Ss1.1-Pig4-TMW8032F08.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGAAATTCGAAAATACAGTGCAATATATGGCAGATTTGACTCAAAGAGAAAGGATGGGAA ACATCTCACACTTCATGAGCTCACTGTTAACGAAGCGGCAGCTCAGCTCTGTGTGAAGGA TAATGCCCTGCTGACAAGAAGGGATGAACTTTTTGCCCTAGCTAGGCAGATTTCTCGAGA AGTCACCTATAAGTATACTTACAGAACCACCAAGTCAAAATGTGGAGAAAGAGACGAATT ATCACCAAAGAGAATTAAAGTGGAGGATGGATTTCCAGATTTCCAGGACTCTGTGCAAAC ACTCTTTCAGCAGGCTAAAGCTAAGAGTGAAGAACTCGCCGCTCTTGGTTCACAGCCTGA AAAGGTGATGGCAAAGCAGATGGAGTTCCTTTGCACCCAAGCTGGCTATGACAGACTGCA GCATGCTGAAAGAAGACTGTCTGCAGGACTTTACAGGCAGAGCTCAGAAGAGCACAGCCC TAATGGCTTGACTTCTGATAACTCTGATGGACAAGGAGAAAGACCTTTGAATCTCCGAAT GCCTAATTTACAAAACAGACAACCCCATCATTTTGTAGTGGATGGGGAGCTGAGTAGACA TTACTCCAGTGAGGCAAAGTCCCACTCATCAGAGAGCCTTGGGATTTTAAAAGACTACCC TCACTCAGCTTTTACTTTAGAAAAGAAAGTCATCAAAACAGAACCTGAAGATTCAAGATA GCTGTAATTTTCCCATTGTTCTCTGGAAATGGCATCAGATTTAAGGATAATACTCCATCA TAGAAATAAGCCTTAATAACCAATGTTGCCTCATTCAGCACAAACAGATTTCATAGCCAA AGCATAAGGACTGATGTAGTAGTCTGTGGAAACCAGGAAGACAAAACTACAGCCACAAAG GAGAAAATTGAGAGAATGTTGCAATTTGTAACAGAAATATTGATTCATTCACATTCCTGT ATAAGTTGTTTTAAGTGGAAAGGCTTACAAAATATTATTGTAAGCACTCATTATTTAAGA GTGTACAATGCATCTGTGTAATTTATAGAAGTAAAATCTAGATGTTGA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGAAATTCGAAAATACAGTGCAATATATGGCAGATTTGACTCAAAGAGAAAGGATGGGAA ACATCTCACACTTCATGAGCTCACTGTTAACGAAGCGGCAGCTCAGCTCTGTGTGAAGGA TAATGCCCTGCTGACAAGAAGGGATGAACTTTTTGCCCTAGCTAGGCAGATTTCTCGAGA AGTCACCTATAAGTATACTTACAGAACCACCAAGTCAAAATGTGGAGAAAGAGACGAATT ATCACCAAAGAGAATTAAAGTGGAGGATGGATTTCCAGATTTCCAGGACTCTGTGCAAAC ACTCTTTCAGCAGGCTAAAGCTAAGAGTGAAGAACTCGCCGCTCTTGGTTCACAGCCTGA AAAGGTGATGGCAAAGCAGATGGAGTTCCTTTGCACCCAAGCTGGCTATGACAGACTGCA GCATGCTGAAAGAAGACTGTCTGCAGGACTTTACAGGCAGAGCTCAGAAGAGCACAGCCC TAATGGCTTGACTTCTGATAACTCTGATGGACAAGGAGAAAGACCTTTGAATCTCCGAAT GCCTAATTTACAAAACAGACAACCCCATCATTTTGTAGTGGATGGGGAGCTGAGTAGACA TTACTCCAGTGAGGCAAAGTCCCACTCATCAGAGAGCCTTGGGATTTTAAAAGACTACCC TCACTCAGCTTTTACTTTAGAAAAGAAAGTCATCAAAACAGAACCTGAAGATTCAAGATA GCTGTAATTTTCCCATTGTTCTCTGGAAATGGCATCAGATTTAAGGATAATACTCCATCA TAGAAATAAGCCTTAATAACCAATGTTGCCTCATTCAGCACAAACAGATTTCATAGCCAA AGCATAAGGACTGATGTAGTAGTCTGTGGAAACCAGGAAGACAAAACTACAGCCACAAAG GAGAAAATTGAGAGAATGTTGCAATTTGTAACAGAAATATTGATTCATTCACATTCCTGT ATAAGTTGTTTTAAGTGGAAAGGCTTACAAAATATTATTGTAAGCACTCATTATTTAAGA GTGTACAATGCATCTGTGTAATTTATAGAAGTAAAATCTAGATGTTGA |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 49 entry(ies) | More info |
Aligned organism(s): 49 entry(ies) | Help | Less info |
78-215, gnl|bosTau2|chr2 (2762495-2762632) | |
