149779663) | |
| 616-745, gnl|hg17|chr13 (79015686-79015844) | |
| 616-745, gnl|Hg17|chr13 (79015688-79015818) | |
| 616-745, gnl|loxAfr1|scaffold_5330 (82198-82356) | |
| 616-745, gnl|mm7|chr14 (99727656-99727803) | |
| 616-745, gnl|Mm7|chr14 (99727658-99727788) | |
| 616-745, gnl|monDom2|scaffold_8 (17850954-17851098) | |
| 616-745, gnl|oryCun1|scaffold_195834 (167370-167510) | |
| 616-745, gnl|panTro1|chr14 (61674240-61674398) | |
| 616-745, gnl|rheMac2|chr17 (60047906-60048064) | |
| 616-745, gnl|rn3|chr15 (89382603-89382755) | |
| 616-745, gnl|tetNig1|chr3 (4445061-4445207) | |
| 616-745, gnl|xenTro1|scaffold_141 (945896-945745) | |
| 917-2448, gnl|bosTau2|chr12 (30945556-30944040) | |
| 917-2448, gnl|Hg17|chr13 (79024650-79026222) | |
| 917-2448, gnl|Mm7|chr14 (99737545-99739002) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-226, gnl|bosTau2|chr12 (31013434-31013209) | |
| 1-226, gnl|Hg17|chr13 (78953435-78953660) | |
| 1-226, gnl|Mm7|chr14 (99688429-99688663) | |
| 387-526, gnl|bosTau2|chr12 (30973375-30973236) | |
| 387-526, gnl|canFam2|chr22 (35710319-35710463) | |
| 387-526, gnl|danRer3|chr14 (23033067-23033162) | |
| 387-526, gnl|dasNov1|scaffold_43059 (4341-4197) | |
| 387-526, gnl|fr1|chrUn (29023993-29023896) | |
| 387-526, gnl|hg17|chr13 (79005454-79005598) | |
| 387-526, gnl|Hg17|chr13 (79005453-79005592) | |
| 387-526, gnl|mm7|chr14 (99721888-99722032) | |
| 387-526, gnl|Mm7|chr14 (99721887-99722026) | |
| 387-526, gnl|monDom2|scaffold_8 (17798585-17798729) | |
| 387-526, gnl|oryCun1|scaffold_190066 (24893-25033) | |
| 387-526, gnl|panTro1|chr14 (61664033-61664177) | |
| 387-526, gnl|rheMac2|chr17 (60037659-60037803) | |
| 387-526, gnl|rn3|chr15 (89377339-89377483) | |
| 387-526, gnl|tetNig1|chr3 (4444690-4444801) | |
| 387-526, gnl|xenTro1|scaffold_141 (952537-952399) | |
| 616-745, gnl|bosTau2|chr12 (30955093-30954963) | |
| 616-745, gnl|canFam2|chr22 (35727166-35727324) | |
| 616-745, gnl|danRer3|chr1 (794128-794280) | |
| 616-745, gnl|dasNov1|scaffold_25154 (7056-7179) | |
| 616-745, gnl|echTel1|scaffold_268440 (825-667) | |
| 616-745, gnl|fr1|chrUn (29023521-29023376) | |
| 616-745, gnl|galGal2|chr1 (149779810-149779663) | |
| 616-745, gnl|hg17|chr13 (79015686-79015844) | |
| 616-745, gnl|Hg17|chr13 (79015688-79015818) | |
| 616-745, gnl|loxAfr1|scaffold_5330 (82198-82356) | |
| 616-745, gnl|mm7|chr14 (99727656-99727803) | |
| 616-745, gnl|Mm7|chr14 (99727658-99727788) | |
| 616-745, gnl|monDom2|scaffold_8 (17850954-17851098) | |
| 616-745, gnl|oryCun1|scaffold_195834 (167370-167510) | |
| 616-745, gnl|panTro1|chr14 (61674240-61674398) | |
| 616-745, gnl|rheMac2|chr17 (60047906-60048064) | |
| 616-745, gnl|rn3|chr15 (89382603-89382755) | |
| 616-745, gnl|tetNig1|chr3 (4445061-4445207) | |
| 616-745, gnl|xenTro1|scaffold_141 (945896-945745) | |
| 917-2448, gnl|bosTau2|chr12 (30945556-30944040) | |
| 917-2448, gnl|Hg17|chr13 (79024650-79026222) | |
| 917-2448, gnl|Mm7|chr14 (99737545-99739002) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| ret (1.41607) | |
| fco (1.25766) | |
| kid (0.778412) | |
| tra (0.738552) | |
| mgp (0.692042) | |
| liv (0.585137) | |
| sin (0.524843) | |
| bfe (0.449573) | |
| sag (0.36543) | |
| fce (0.271592) | |
| pla (0.267344) | |
| clu (0.239292) | |
| jca (0.22792) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| ste (0.135208) | |
| sug (0.127291) | |
| pgl (0.118483) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (1.41607) | |
| fco (1.25766) | |
| kid (0.778412) | |
| tra (0.738552) | |
| mgp (0.692042) | |
| liv (0.585137) | |
| sin (0.524843) | |
| bfe (0.449573) | |
| sag (0.36543) | |
| fce (0.271592) | |
| pla (0.267344) | |
| clu (0.239292) | |
| jca (0.22792) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lun (0.150489) | |
| ski (0.146735) | |
| ste (0.135208) | |
| sug (0.127291) | |
| pgl (0.118483) |