78-215, gnl|canFam2|chr37 (4221151-4221300) | |
78-215, gnl|danRer3|chr22 (10872370-10872226) | |
78-215, gnl|echTel1|scaffold_91542 (516-665) | |
78-215, gnl|fr1|chrUn (18242721-18242874) | |
78-215, gnl|galGal2|chr7 (29918-29769) | |
78-215, gnl|hg17|chr2 (191360552-191360701) | |
78-215, gnl|Hg17|chr2 (191360556-191360693) | |
78-215, gnl|loxAfr1|scaffold_17073 (38621-38770) | |
78-215, gnl|mm7|chr1 (52715422-52715277) | |
78-215, gnl|Mm7|chr1 (52715416-52715279) | |
78-215, gnl|monDom2|scaffold_2 (96408997-96409146) | |
78-215, gnl|oryCun1|scaffold_199012 (4018-3869) | |
78-215, gnl|panTro1|chr13 (81230334-81230483) | |
78-215, gnl|rheMac2|chr12 (54381744-54381893) | |
78-215, gnl|rn3|chr9 (46104842-46104987) | |
78-215, gnl|tetNig1|chr3 (892663-892808) | |
78-215, gnl|xenTro1|scaffold_941 (378324-378470) | |
353-516, gnl|bosTau2|chr2 (2776306-2776469) | |
353-516, gnl|canFam2|chr37 (4236588-4237004) | |
353-516, gnl|canFam2|chr37 (4236963-4236821) | |
353-516, gnl|dasNov1|scaffold_19888 (39411-39829) | |
353-516, gnl|dasNov1|scaffold_19888 (39784-39642) | |
353-516, gnl|echTel1|scaffold_285785 (39880-40293) | |
353-516, gnl|echTel1|scaffold_285785 (40248-40109) | |
353-516, gnl|galGal2|chr7 (21341-20924) | |
353-516, gnl|galGal2|chr7 (20928-21052) | |
353-516, gnl|hg17|chr2 (191375498-191375910) | |
353-516, gnl|Hg17|chr2 (191375708-191375871) | |
353-516, gnl|hg17|chrX (150065475-150065617) | |
353-516, gnl|loxAfr1|scaffold_18878 (59602-59214) | |
353-516, gnl|loxAfr1|scaffold_96079 (432-550) | |
353-516, gnl|mm7|chr1 (52698734-52698351) | |
353-516, gnl|Mm7|chr1 (52698537-52698374) | |
353-516, gnl|mm7|chr2 (20031332-20031474) | |
353-516, gnl|monDom2|scaffold_2 (96433449-96433861) | |
353-516, gnl|monDom2|scaffold_2 (96433821-96433679) | |
353-516, gnl|oryCun1|scaffold_215405 (229482-229107) | |
353-516, gnl|oryCun1|scaffold_215405 (229131-229271) | |
353-516, gnl|panTro1|chr13 (81245282-81245694) | |
353-516, gnl|panTro1|chrX (155341155-155341297) | |
353-516, gnl|rheMac2|chr12 (54396625-54397037) | |
353-516, gnl|rheMac2|chrX (149282332-149282474) | |
353-516, gnl|rn3|chr9 (46116848-46117224) | |
353-516, gnl|rn3|chr9 (46117189-46117049) | |
353-516, gnl|xenTro1|scaffold_941 (414038-414421) | |
630-1068, gnl|bosTau2|chr2 (2780529-2780963) | |
630-1068, gnl|Hg17|chr2 (191380474-191380912) | |
630-1068, gnl|Mm7|chr1 (52692899-52692483) |
Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
78-215, gnl|bosTau2|chr2 (2762495-2762632) | |
78-215, gnl|canFam2|chr37 (4221151-4221300) | |
78-215, gnl|danRer3|chr22 (10872370-10872226) | |
78-215, gnl|echTel1|scaffold_91542 (516-665) | |
78-215, gnl|fr1|chrUn (18242721-18242874) | |
78-215, gnl|galGal2|chr7 (29918-29769) | |
78-215, gnl|hg17|chr2 (191360552-191360701) | |
78-215, gnl|Hg17|chr2 (191360556-191360693) | |
78-215, gnl|loxAfr1|scaffold_17073 (38621-38770) | |
78-215, gnl|mm7|chr1 (52715422-52715277) | |
78-215, gnl|Mm7|chr1 (52715416-52715279) | |
78-215, gnl|monDom2|scaffold_2 (96408997-96409146) | |
78-215, gnl|oryCun1|scaffold_199012 (4018-3869) | |
78-215, gnl|panTro1|chr13 (81230334-81230483) | |
78-215, gnl|rheMac2|chr12 (54381744-54381893) | |
78-215, gnl|rn3|chr9 (46104842-46104987) | |
78-215, gnl|tetNig1|chr3 (892663-892808) | |
78-215, gnl|xenTro1|scaffold_941 (378324-378470) | |
353-516, gnl|bosTau2|chr2 (2776306-2776469) | |
353-516, gnl|canFam2|chr37 (4236588-4237004) | |
353-516, gnl|canFam2|chr37 (4236963-4236821) | |
353-516, gnl|dasNov1|scaffold_19888 (39411-39829) | |
353-516, gnl|dasNov1|scaffold_19888 (39784-39642) | |
353-516, gnl|echTel1|scaffold_285785 (39880-40293) | |
353-516, gnl|echTel1|scaffold_285785 (40248-40109) | |
353-516, gnl|galGal2|chr7 (21341-20924) | |
353-516, gnl|galGal2|chr7 (20928-21052) | |
353-516, gnl|hg17|chr2 (191375498-191375910) | |
353-516, gnl|Hg17|chr2 (191375708-191375871) | |
353-516, gnl|hg17|chrX (150065475-150065617) | |
353-516, gnl|loxAfr1|scaffold_18878 (59602-59214) | |
353-516, gnl|loxAfr1|scaffold_96079 (432-550) | |
353-516, gnl|mm7|chr1 (52698734-52698351) | |
353-516, gnl|Mm7|chr1 (52698537-52698374) | |
353-516, gnl|mm7|chr2 (20031332-20031474) | |
353-516, gnl|monDom2|scaffold_2 (96433449-96433861) | |
353-516, gnl|monDom2|scaffold_2 (96433821-96433679) | |
353-516, gnl|oryCun1|scaffold_215405 (229482-229107) | |
353-516, gnl|oryCun1|scaffold_215405 (229131-229271) | |
353-516, gnl|panTro1|chr13 (81245282-81245694) | |
353-516, gnl|panTro1|chrX (155341155-155341297) | |
353-516, gnl|rheMac2|chr12 (54396625-54397037) | |
353-516, gnl|rheMac2|chrX (149282332-149282474) | |
353-516, gnl|rn3|chr9 (46116848-46117224) | |
353-516, gnl|rn3|chr9 (46117189-46117049) | |
353-516, gnl|xenTro1|scaffold_941 (414038-414421) | |
630-1068, gnl|bosTau2|chr2 (2780529-2780963) | |
630-1068, gnl|Hg17|chr2 (191380474-191380912) | |
630-1068, gnl|Mm7|chr1 (52692899-52692483) |
Expressed library(ies): 2 entry(ies) | More info |
Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
fty (0.17584) | |
lun (0.150489) |